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IPK Gatersleben > Research > Dept. Molecular Genetics > Gene Regulation
 

 

Gene Regulation
Head: Dr Helmut Bäumlein
Tel: +49 (0)39482 5238
Fax: +49 (0)39482 5758
Email: baumlein@ipk-gatersleben.de
Research Interest

We focus on molecular dissection of genetic and epigenetic pathways that control sexual and asexual plant reproductive development. We use Arabidopsis (dicot), wheat and barley (monocot) as sexual model systems; Hypericum and Boechera (dicot), and parthenogenetic Salmon wheat (monocot) as apomictic systems.

Plant development is a recurrent process occurring in two distinct alternating generations, the sporophyte and the gametophyte. Plant gametes are contained in plant-specific haploid organisms known as the female (embryo sac) and male (pollen) gametophytes that are independently derived via meiotic reduction of the corresponding diploid spores. Fertilisation of haploid gametes (egg and sperm cells) leads to the development of the diploid embryo sporophyte. In flowering plants, there exists a second fertilization event wherein the second female gamete known as the homo-diploid central cell is fertilized by an additional haploid sperm cell, leading to the development of triploid endosperm that nourishes the embryo. After early embryogenesis, the seed matures via synthesis of storage compounds as well as acquisition of desiccation tolerance and dormancy. Subsequently, the mature seed germinate into the whole plant sporophyte.
 
While most plants reproduce sexually, some plant species in the wild reproduce asexually by a process known as apomixis. Both meiosis and egg fertilization are either avoided or circumvented during apomictic events such as apomeiosis and parthenogenesis, respectively; thereby, the offspring are the clonal replica of the mother plant. Molecular dissection of these coordinated developmental events of both sexual and asexual plant reproduction is not only an exciting basic aspect in biology; it gives important information required for biotechnological applications such as food technology (e.g. cereal endosperm) and transfer of elite crop traits like heterosis via apomixis.
 
There are six major research areas that we pursue, and we are also involved in several other sub-projects in collaboration with partner labs.
(I)                In Hypericum, we have uncovered HAPPY, a locus which co-segregates with apospory, an important component of apomixis (Schallau et al. 2010); we further this work in terms of fine-mapping of this locus and transfer of candidate genes to the sexual systems with an anticipation of mimicking apomictic traits.
(II)              Another approach concerns identification of regulatory networks that control gametophytic development. We have discovered a novel class of transcription factors, known as RKD factors, that are preferentially expressed in the egg cells of wheat and Arabidopsis, and that they are delimiting an egg cell-like transcriptional program in certain sporophytic cells (Kõszegi et al. 2011).Genetic and biochemical identification of RKD-specific regulatory network in different plant systems is currently underway.
(III)            Of further interest is the functional characterisation of a novel family of transcription factors, EFFECTORS OF TRANSCRIPTION (ET). ET factors function as regulators of other transcription factors and participate in the control of cell differentiation during sporophyte development (Ivanov et al. 2008). Our ongoing work seeks to understand the function of ET factors during plant reproduction.
(IV)           An extended aspect of our research is a cooperative project with ETH Zürich, which dissects the role of the plant RETINOBLASTOMA (RBR) pathway during plant reproduction (Johnston et al. 2010). This work aims to unravel epigenetic regulators that function down-stream of the RBR pathway.
(V)              We are also interested in unravelling the regulatory processes during embryogenesis and seed maturation (Tiedemann et al. 2008; Junker et al. 2010). Specifically, we aim to understand the hierarchic relations underlying the regulatory network involving the transcription factors FUS3, ABI3, LEC1 and LEC2 during seed development in Arabidopsis.
(VI)            In collaboration with other groups, we study the transcriptome of pollen embryogenesis in barley, in an attempt to understand the molecular reprogramming events during androgenesis whereby the haploid microspore develops into an adult embryo. These results will ultimately provide information necessary for the introduction of double haploid technology in crop plants.
  
