Publikationen

Autoren Titel
2017
Baroux C, Pecinka A, Fuchs J, Kreth G, Schubert I, Grossniklaus U Non-random chromosome arrangement in triploid endosperm nuclei. Chromosoma 126 (2017) 115-124. dx.doi.org/10.1007/s00412-016-0578-5
Beukert U Genome-based identification of heterotic patterns in rice. (Master Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät III, Institut für Agrar- und Ernährungswissenschaften (2017) 31 pp.
Beukert U, Li Z, Liu G, Zhao Y, Ramachandra N, Mirdita V, Pita F, Pillen K, Reif J C Genome-based identification of heterotic patterns in rice. Rice 10 (2017) 22. dx.doi.org/10.1186/s12284-017-0163-4
He S Potentials and limits of genomics-assisted wheat breeding. (PhD Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Institut für Agrar- und Ernährungswissenschaften der Naturwissenschaftlichen Fakultät III (2017) 43 pp.
He S, Reif J C, Korzun V, Bothe R, Ebmeyer E, Jiang Y Genome-wide mapping and prediction suggests presence of local epistasis in a vast elite winter wheat populations adapted to Central Europe. Theor. Appl. Genet. 130 (2017) 635–647. dx.doi.org/10.1007/s00122-016-2840-x
Hoang P T N, Schubert I Reconstruction of chromosome rearrangements between the two most ancestral duckweed species Spirodela polyrhiza and S. intermedia. Chromosoma 126 (2017) 729-739. dx.doi.org/10.1007/s00412-017-0636-7
Jiang Y, Schmidt R H, Zhao Y, Reif J C A quantitative genetic framework highlights the role of epistatic effects for grain-yield heterosis in bread wheat. Nat. Genet. 49 (2017) 1741-1746. dx.doi.org/10.1038/ng.3974
Jiang Y, Schulthess A W, Rodemann B, Ling J, Plieske J, Kollers S, Ebmeyer E, Korzun V, Argillier O, Stiewe G, Ganal M W, Röder M S, Reif J C Validating the prediction accuracies of marker-assisted and genomic selection of Fusarium head blight resistance in wheat using an independent sample. Theor. Appl. Genet. 130 (2017) 471-482. dx.doi.org/10.1007/s00122-016-2827-7
Li Y-h, Reif J C, Hong H-l, Li H-h, Liu Z-x, Ma Y-s, Li J, Tian Y, Li Y-f, Li W-b, Qiu L-j Genome-wide association mapping of QTL underlying seed oil and protein contents of a diverse panel of soybean accessions. Plant Sci. 266 (2017) 95-101. dx.doi.org/10.1016/j.plantsci.2017.04.013
Li Z, Philipp N, Spiller M, Stiewe G, Reif J C, Zhao Y Genome-wide prediction of the performance of three-way hybrids in barley. Plant Genome 10 (2017) dx.doi.org/10.3835/plantgenome2016.05.0046
Liu G, Zhao Y, Mirdita V, Reif J C Efficient strategies to assess yield stability in winter wheat. Theor. Appl. Genet. 130 (2017) 1587-1599. dx.doi.org/10.1007/s00122-017-2912-6
Liu P, Zhao Y, Liu G, Wang M, Hu D, Hu J, Meng J, Reif J C, Zou J Hybrid performance of an immortalized F2 rapeseed population is driven by additive, dominance, and epistatic effects. Front. Plant Sci. 8 (2017) 815. dx.doi.org/10.3389/fpls.2017.00815
Matros A, Liu G, Hartmann A, Jiang Y, Zhao Y, Wang H, Ebmeyer E, Korzun V, Schachschneider R, Kazman E, Schacht J, Longin F, Reif J C, Mock H-P Genome-metabolite associations revealed low heritability, high genetic complexity, and causal relations for leaf metabolites in winter wheat (Triticum aestivum). J. Exp. Bot. 68 (2017) 415-428. dx.doi.org/10.1093/jxb/erw441
Miedaner T, Schulthess A W, Gowda M, Reif J C, Longin C F H High accuracy of predicting hybrid performance of Fusarium head blight resistance by mid-parent values in wheat. Theor. Appl. Genet. 130 (2017) 461-470. dx.doi.org/10.1007/s00122-016-2826-8
Milker S Untersuchung von männlicher Sterilität und Selbstinkompatibilität bei Matricaria chamomilla L. zur Bestäubungslenkung. (Bachelor Thesis) Jena, Ernst-Abbe-Hochschule Jena, Fachbereich Medizintechnik und Biotechnologie, Studiengang Biotechnologie (2017) 56 pp.
Muqaddasi Q H, Reif J C, Li Z, Basnet B R, Dreisigacker S, Röder M S Genome-wide association mapping and genome-wide prediction of anther extrusion in CIMMYT spring wheat. Euphytica 213 (2017) 73. dx.doi.org/10.1007/s10681-017-1863-y
Muraya M M, Chu J, Zhao Y, Junker A, Klukas C, Reif J C, Altmann T Genetic variation of growth dynamics in maize (Zea mays L.) revealed through automated non-invasive phenotyping. Plant J. 89 (2017) 366–380. dx.doi.org/10.1111/tpj.13390
Neumann K, Zhao Y, Chu J, Keilwagen J, Reif J C, Kilian B, Graner A Genetic architecture and temporal patterns of biomass accumulation in spring barley revealed by image analysis. BMC Plant Biol. 17 (2017) 137. dx.doi.org/10.1186/s12870-017-1085-4
Otto L-G, Mondal P, Brassac J, Preiss S, Degenhardt J, He S, Reif J C, Sharbel T F Use of genotyping-by-sequencing to determine the genetic structure in the medicinal plant chamomile, and to identify flowering time and alpha-bisabolol associated SNP-loci by genome-wide association mapping. BMC Genomics 18 (2017) 599. dx.doi.org/10.1186/s12864-017-3991-0
Rembe M Genome-wide association mapping and genome-wide prediction of anther extrusion in a Nested Association Mapping (NAM) population of wild x cultivated barley. (Master Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät III, Institut für Agrar- und Ernährungswissenschaften (2017) 60 pp.
Sandmann M Functional characterization of AtKNL2 reveals the path for its centromere localization and its impact on the centromere environment. (PhD Thesis, kumulativ) Jena, Friedrich-Schiller-Universität Jena, Biologisch-Pharmazeutische Fakultät (2017) 165? pp.
Sandmann M, Lermontova I Kinetochors and centromeres, the structural basis for reproduction. Endocytobiosis Cell Res. 28 (2017) 38-49.
Sandmann M, Talbert P, Demidov D, Kuhlmann M, Rutten T, Conrad U, Lermontova I Targeting of A. thaliana KNL2 to centromeres depends on the conserved CENPC-k motif in its C-terminus. Plant Cell 29 (2017) 144-155. dx.doi.org/10.1105/tpc.16.00720
Schmidt R, Boudichevskaia A, Cao H X, He S, Meyer R C, Reif J C Extracting genotype information of Arabidopsis thaliana recombinant inbred lines from transcript profiles established with high-density oligonucleotide arrays. Plant Cell Rep. 36 (2017) 1871-1881. dx.doi.org/10.1007/s00299-017-2200-6
Schubert I Some past developments and open questions in understanding the biology of nucleus. The Nucleus 60 (2017) 247-249. dx.doi.org/10.1007/s13237-017-0217-4
Schulthess A W, Reif J C, Ling J, Plieske J, Kollers S, Ebmeyer E, Korzun V, Argillier O, Stiewe G, Ganal M W, Röder M S, Jiang Y The roles of pleiotropy and close linkage as revealed by association mapping of yield and correlated traits of wheat (Triticum aestivum L.). J. Exp. Bot. 68 (2017) 4089-4101. dx.doi.org/10.1093/jxb/erx214
Schulthess A W, Zhao Y, Reif J C Genomic selection in hybrid breeding. In: Varshney R K, Roorkiwal M, Sorrells M E (Eds.): Genomic selection for crop improvement: new molecular breeding strategies for crop improvement. Cham: Springer (2017) 149-183. dx.doi.org/10.1007/978-3-319-63170-7_7 ISBN 978-3-319-63170-7
Tran T D, Šimková H, Schmidt R, Doležel J, Schubert I, Fuchs J Chromosome identification for the carnivorous plant Genlisea margaretae. Chromosoma 126 (2017) 389–397. dx.doi.org/10.1007/s00412-016-0599-0
Varshney R K, Shi C, Thudi M, Mariac C, Wallace J, Qi P, Zhang H, Zhao Y, Wang X, Rathore A, Srivastava R K, Chitikineni A, Fan G, Bajaj P, Punnuri S, Gupta S K, Wang H, Jiang Y, Couderc M, Katta M A V S K, Paudel D R, Mungra K D, Chen W, Harris-Shultz K R, Garg V, Desai N, Doddamani D, Kane N A, Conner J A, Ghatak A, Chaturvedi P, Subramaniam S, Yadav O P, Berthouly-Salazar C, Hamidou F, Wang J, Liang X, Clotault J, Upadhyaya H D, Cubry P, Rhone B, Gueye M C, Sunkar R, Dupuy C, Sparvoli F, Cheng S, Mahala R S, Singh B, Yadav R S, Lyons E, Datta S K, Hash C T, Devos K M, Buckler E, Bennetzen J L, Paterson A H, Ozias-Akins P, Grando S, Wang J, Mohapatra T, Weckwerth W, Reif J C, Liu X, Vigouroux Y, Xu X Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nat. Biotechnol. 35 (2017) 969–976. dx.doi.org/10.1038/nbt.3943
Vu G T H, Cao H X, Fauser F, Reiss B, Puchta H, Schubert I Endogenous sequence patterns predispose the repair modes of CRISPR/Cas9-induced DNA double strand breaks in Arabidopsis thaliana. Plant J. 92 (2017) 57-67. dx.doi.org/10.1111/tpj.13634
Vu G T H, Cao H X, Reiss B, Schubert I Deletion-bias in DNA double-strand break repair differentially contributes to plant genome shrinkage. New Phytol. 214 (2017) 1712–1721. dx.doi.org/10.1111/nph.14490
Wang W, Cao X H, Miclăuș M, Xiong W, Xu J-H The promise of agriculture genomics. Int. J. Genomics 2017 (2017) Art. ID 9743749. dx.doi.org/10.1155/2017/9743749
2016
Beuchel C F Potential and limits of marker-assisted selection and genome-wide prediction for powdery mildew and tan spot resistance in a large European elite winter wheat population. (Master Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät III, Institut für Agrar- und Ernährungswissenschaften (2016) 36 pp.
Campos K M, Royo C, Schulthess A, Villegas D, Matus I, Ammar K, Schwember A R Association of phytoene synthase Psy1-A1 and Psy1-B1 allelic variants with semolina yellowness in durum wheat (Triticum turgidum L. var. durum). Euphytica 207 (2016) 109-117. dx.doi.org/10.1007/s10681-015-1541-x
Cao H X, Vu G T H, Wang W, Appenroth K J, Messing J, Schubert I The map-based genome sequence of Spirodela polyrhiza aligned with its chromosomes, a reference for karyotype evolution. New Phytol. 209 (2016) 354-363. dx.doi.org/10.1111/nph.13592
Cao H X, Wang W, Le H T T, Vu G T H The power of CRISPR-Cas9-induced genome editing to speed up plant breeding. Int. J. Genomics 2016 (2016) Article ID 5078796. dx.doi.org/10.1155/2016/5078796
Chen W, Kastner C, Nowara D, Oliveira-Garcia E, Rutten T, Zhao Y, Deising H B, Kumlehn J, Schweizer P Host-induced silencing of Fusarium culmorum genes protects wheat from infection. J. Exp. Bot. 67 (2016) 4979-4991. dx.doi.org/10.1093/jxb/erw263
Fransz P, