Publications

Autoren Titel
2019
Alomari D Z, Eggert K, von Wirén N, Polley A, Plieske J, Ganal M W, Liu F, Pillen K, Röder M S Whole-genome association mapping and genomic prediction for iron concentration in wheat grains. Int. J. Mol. Sci. 20 (2019) 76. dx.doi.org/10.3390/ijms20010076
Faehnrich B, Otto L-G, Franz C, Mešić E, Cosendai A-C, Dobeš C Auxin application in interploidy crosses and genome stability: across-generation investigations on German chamomile (Matricaria recutita [L.] Rauschert) of various origins. Euphytica 215 (2019) 16. dx.doi.org/10.1007/s10681-019-2335-3
Hoang P T N, Schubert V, Meister A, Fuchs J, Schubert I Variation in genome size, cell and nucleus volume, chromosome number and rDNA loci among duckweeds. Sci. Rep. 9 (2019) 3234. dx.doi.org/10.1038/s41598-019-39332-w
Hoang T N P Comparative cytology and cytogenomics for representative species of the five duckweed genera. (PhD Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät III Agrar- und Ernährungswissenschaften, Geowissenschaften und Informatik (2019) 99 pp.
Li Y H, Li D, Jiao Y Q, Schnable J C, Li Y F, Li H H, Chen H Z, Hong H L, Zhang T, Liu B, Liu Z X, You Q B, Tian Y, Guo Y, Guan R X, Zhang L J, Chang R Z, Zhang Z, Reif J, Zhou X A, Schnable P S, Qiu L J Identification of loci controlling adaptation in Chinese soybean landraces via a combination of conventional and bioclimatic GWAS. Plant Biotechnol. J. (2019) accepted. dx.doi.org/10.1111/pbi.13206
Mascher M, Schreiber M, Scholz U, Graner A, Reif J C, Stein N Genebank genomics bridges the gap between the conservation of crop diversity and plant breeding. Nat. Genet. 51 (2019) 1076-1081. dx.doi.org/10.1038/s41588-019-0443-6
Mérida-Garcia R, Liu G, He S, Gonzalez-Dugo V, Dorado G, Gálvez S, Solís I, Zarco-Tejada P J, Reif J C, Hernandez P Genetic dissection of agronomic and quality traits based on association mapping and genomic selection approaches in durum wheat grown in Southern Spain. PLoS One 14 (2019) e0211718. dx.doi.org/10.1371/journal.pone.0211718
Milner S G, Jost M, Taketa S, Mazón E R, Himmelbach A, Oppermann M, Weise S, Knüpffer H, Basterrechea M, König P, Schüler D, Sharma R, Pasam R K, Rutten T, Guo G, Xu D, Zhang J, Herren G, Müller T, Krattinger S G, Keller B, Jiang Y, González M Y, Zhao Y, Habekuß A, Färber S, Ordon F, Lange M, Börner A, Graner A, Reif J C, Scholz U, Mascher M, Stein N Genebank genomics highlights the diversity of a global barley collection. Nat. Genet. 51 (2019) 319-326. doi.org/10.1038/s41588-018-0266-x
Muqaddasi Q H, Zhao Y, Rodemann B, Plieske J, Ganal M W, Röder M S Genome-wide association mapping and prediction of adult stage Septoria tritici blotch infection in European winter wheat via high-density marker arrays. Plant Genome 12 (2019) 180029. dx.doi.org/10.3835/plantgenome2018.05.0029
Rembe M, Zhao Y, Jiang Y, Reif J C Reciprocal recurrent genomic selection: an attractive tool to leverage hybrid wheat breeding. Theor. Appl. Genet. 132 (2019) 687–698. dx.doi.org/10.1007/s00122-018-3244-x
Takenaka S, Weschke W, Brückner B, Murata M, Endo T R Chromosome arm locations of barley sucrose transporter gene in transgenic winter wheat lines. Front. Plant Sci. 10 (2019) 548. dx.doi.org/10.3389/fpls.2019.00548
Thorwarth P, Liu G, Ebmeyer E, Schacht J, Schachschneider R, Kazman E, Reif J C, Würschum T, Longin C F H Dissecting the genetics underlying the relationship between protein content and grain yield in a large hybrid wheat population. Theor. Appl. Genet. 132 (2019) 489–500. dx.doi.org/10.1007/s00122-018-3236-x
2018
Ávila Robledillo L, Koblížková A, Novák P, Böttinger K, Vrbová I, Neumann P, Schubert I, Macas J Satellite DNA in Vicia faba is characterized by remarkable diversity in its sequence composition, association with centromeres, and replication timing. Sci. Rep. 8 (2018) 5838. dx.doi.org/10.1038/s41598-018-24196-3
Börner A, Akram S, Alomari D, Cardelli M, Castro A, Dietz J, Eggert K, Fauzia, Gerard G, Giménez D, Golik S, Lohwasser U, Lori G, Malbrán I, Maryam, Muqaddasi Q, Nagel M, Nezhad K, Pardi M, Perelló A, Rehman Arif M, Röder M, Saldúa L, Schierenbeck M, Simón M, Tarawneh R, Ungaro Korn S, Uranga J, von Wirén N, Yanniccari M, Zhao Y Items from Germany. Ann. Wheat Newsl. 64 (2018) 13-20.
Döll S, Kuhlmann M, Rutten T, Mette M F, Scharfenberg S, Petridis A, Berreth D C, Mock H-P Accumulation of the coumarin scopolin under abiotic stress conditions is mediated by the Arabidopsis thaliana THO/TREX complex. Plant J. 93 (2018) 431-444. dx.doi.org/10.1111/tpj.13797
González M Y, Philipp N, Schulthess A W, Weise S, Zhao Y, Börner A, Oppermann M, Graner A, Reif J C Unlocking historical phenotypic data from an ex situ collection to enhance the informed utilization of genetic resources of barley (Hordeum sp.). Theor. Appl. Genet. 131 (2018) 2009-2019. dx.doi.org/10.1007/s00122-018-3129-z
Gonzalez M Y, Weise S, Zhao Y, Philipp N, Arend D, Börner A, Oppermann M, Graner A, Reif J C, Schulthess A W Unbalanced historical phenotypic data from seed regeneration of a barley ex situ collection. Sci. Data 5 (2018) 180278. dx.doi.org/10.1038/sdata.2018.278
Guo Z, Liu G, Röder M S, Reif J C, Ganal M W, Schnurbusch T Genome-wide association analyses of plant growth traits during the stem elongation phase in wheat. Plant Biotechnol. J. 16 (2018) 2042-2052. dx.doi.org/10.1111/pbi.12937
Guo Z, Zhao Y, Röder M S, Reif J C, Ganal M W, Chen D, Schnurbusch T Manipulation and prediction of spike morphology traits for the improvement of grain yield in wheat. Sci. Rep. 8 (2018) 14435. dx.doi.org/10.1038/s41598-018-31977-3
Henneke A Quantitative genetic analysis of metabolite profiles in wheat inbred lines and hybrids. (Master Thesis) Hannover, Leibniz Universität Hannover (2018)
Hoang P N T, Michael T P, Gilbert S, Chu P, Motley T S, Appenroth K J, Schubert I, Lam E Generating a high-confidence reference genome map of the Greater Duckweed by integration of cytogenomic, optical mapping and Oxford Nanopore technologies. Plant J. 96 (2018) 670-684. dx.doi.org/10.1111/tpj.14049
Jiang Y, Schmidt R H, Reif J C Haplotype-based genome-wide prediction models exploit local epistatic interactions among markers. G3 Genes Genom. Genet. 8 (2018) 1687-1699. dx.doi.org/10.1534/g3.117.300548
Kochevenko A, Jiang Y, Seiler C, Surdonja K, Kollers S, Reif J C, Korzun V, Graner A Identification of QTL hot spots for malting quality in two elite breeding lines with distinct tolerance to abiotic stress. BMC Plant Biol. 18 (2018) 106. dx.doi.org/10.1186/s12870-018-1323-4
Li Y H, Reif J C, Hong H L, Li H H, Liu Z X, Ma Y S, Li J, Tian Y, Li Y F, Li W B, Qiu L J Genome-wide association mapping of QTL underlying seed oil and protein contents of a diverse panel of soybean accessions. Plant Sci. 266 (2018) 95-101. dx.doi.org/10.1016/j.plantsci.2017.04.013
Liu G Genome-wide prediction of hybrid performance and yield stability analysis in winter wheat. (PhD Thesis, kumulativ) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät III Agrar- und Ernährungswissenschaften, Geowissenschaften und Informatik (2018) 48 pp.
Otto L-G, Brassac J, Mondal P, Sonnenschein M, Plocharski B, Junghanns W, Preiss S, Degenhardt J, Lazzaro M, Bocchini M, Albertini E, Plescher A, Fraust B, He S, Reif J, Sharbel T Next generation breeding tools for chamomile: Evaluating genetic diversity, ploidy variation, and identifying marker-trait associations. In: Marthe F, Blum H, Heuberger H, Pude R (Eds.): 8. Tagung für Arznei- und Gewürzpflanzenforschung Vielfalt im Dialog mit Mensch und Natur", 10. – 13. September 2018, Bonn." (Series: Julius-Kühn-Archiv, 460) Quedlinburg: Julius Kühn-Institut, Bundesforschungsinstitut für Kulturpflanzen (2018) 67-71. dx.doi.org/10.5073/jka.2018.460.019
Pfündel E E, Latouche G, Meister A, Cerovic Z G Linking chloroplast relocation to different responses of photosynthesis to blue and red radiation in low and high light-acclimated leaves of Arabidopsis thaliana (L.). Photosynth. Res. 137 (2018) 105-128. dx.doi.org/10.1007/s11120-018-0482-3
Philipp N, Weichert H, Bohra U, Weschke W, Schulthess A W, Weber H Grain number and grain yield distribution along the spike remain stable despite breeding for high yield in winter wheat. PLoS One 13 (2018) e0205452. dx.doi.org/10.1371/journal.pone.0205452
Philipp N, Weise S, Oppermann M, Börner A, Graner A, Keilwagen J, Kilian B, Zhao Y S, Reif J C, Schulthess A W Leveraging the use of historical data gathered during seed regeneration of an ex situ genebank collection of wheat. Front. Plant Sci. 9 (2018) 609. dx.doi.org/10.3389/Fpls.2018.00609
Schubert I What is behind centromere repositioning"?" Chromosoma 127 (2018) 229-234. dx.doi.org/10.1007/s00412-018-0672-y
Schulthess A W Evaluating the benefits and limitations of multiple-trait breeding assisted by genomics in cereal crops. (PhD Thesis, kumulativ) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Institut für Agrar- und Ernährungswissenschaften der Naturwissenschaftlichen Fakultät III (2018) 48 pp.
Schulthess A W, Zhao Y, Longin C F H, Reif J C Advantages and limitations of multiple-trait genomic prediction for Fusarium head blight severity in hybrid wheat (Triticum aestivum L.). Theor. Appl. Genet. 131 (2018) 685–701. dx.doi.org/10.1007/s00122-017-3029-7
Thorwarth P, Piepho H P, Zhao Y S, Ebmeyer E, Schacht J, Schachschneider R, Kazman E, Reif J C, Würschum T, Longin C F H Higher grain yield and higher grain protein deviation underline the potential of hybrid wheat for a sustainable agriculture. Plant Breed. 137 (2018) 326-337. dx.doi.org/10.1111/pbr.12588
Würschum T, Liu G, Boeven P H G, Longin C F H, Mirdita V, Kazman E, Zhao Y, Reif J C Exploiting the Rht portfolio for hybrid wheat breeding. Theor. Appl. Genet. 131 (2018) 1433–1442. dx.doi.org/10.1007/s00122-018-3088-4
2017
Baroux C, Pecinka A, Fuchs J, Kreth G, Schubert I, Grossniklaus U Non-random chromosome arrangement in triploid endosperm nuclei. Chromosoma 126 (2017) 115-124. dx.doi.org/10.1007/s00412-016-0578-5
Beukert U Genome-based identification of heterotic patterns in rice. (Master Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät III, Institut für Agrar- und Ernährungswissenschaften (2017) 31 pp.
Beukert U, Li Z, Liu G, Zhao Y, Ramachandra N, Mirdita V, Pita F, Pillen K, Reif J C Genome-based identification of heterotic patterns in rice. Rice 10 (2017) 22. dx.doi.org/10.1186/s12284-017-0163-4
He S Potentials and limits of genomics-assisted wheat breeding. (PhD Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Institut für Agrar- und Ernährungswissenschaften der Naturwissenschaftlichen Fakultät III (2017) 43 pp.
He S, Reif J C, Korzun V, Bothe R, Ebmeyer E, Jiang Y Genome-wide mapping and prediction suggests presence of local epistasis in a vast elite winter wheat populations adapted to Central Europe. Theor. Appl. Genet. 130 (2017) 635–647. dx.doi.org/10.1007/s00122-016-2840-x
Hoang P T N, Schubert I Reconstruction of chromosome rearrangements between the two most ancestral duckweed species Spirodela polyrhiza and S. intermedia. Chromosoma 126 (2017) 729-739. dx.doi.org/10.1007/s00412-017-0636-7
Jiang Y, Schmidt R H, Zhao Y, Reif J C A quantitative genetic framework highlights the role of epistatic effects for grain-yield heterosis in bread wheat. Nat. Genet. 49 (2017) 1741-1746. dx.doi.org/10.1038/ng.3974
Jiang Y, Schulthess A W, Rodemann B, Ling J, Plieske J, Kollers S, Ebmeyer E, Korzun V, Argillier O, Stiewe G, Ganal M W, Röder M S, Reif J C Validating the prediction accuracies of marker-assisted and genomic selection of Fusarium head blight resistance in wheat using an independent sample. Theor. Appl. Genet. 130 (2017) 471-482. dx.doi.org/10.1007/s00122-016-2827-7
Li Y-h, Reif J C, Hong H-l, Li H-h, Liu Z-x, Ma Y-s, Li J, Tian Y, Li Y-f, Li W-b, Qiu L-j Genome-wide association mapping of QTL underlying seed oil and protein contents of a diverse panel of soybean accessions. Plant Sci. 266 (2017) 95-101. dx.doi.org/10.1016/j.plantsci.2017.04.013
Li Z, Philipp N, Spiller M, Stiewe G, Reif J C, Zhao Y Genome-wide prediction of the performance of three-way hybrids in barley. Plant Genome 10 (2017) dx.doi.org/10.3835/plantgenome2016.05.0046
Liu G, Zhao Y, Mirdita V, Reif J C Efficient strategies to assess yield stability in winter wheat. Theor. Appl. Genet. 130 (2017) 1587-1599. dx.doi.org/10.1007/s00122-017-2912-6
Liu P, Zhao Y, Liu G, Wang M, Hu D, Hu J, Meng J, Reif J C, Zou J Hybrid performance of an immortalized F2 rapeseed population is driven by additive, dominance, and epistatic effects. Front. Plant Sci. 8 (2017) 815. dx.doi.org/10.3389/fpls.2017.00815
Matros A, Liu G, Hartmann A, Jiang Y, Zhao Y, Wang H, Ebmeyer E, Korzun V, Schachschneider R, Kazman E, Schacht J, Longin F, Reif J C, Mock H-P Genome-metabolite associations revealed low heritability, high genetic complexity, and causal relations for leaf metabolites in winter wheat (Triticum aestivum). J. Exp. Bot. 68 (2017) 415-428. dx.doi.org/10.1093/jxb/erw441
Miedaner T, Schulthess A W, Gowda M, Reif J C, Longin C F H High accuracy of predicting hybrid performance of Fusarium head blight resistance by mid-parent values in wheat. Theor. Appl. Genet. 130 (2017) 461-470. dx.doi.org/10.1007/s00122-016-2826-8
Milker S Untersuchung von männlicher Sterilität und Selbstinkompatibilität bei Matricaria chamomilla L. zur Bestäubungslenkung. (Bachelor Thesis) Jena, Ernst-Abbe-Hochschule Jena, Fachbereich Medizintechnik und Biotechnologie, Studiengang Biotechnologie (2017) 56 pp.
Muqaddasi Q H, Reif J C, Li Z, Basnet B R, Dreisigacker S, Röder M S Genome-wide association mapping and genome-wide prediction of anther extrusion in CIMMYT spring wheat. Euphytica 213 (2017) 73. dx.doi.org/10.1007/s10681-017-1863-y
Muraya M M, Chu J, Zhao Y, Junker A, Klukas C, Reif J C, Altmann T Genetic variation of growth dynamics in maize (Zea mays L.) revealed through automated non-invasive phenotyping. Plant J. 89 (2017) 366–380. dx.doi.org/10.1111/tpj.13390
Neumann K, Zhao Y, Chu J, Keilwagen J, Reif J C, Kilian B, Graner A Genetic architecture and temporal patterns of biomass accumulation in spring barley revealed by image analysis. BMC Plant Biol. 17 (2017) 137. dx.doi.org/10.1186/s12870-017-1085-4
Otto L-G, Mondal P, Brassac J, Preiss S, Degenhardt J, He S, Reif J C, Sharbel T F Use of genotyping-by-sequencing to determine the genetic structure in the medicinal plant chamomile, and to identify flowering time and alpha-bisabolol associated SNP-loci by genome-wide association mapping. BMC Genomics 18 (2017) 599. dx.doi.org/10.1186/s12864-017-3991-0
Rembe M Genome-wide association mapping and genome-wide prediction of anther extrusion in a Nested Association Mapping (NAM) population of wild x cultivated barley. (Master Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät III, Institut für Agrar- und Ernährungswissenschaften (2017) 60 pp.
Sandmann M Functional characterization of AtKNL2 reveals the path for its centromere localization and its impact on the centromere environment. (PhD Thesis, kumulativ) Jena, Friedrich-Schiller-Universität Jena, Biologisch-Pharmazeutische Fakultät (2017) 165? pp.
Sandmann M, Lermontova I Kinetochors and centromeres, the structural basis for reproduction. Endocytobiosis Cell Res. 28 (2017) 38-49.
Sandmann M, Talbert P, Demidov D, Kuhlmann M, Rutten T, Conrad U, Lermontova I Targeting of A. thaliana KNL2 to centromeres depends on the conserved CENPC-k motif in its C-terminus. Plant Cell 29 (2017) 144-155. dx.doi.org/10.1105/tpc.16.00720
Schmidt R, Boudichevskaia A, Cao H X, He S, Meyer R C, Reif J C Extracting genotype information of Arabidopsis thaliana recombinant inbred lines from transcript profiles established with high-density oligonucleotide arrays. Plant Cell Rep. 36 (2017) 1871-1881. dx.doi.org/10.1007/s00299-017-2200-6
Schubert I Some past developments and open questions in understanding the biology of nucleus. The Nucleus 60 (2017) 247-249. dx.doi.org/10.1007/s13237-017-0217-4
Schulthess A W, Reif J C, Ling J, Plieske J, Kollers S, Ebmeyer E, Korzun V, Argillier O, Stiewe G, Ganal M W, Röder M S, Jiang Y The roles of pleiotropy and close linkage as revealed by association mapping of yield and correlated traits of wheat (Triticum aestivum L.). J. Exp. Bot. 68 (2017) 4089-4101. dx.doi.org/10.1093/jxb/erx214
Schulthess A W, Zhao Y, Reif J C Genomic selection in hybrid breeding. In: Varshney R K, Roorkiwal M, Sorrells M E (Eds.): Genomic selection for crop improvement: new molecular breeding strategies for crop improvement. Cham: Springer (2017) 149-183. dx.doi.org/10.1007/978-3-319-63170-7_7 ISBN 978-3-319-63170-7
Tran T D, Šimková H, Schmidt R, Doležel J, Schubert I, Fuchs J Chromosome identification for the carnivorous plant Genlisea margaretae. Chromosoma 126 (2017) 389–397. dx.doi.org/10.1007/s00412-016-0599-0
Varshney R K, Shi C, Thudi M, Mariac C, Wallace J, Qi P, Zhang H, Zhao Y, Wang X, Rathore A, Srivastava R K, Chitikineni A, Fan G, Bajaj P, Punnuri S, Gupta S K, Wang H, Jiang Y, Couderc M, Katta M A V S K, Paudel D R, Mungra K D, Chen W, Harris-Shultz K R, Garg V, Desai N, Doddamani D, Kane N A, Conner J A, Ghatak A, Chaturvedi P, Subramaniam S, Yadav O P, Berthouly-Salazar C, Hamidou F, Wang J, Liang X, Clotault J, Upadhyaya H D, Cubry P, Rhone B, Gueye M C, Sunkar R, Dupuy C, Sparvoli F, Cheng S, Mahala R S, Singh B, Yadav R S, Lyons E, Datta S K, Hash C T, Devos K M, Buckler E, Bennetzen J L, Paterson A H, Ozias-Akins P, Grando S, Wang J, Mohapatra T, Weckwerth W, Reif J C, Liu X, Vigouroux Y, Xu X Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nat. Biotechnol. 35 (2017) 969–976. dx.doi.org/10.1038/nbt.3943
Vu G T H, Cao H X, Fauser F, Reiss B, Puchta H, Schubert I Endogenous sequence patterns predispose the repair modes of CRISPR/Cas9-induced DNA double strand breaks in Arabidopsis thaliana. Plant J. 92 (2017) 57-67. dx.doi.org/10.1111/tpj.13634
Vu G T H, Cao H X, Reiss B, Schubert I Deletion-bias in DNA double-strand break repair differentially contributes to plant genome shrinkage. New Phytol. 214 (2017) 1712–1721. dx.doi.org/10.1111/nph.14490
Wang W, Cao X H, Miclăuș M, Xiong W, Xu J-H The promise of agriculture genomics. Int. J. Genomics 2017 (2017) Art. ID 9743749. dx.doi.org/10.1155/2017/9743749
2016
Beuchel C F Potential and limits of marker-assisted selection and genome-wide prediction for powdery mildew and tan spot resistance in a large European elite winter wheat population. (Master Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät III, Institut für Agrar- und Ernährungswissenschaften (2016) 36 pp.
Campos K M, Royo C, Schulthess A, Villegas D, Matus I, Ammar K, Schwember A R Association of phytoene synthase Psy1-A1 and Psy1-B1 allelic variants with semolina yellowness in durum wheat (Triticum turgidum L. var. durum). Euphytica 207 (2016) 109-117. dx.doi.org/10.1007/s10681-015-1541-x
Cao H X, Vu G T H, Wang W, Appenroth K J, Messing J, Schubert I The map-based genome sequence of Spirodela polyrhiza aligned with its chromosomes, a reference for karyotype evolution. New Phytol. 209 (2016) 354-363. dx.doi.org/10.1111/nph.13592
Cao H X, Wang W, Le H T T, Vu G T H The power of CRISPR-Cas9-induced genome editing to speed up plant breeding. Int. J. Genomics 2016 (2016) Article ID 5078796. dx.doi.org/10.1155/2016/5078796
Chen W, Kastner C, Nowara D, Oliveira-Garcia E, Rutten T, Zhao Y, Deising H B, Kumlehn J, Schweizer P Host-induced silencing of Fusarium culmorum genes protects wheat from infection. J. Exp. Bot. 67 (2016) 4979-4991. dx.doi.org/10.1093/jxb/erw263
Fransz P, Linc G, Lee C R, Aflitos S A, Lasky J R, Toomajian C, Ali H, Peters J, van Dam P, Ji X, Kuzak M, Gerats T, Schubert I, Schneeberger K, Colot V, Martienssen R, Koornneef M, Nordborg M, Juenger T E, de Jong H, Schranz M E Molecular, genetic and evolutionary analysis of a paracentric inversion in Arabidopsis thaliana. Plant J. 88 (2016) 159-178. dx.doi.org/10.1111/tpj.13262
He S, Schulthess A W, Mirdita V, Zhao Y, Korzun V, Bothe R, Ebmeyer E, Reif J C, Jiang Y Genomic selection in a commercial winter wheat population. Theor. Appl. Genet. 129 (2016) 641-651. dx.doi.org/10.1007/s00122-015-2655-1
Lermontova I, Fajkus J, Schmit A C, Schubert I (Eds.) Front. Plant Sci., Special Research Topic “Centromere and telomere biology of Plants” Vol. 7. (2016) pp.
Li Y-h, Shi X-h, Li H-h, Reif J C, Wang J-j, Liu Z-x, He S, Yu B-s, Qiu L-j Dissecting the genetic basis of resistance to soybean cyst nematode combining linkage and linkage disequilibrium mapping. Plant Genome 9 (2016) dx.doi.org/10.3835/plantgenome2015.04.0020
Liu G, Zhao Y, Gowda M, Longin C F, Reif J C, Mette M F Predicting hybrid performances for quality traits through genomic-assisted approaches in Central European wheat. PLoS One 11 (2016) e0158635. dx.doi.org/10.1371/journal.pone.0158635
Liu W, Leiser W L, Reif J C, Tucker M R, Losert D, Weissmann S, Hahn V, Maurer H P, Würschum T Multiple-line cross QTL mapping for grain yield and thousand kernel weight in triticale. Plant Breed. 135 (2016) 567–573. dx.doi.org/10.1111/pbr.12400
Ma Y, Reif J C, Jiang Y, Wen Z, Wang D, Liu Z, Guo Y, Wei S, Wang S, Yang C, Wang H, Yang C, Lu W, Xu R, Zhou R, Wang R, Sun Z, Chen H, Zhang W, Wu J, Hu G, Liu C, Luan X, Fu Y, Guo T, Han T, Zhang M, Sun B, Zhang L, Chen W, Wu C, Sun S, Yuan B, Zhou X, Han D, Yan H, Li W, Qiu L Potential of marker selection to increase prediction accuracy of genomic selection in soybean (Glycine max L.). Mol. Breed. 36 (2016) 113. dx.doi.org/10.1007/s11032-016-0504-9
Philipp N, Liu G, Zhao Y, He S, Spiller M, Stiewe G, Pillen K, Reif J C, Li Z Genomic prediction of barley hybrid performance. Plant Genome 9 (2016) dx.doi.org/10.3835/plantgenome2016.02.0016
Sandmann M, Fuchs J, Lermontova I Immunolabeling of nuclei/chromosomes in Arabidopsis thaliana. In: Caillaud M-C (Ed.): Plant cell division: methods and protocols. (Series: Methods in molecular biology, Vol. 1370) New York [u.a.]: Humana Press (2016) 127-135. dx.doi.org/10.1007/978-1-4939-3142-2_10 ISBN 978-1-4939-3141-5
Schubert I We have an inflation of review papers – for what are reviews good? Front. Plant Sci. 7 (2016) 88. dx.doi.org/10.3389/fpls.2016.00088
Schubert I, Vu G T H Genome stability and evolution: attempting a holistic view. Trends Plant Sci. 21 (2016) 749-757. dx.doi.org/10.1016/j.tplants.2016.06.003
Schulthess A W, Wang Y, Miedaner T, Wilde P, Reif J C, Zhao Y Multiple-trait- and selection indices-genomic predictions for grain yield and protein content in rye for feeding purposes. Theor. Appl. Genet. 129 (2016) 273-287. dx.doi.org/10.1007/s00122-015-2626-6
Vargas V H, Schulthess A, Royo C, Matus I, Schwember A R Transcripts levels of Phytoene synthase 1 (Psy-1) are associated to semolina yellowness variation in durum wheat (Triticum turgidum L. ssp. durum). J. Cer. Sci. 68 (2016) 155-163. dx.doi.org/10.1016/j.jcs.2016.01.011
Wang Y Genome-wide prediction of testcross performance and phenotypic stability for important agronomic and quality traits in elite hybrid rye (Secale cereale L.). (PhD Thesis, kumulativ) Stuttgart, Landessaatzuchtanstalt der Universität Hohenheim (2016) 35 pp.
Watanabe K, Breier U, Hensel G, Kumlehn J, Schubert I, Reiss B Stable gene replacement in barley by targeted double-strand break induction. J. Exp. Bot. 67 (2016) 1433-1445. dx.doi.org/10.1093/jxb/erv537
Weimer A K, Demidov D, Lermontova I, Beeckman T, Van Damme D Aurora kinases throughout plant development. Trends Plant Sci. 21 (2016) 69-79. dx.doi.org/10.1016/j.tplants.2015.10.001
Zou J, Zhao Y, Liu P, Shi L, Wang X, Wang M, Meng J, Reif J C Seed quality traits can be predicted with high accuracy in Brassica napus using genomic data. PLoS One 11 (2016) e0166624. dx.doi.org/10.1371/journal.pone.0166624
2015
Batzenschlager M, Lermontova I, Schubert V, Fuchs J, Berr A, Koini M A, Houlné G, Herzog E, Rutten T, Alioua A, Fransz P, Schmit A-C, Chabouté M-E Arabidopsis MZT1 homologs GIP1 and GIP2 are essential for centromere architecture. Proc. Natl. Acad. Sci. U.S.A. 112 (2015) 8656–8660. dx.doi.org/10.1073/pnas.1506351112
Cao H X, Schmutzer T, Scholz U, Pecinka A, Schubert I, Vu G T H Metatranscriptome analysis reveals host-microbiome interactions in traps of carnivorous Genlisea species. Front. Microbiol. 6 (2015) 526. dx.doi.org/10.3389/fmicb.2015.00526
Cao H X, Vu G T, Wang W, Messing J, Schubert I Chromatin organisation in duckweed interphase nuclei in relation to the nuclear DNA content. Plant Biol. 17 (2015) 120-124. dx.doi.org/10.1111/plb.12194
He S, Wang S, Fu W, Ding X, Zhang Q Imputation of missing genotypes from low- to high-density SNP panel in different population designs. Anim. Genet. 46 (2015) 1-7. dx.doi.org/10.1111/age.12236
He S, Zhao Y, Mette M F, Bothe R, Ebmeyer E, Sharbel T F, Reif J C, Jiang Y Prospects and limits of marker imputation in quantitative genetic studies in European elite wheat (Triticum aestivum L.). BMC Genomics 16 (2015) 168. dx.doi.org/10.1186/s12864-015-1366-y
Jiang Y, Reif J C Modelling epistasis in genomic selection. Genetics 201 (2015) 759-768. dx.doi.org/10.1534/genetics.115.177907
Jiang Y, Zhao Y, Rodemann B, Plieske J, Kollers S, Korzun V, Ebmeyer E, Argillier O, Hinze M, Ling J, Röder M S, Ganal M W, Mette M F, Reif J C Potential and limits to unravel the genetic architecture and predict the variation of Fusarium head blight resistance in European winter wheat (Triticum aestivum L.). Heredity 114 (2015) 318-326. dx.doi.org/10.1038/hdy.2014.104
Lermontova I, Sandmann M, Mascher M, Schmit A C, Chabouté M E Centromeric chromatin and its dynamics in plants. Plant J. 83 (2015) 4-17. dx.doi.org/10.1111/tpj.12875
Lermontova I, Schmit A C, Schubert I (Eds.) Front. Plant Sci., Special Research Topic “Centromere and telomere biology of Plants” Vol. 6. (2015)
Li Y H, Reif J C, Ma Y S, Hong H L, Liu Z X, Chang R Z, Qiu L J Targeted association mapping demonstrating the complex molecular genetics of fatty acid formation in soybean. BMC Genomics 16 (2015) 841. dx.doi.org/10.1186/s12864-015-2049-4
Longin C F H, Reif J C, Würschum T Optimum breeding strategies for hybrid wheat. In: Vereinigung der Pflanzenzüchter und Saatgutkaufleute Österreichs (Ed.): Zukünftiges Saatgut - Produktion, Vermarktung, Nutzung und Konservierung, 65. Tagung, 24. -26. November 2014. (Series: Tagung / Vereinigung der Pflanzenzüchter und Saatgutkaufleute Österreichs, Vol. 65) Irdning: Lehr- und Forschungsanstalt für Landwirtschaft Raumberg-Gumpenstein (2015) 59-60. ISBN 978-3-902849-22-9
Maurer A, Draba V, Jiang Y, Schnaithmann F, Sharma R, Schumann E, Kilian B, Reif J C, Pillen K Modelling the genetic architecture of flowering time control in barley through nested association mapping. BMC Genomics 16 (2015) 290. dx.doi.org/10.1186/s12864-015-1459-7
Mette F M, Gils M, Longin C F H, Reif J C Hybrid breeding in wheat. In: Ogihara Y, Takumi S, Handa H (Eds.): Advances in wheat genetics: from genome to field: proceedings of the 12th International Wheat Genetics Symposium. Japan: Springer (2015) 225-232. dx.doi.org/10.1007/978-4-431-55675-6_24 ISBN 978-4-431-55674-9
Mirdita V, He S, Zhao Y, Korzun V, Bothe R, Ebmeyer E, Reif J C, Jiang Y Potential and limits of whole genome-prediction of resistance to Fusarium head blight and Septoria tritici blotch in a vast Central European elite winter wheat population. Theor. Appl. Genet. 128 (2015) 2471-2481. dx.doi.org/10.1007/s00122-015-2602-1
Mirdita V, Liu G, Zhao Y, Miedaner T, Longin C F, Gowda M, Mette M F, Reif J C Genetic architecture is more complex for resistance to Septoria tritici blotch than to Fusarium head blight in Central European winter wheat. BMC Genomics 16 (2015) 430. dx.doi.org/10.1186/s12864-015-1628-8
Mühleisen J Differences in yield performance and yield stability between hybrids and inbred lines of wheat, barley, and triticale. (PhD Thesis, kumulativ) Stuttgart, Universität Hohenheim, Fakultät Agrarwissenschaften (2015) 36 pp.
Mühleisen J, Piepho H P, Maurer H P, Reif J C Yield performance and stability of CMS-based triticale hybrids. Theor. Appl. Genet. 128 (2015) 291-301. dx.doi.org/10.1007/s00122-014-2429-1
Tran D T Cytogenetic analyses of the genus Genlisea, which is characterized by striking genome plasticity. (PhD Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät I Biowissenschaften (2015) 92 pp.
Tran D T, Cao H X, Jovtchev G, Novák P, Vu G T H, Macas J, Schubert I, Fuchs J Chromatin organization and cytological features of carnivorous Genlisea species with large genome size differences. Front. Plant Sci. 6 (2015) 613. dx.doi.org/10.3389/fpls.2015.00613
Tran T D, Cao H X, Jovtchev G, Neumann P, Novak P, Fojtova M, Vu G T, Macas J, Fajkus J, Schubert I, Fuchs J Centromere and telomere sequence alterations reflect the rapid genome evolution within the carnivorous plant genus Genlisea. Plant J. 84 (2015) 1087-1099. dx.doi.org/10.1111/tpj.13058
van Hoeck A, Horemans N, Monsieurs P, Cao H X, Vandenhove H, Blust R The first draft genome of the aquatic model plant Lemna minor opens the route for future stress physiology research and biotechnological applications. Biotechnol. Biofuels 8 (2015) 188. dx.doi.org/10.1186/s13068-015-0381-1
Vu G T H, Schmutzer T, Bull F, Cao H X, Fuchs J, Tran D T, Jovtchev G, Pistrick K, Stein N, Pecinka A, Neumann P, Novák P, Macas J, Dear P H, Blattner F R, Scholz U, Schubert I Comparative genome analysis reveals divergent genome size evolution in a carnivorous plant genus. Plant Genome 8 (2015) 1-14. dx.doi.org/10.3835/plantgenome2015.04.0021
Wang Y, Mette M F, Miedaner T, Wilde P, Reif J C, Zhao Y First insights into the genotype-phenotype map of phenotypic stability in rye. J. Exp. Bot. 66 (2015) 3275-3284. dx.doi.org/10.1093/jxb/erv145
Wicker T, Wing R A, Schubert I Recurrent sequence exchange between homeologous grass chromosomes. Plant J. 84 (2015) 747-759. dx.doi.org/10.1111/tpj.13040
Zhao Y, Li Z, Liu G, Jiang Y, Maurer H P, Würschum T, Mock H-P, Matros A, Ebmeyer E, Schachschneider R, Kazman E, Schacht J, Gowda M, Longin C F, Reif J C Genome-based establishment of a high-yielding heterotic pattern for hybrid wheat breeding. Proc. Natl. Acad. Sci. U.S.A. 112 (2015) 15624-15629. dx.doi.org/10.1073/pnas.1514547112
Zhao Y, Mette M F, Reif J C Genomic selection in hybrid breeding. Plant Breed. 134 (2015) 1-10. dx.doi.org/10.1111/pbr.12231

Publications Jochen C. Reif

2012

Alheit, K.V., H.P. Maurer, J.C. Reif, M.R. Tucker, V. Hahn, E.A. Weissmann, and T. Würschum. 2012. Genome-wide evaluation of genetic diversity and linkage disequilibrium in winter and spring triticale (x Triticosecale Wittmack). BMC Genomics 13:235.


Cai, H., F. Chen1, G. Mi, F. Zhang, H.P. Maurer, W. Liu, J.C. Reif, and L. Yuan. 2012. Mapping QTLs for root system architecture of maize in the field at different developmental stages. Theoretical and Applied Genetics 125:1313-1324.


Gowda, M., C.F.H. Longin, V. Lein, and J.C. Reif. 2012. Relevance of specific versus general combining ability in wheat (Triticum aestivum L.). Crop Science 52:2494-2500.


Gowda, M., Y. Zhao, H.P. Maurer, E.A. Weissmann, T. Würschum, and J.C. Reif. 2012. Best linear unbiased prediction of triticale hybrid performance. Euphytica DOI 10.1007/s10681-012-0784-z.


Hübner, M., P. Wilde, B. Schmiedchen, P. Dopierala, M. Gowda, and J.C. Reif, T. Miedaner. 2012. Hybrid rye performance under natural drought stress in Europe. Theoretical and Applied Genetics DOI 10.1007/s00122-012-1994-4.


Liu, W., J.C. Reif, N. Ranc, G. D. Porta, and T. Würschum. 2012. Comparison of biometrical approaches for QTL detection in multiple segregating families. Theoretical and Applied Genetics 125:987-998.


Longin, CFH, J. Mühleisen, H.P. Maurer, H. Zhang, M. Gowda, and J.C. Reif. 2012. Hybrid breeding in autogamous cereals. Theoretical and Applied Genetics 125:1087-1096. 


Miedaner, T., M. Hübner, V. Korzun, B. Schmiedchen, E. Bauer, G. Haseneyer, P. Wilde, and J.C. Reif. 2012. Genetic architecture of complex agronomic traits in rye. BMC Genomics 13:706. 


Reif, J.C., Y. Zhao, T. Würschum, M. Gowda, and V. Hahn. 2012. Genomic prediction of sunflower hybrid performance. Plant Breeding. DOI:10.1111/pbr.12007.

 

Schwegler, D.D., W. Liu, M. Gowda, T. Würschum, B. Schulz, and J.C. Reif. 2012. Multiple-line cross quantitative trait locus mapping in sugar beet (Beta vulgaris L.). Molecular Breeding DOI 10.1007/s11032-012-9788-6.


Steinhoff, J., W. Liu, H.P. Maurer, T. Würschum, C.F.H. Longin, N. Ranc, and J.C. Reif. 2012. Exploitation of elite maize (Zea mays L.) germplasm across maturity zones. Crop Science 52:1534-1542.


Steinhoff, J., W. Liu, J.C. Reif, G. D. Porta, N. Ranc, and T. Würschum. 2012. Genetic architecture of flowering time in elite maize. Theoretical and Applied Genetics 125:1539-1551.


Talas, F., T. Würschum, J.C. Reif, H.K. Parzies, and T. Miedaner. 2012. Association of single nucleotide polymorphic sites in candidate genes with aggressiveness and deoxynivalenol production in Fusarium graminearum causing wheat head blight. BMC Genetics 13:14.


Würschum, T., W. Liu, M. Gowda, H.P. Maurer, H.P. Piepho, S. Fischer, A. Schechert, J.C. Reif. 2012. Comparison of statistical models for joint linkage association mapping in sugar beet. Heredity 108:332-340.


Würschum, T., W. Liu, H.P. Maurer, S. Abel, and J.C. Reif. 2012. Dissecting the genetic architecture of agronomic traits in multiple segregating populations in rapeseed (Brassica napus L.). Theoretical and Applied Genetics 124:153-161.


Würschum, T., H.P. Maurer, F. Dreyer, and J.C. Reif. 2012. Effect of inter- and intragenic epistasis on the heritability of complex traits. Theoretical and Applied Genetics DOI 10.1007/s00122-012-1991-7.


Würschum, T., J.C. Reif, H.P. Maurer, and M. Tucker. 2012. Improved efficiency of doubled haploid generation in hexaploid triticale by in vitro chromosome doubling. BMC Plant Biology BMC Plant Biology 2012, 12:109.


Zhao, Y., M. Gowda, W. Liu, T. Würschum, H.P. Maurer, C.F.H. Longin, N. Ranc, H. P. Piepho, and J.C. Reif. 2012. Choice of shrinkage parameter and prediction of genomic breeding values in elite maize breeding populations. Plant Breeding DOI: 10.1111/pbr.12008.


Zhao, Y., M. Gowda, W. Liu, T. Würschum, H.P. Maurer, C.F.H. Longin, N. Ranc, and J.C. Reif. 2012. Accuracy of genomic selection in European maize elite breeding populations. Theoretical and Applied Genetics 124:769-776.


Zhao, Y., M. Gowda, C.F.H. Longin, T. Würschum, N. Ranc, and J.C. Reif. 2012. Impact of selective genotyping in the training population on accuracy and bias of genomic selection. Theoretical and Applied Genetics 125:707-713.



2011

Alheit, K.V., J.C. Reif, H.P. Maurer, V. Hahn, E.A. Weissmann, T. Miedaner, and Tobias Würschum. 2011. A high-density DArT marker consensus genetic linkage map enables detection of segregation distortion loci in triticale (x Triticosecale Wittmack). BMC Genomics 12:380.


Gowda M., V. Hahn, J.C. Reif, C.F.H. Longin, K. Alheit, and H.P. Maurer. 2011. Potential for simultaneous improvement of grain and biomass yield in central European winter triticale germplasm. Field Crops Research 121:153-157.


Liu, W., M. Gowda, J. Steinhoff, H.P. Maurer, T. Würschum, C.F.H. Longin, F. Cossic, and J.C. Reif. 2011. Association mapping in an elite maize breeding population. Theoretical and Applied Genetics 123:847-858.


Longin, C.F.H., W. Liu, and J.C. Reif. 2011. Association of progeny variance and genetic distances among parents and implications for the design of elite maize breeding programs. Maydica 56:227-232. 


Miedaner, T., T. Würschum, H.P. Maurer, V. Korzun, V. Ebmeyer, and J.C. Reif. 2011. Association mapping for Fusarium head blight resistance in soft European winter wheat. Molecular Breeding DOI 10.1007/s11032-010-9516-z.


Reif, J.C., M. Gowda, H.P. Maurer, C.F.H. Longin, V. Korzun, E. Ebmeyer, R. Bothe, C. Pietsch, and T. Würschum. 2011. Genetic architecture of quality traits in soft winter wheat. Theoretical and Applied Genetics 122:961-970.


Reif, J.C., H.P Maurer, V. Korzun, E. Ebmeyer, T. Miedaner, and T. Würschum. 2011. Mapping QTLs with main and epistatic effects underlying grain yield and heading time in soft winter wheat. Theoretical and Applied Genetics 123:283-292.


Schilly, A., P. Risser, E. Ebmeyer, L. Hartl, J.C. Reif, T. Würschum, and T. Miedaner. 2011. Stability of adult-plant resistance to Septoria tritici in 24 European winter wheat varieties across nine field environments. Journal of Phytopathology 159:411-416.


Steinhoff, J., W. Liu, H.P. Maurer, T. Würschum, C.F.H. Longin, N. Ranc, and J.C. Reif. 2011. Multiple-line cross QTL-mapping in European elite maize. Crop Science 52:2505-2516.


Van Inghelandt, D., J.C. Reif, B. S. Dhillon, P. Flament, and A. E. Melchinger. 2011. Extent and genome-wide distribution of linkage disequilibrium in commercial maize germplasm. Theoretical and Applied Genetics 123:11-20.


Würschum, T., H.P. Maurer, T. Kraft, G. Janssen, C. Nilsson, and J.C. Reif. 2011. Genome-wide association mapping of agronomic traits in sugar beet. Theoretical and Applied Genetics 123:1121-1131.


Würschum, T., H.P. Maurer, B. Schulz, J. Möhring, and J.C. Reif. 2011. Genome-wide association mapping reveals epistasis and genetic interaction networks in sugar beet. Theoretical and Applied Genetics 123:109-118.