We are funded by the IPK, German Research Foundation (DfG), German Federal Ministry of Education and Research, Alexander von Humboldt Foundation (AvH) and European Molecular Biology Organization (EMBO). We extensively collaborate with several work groups within IPK; and with researchers at University of Halle; ETH Zürich, Switzerland; NIBB, Japan; University of Zürich, Switzerland; CSIRO, Australia; and University of Padua and CNR in Italy.
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Recent References
201220112010200920082007200620052004
[ ^ ] 2012
[ ^ ] 2011
2011 KIRIOUKHOVA, O., A.J. JOHNSTON, D. KLEEN, C. KÄGI, R. BASKAR, J.M. MOORE, H. BÄUMLEIN, R. GROß-HARDT, U. GROSSNIKLAUS
Female gametophytic cell specification and seed development require the function of the putative Arabidopsis INCENP ortholog WYRD.
Development. 138(16): 3409-3420.
2011 LERMONTOVA, I., O. KOROLEVA, T. RUTTEN, J. FUCHS, V. SCHUBERT, I. MORAES, D. KOSZEGI, I. SCHUBERT
Knockdown of CENH3 in Arabidopsis reduces mitotic divisions and causes sterility by disturbed meiotic chromosome segregation.
Plant J. doi: 10.1111/j.1365-313X.2011.04664.x.
2011 HECKMANN, S., I. LERMONTOVA, B. BERCKMANS, L. DE VEYLDER, H. BÄUMLEIN, I. SCHUBERT
The E2F transcription factor family regulates CENH3 expression in Arabidopsis thaliana.
Plant J. doi: 10.1111/j.1365-313X.2011.04715.x.
2011 GALLA, G., G. BARCACCIA, A. SCHALLAU, M. PUENTE MOLINS, H. BÄUMLEIN & T.F. SHARBEL
The cytohistological basis of apospory in Hypericum perforatum L.         
Sex Plant Reprod. 24(1): 47-61. DOI 10.1007/s00497-010-0147-7.
2011 KOSZEGI, D., A.J. JOHNSTON, T. RUTTEN, A. CZIHAL, L. ALTSCHMIED, J. KUMLEHN, S.E.J. WÜST, O. KIRIOUKHOVA, J. GHEYSELINCK, U. GROSSNIKLAUS & H. BÄUMLEIN
Members of the RKD transcription factor family induce an egg cell-like gene expression program.
Plant J. 67: 280-291. doi: 10.1111/j.1365-313X.2011.04592.x.
[ ^ ] 2010
2010 JUNKER, A., A. HARTMANN, F. SCHREIBER & H. BÄUMLEIN
An engineer's view on regulation of seed development.                           
Trends Plant Sci. 15(6):303-307.
2010 SCHALLAU, A., F. ARZENTON, A.J. JOHNSTON, U. HÄHNEL, D. KOSZEGI, F.R. BLATTNER, L. ALTSCHMIED, G. HABERER, G. BARCACCIA & H. BÄUMLEIN
Identification and genetic analysis of the APOSPORY locus in Hypericum perforatum L.
Plant J. 62: 773-784.
2010 JOHNSTON, A.J., O. KIRIOUKHOVA, P.J. BARRELL, T. RUTTEN, J.M. MOORE, R. BASKAR, U. GROSSNIKLAUS & W. GRUISSEM
Dosage-sensitive function of RETINOBLASTOMA RELATED and convergent epigenetic control are required during the Arabidopsis life cycle.
PLoS Genet. 6: e1000988.
2010 AQUEA, F., A.J. JOHNSTON, P. CAÑON, U. GROSSNIKLAUS & P. ARCE-JOHNSON
TRAUCO, a Trithorax-group gene homologue, is required for early embryogenesis in Arabidopsis thaliana.
J Exp Bot. 61(4):1215-24.
[ ^ ] 2009
2009 SON, L.V., J. TIEDEMANN, T. RUTTEN, S. HILLMER, G. HINZ, T. ZANK, R. MANTEUFFEL & H. BÄUMLEIN
The BURP domain protein AtUSPL1 of Arabidopsis thaliana is destined to the protein storage vacuoles and overexpression of the cognate gene distorts seed development.
Plant Molecular Biology. 71(4-5):319-29. doi 10.1007/s111103-009-9526-6.
[ ^ ] 2008
2008 TIEDEMANN, J., T. RUTTEN, G. MÖNKE, A. VORWIEGER, H. ROLLETSCHEK, D. MEISSNER, C. MILKOWSKI, S. PETERECK, H.-P. MOCK, T. ZANK & H. BÄUMLEIN
Dissection of a complex seed phenotype: Novel insights in FUSCA3 regulated processes.
Dev. Biol. 317(1):1-12.
2008 IVANOV, R., J. TIEDEMANN, A. CZIHAL, A. SCHALLAU, H. LE DIEP, H.-P. MOCK, B. CLAUS, A. TEWES & H. BÄUMLEIN
EFFECTOR OF TRANSCRIPTION2 is involved in xylem differentiation and includes a functional DNA single strand cutting domain.
Dev. Biol. 313(1):93-106.
2008 SCHALLAU, A., I. KAKHOVSKAYA, A. TEWES, J. TIEDEMANN, M. MOHR, I. GROSSE, R. MANTEUFFEL & H. BÄUMLEIN Phylogenetic footprints in fern spore- and seed-specific gene promoters.
Plant J. 53(3): 414-424.
[ ^ ] 2007
2007 PEROVIC, D., P. TIFFIN, D. DOUCHKOV, H. BÄUMLEIN & A. GRANER An integrated approach for the comparative analysis of a multigene family: The nicotianamine synthase genes of barley.
Funct. Integr. Genomics 7(2):169-179.
2007 KOTAK, S., E. VIERLING, H. BÄUMLEIN & P VON KOSKULL-DÖRING
A novel transcriptional cascade regulating expression of heat stress proteins during development of Arabidopsis.
Plant Cell 19(1):182-195.
2007 VORWIEGER, A., C. GRYCZKA, A. CZIHAL, D. DOUCHKOV, J. TIEDEMANN, H.-P. MOCK, M. JAKOBY, B. WEISSHAAR, I. SAALBACH & H. BÄUMLEIN
Iron assimilation and transcription factor controlled synthesis of riboflavin in plants.
Planta 226(1):147-158.
2007 WANG H.Y., M. KLATTE M. JAKOBY, H. BÄUMLEIN, B. WEISSHAAR & P. BAUER
Iron deficiency-mediated stress regulation of four subgroup Ib BHLH genes in Arabidopsis thaliana.
Planta 226(4):897-908.
2007 BARCACCIA, G., H. BÄUMLEIN & T.F. SHARBEL
Apomixis in St. John´s wort (Hypericum perforatumg L.): An overview and glimpse towards the future. 
In: Hörandl, E., U. Grossniklaus, T.F. Sharbel & P. van Dijk (Eds.) Apomixis: evolution, mechanism and perspectives.
Regnum Veg. 147, A.R.G. Ganter Verlag, Ruggell/Liechtenstein 259-280.
2007 MATZK, F., S. PRODANOVIC, A. CZIHAL, J. TIEDEMANN, F. ARZENTON, F. BLATTNER, J. KUMLEHN, L. ALTSCHMIED, I. SCHUBERT, A. JOHSTON, U. GROSSNIKLAUS & H. BÄUMLEIN
Genetic control of apomixis: Preliminary lessons from Poa, Hypericum and wheat egg cells.
In: Hörandl, E., U. Grossniklaus, T.F. Sharbel & P. van Dijk (Eds.) Apomixis: evolution, mechanism and perspectives.
Regnum Veg. 147, A.R.G. Ganter Verlag, Ruggell/Liechtenstein 159-166.
[ ^ ] 2006
2006 ZIMMERMANN, G., H. BÄUMLEIN, H.-P. MOCK, A. HIMMELBACH & P. SCHWEIZER The multigene family encoding germin-like proteins of barley: Regulation and function in basel host resistance.
Plant Physiol. 142: 181-192.
[ ^ ] 2005
2005 DOUCHKOV, D., C. GRYCZKA, U.W. STEPHAN, R. HELL AND H. BÄUMLEIN Ectopic expression of nicotianamine synthase genes results in improved iron accumulation and increased nickel tolerance in transgenic tobacco. Plant Physiol. im Druck
2005 MATZK, F., S. PRODANOVIC, H. BÄUMLEIN AND I. SCHUBERT The inheritance of apomixis in Poa pratensis L. confirms of five locus model with differences in gene expressivity and penetrance. Plant Cell 17: 13-24.
[ ^ ] 2004
2004 GIERSBERG, M., I. SAALBACH AND H. BÄUMLEIN Gene farming in pea under field conditions. In: Molecular Farming. Fischer, R. & S. Schillberg (eds.) WILEY-VCH 2004-06-25.
2004 MÖNKE,G., L. ALTSCHMIED, A. TEWES, W. REIDT, H.-P. MOCK, H. BÄUMLEIN AND U. CONRAD Seed-specific transcription factors ABI3 and FUS3: molecular interaction with DNA. Planta 219: 158-166
2004 VIEWEG, M.F., M. FRÜHLING, H.J. QUANDT, U. HEIM, H. BÄUMLEIN, A. PÜHLER, H. KÜSTER AND A.M. PERLICK The promoter of the Vicia faba L. Leghemoglobin gene VfLB29 is specifically activated in the infected cells of root nodules and the arbuscule-containing cells of mycorrhiza roots from different legume and nonlegume plants. Mol.Plant Microbe Interact.17: 62-69
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Staff
scientific staff
Baeumlein, Dr. Helmut +49 (0)39482 5238
Kirioukhova, Dr. Olga +49 (0)39482 5663
Koszegi, Dr. David +49 (0)39482 5751
Schallau, Dr. Anna +49 (0)39482 5440
staff or visitors
Busching, Annett +49 (0)39482 5588
Czihal, Andreas +49 (0)39482 5402
Johnston, Dr. Amal Joseph +49 (0)39482 5575
Liemann, Elke +49 (0)39482 5134
Skiebe, Sabine +49 (0)39482 5768
Zimmer, Marlene
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Keywords

reproduction, development, meiosis, gametogenesis, fertilisation, embryogenesis, endosperm, apomeiosis, parthenogenesis, apomixis, seed maturation, doubled haploidy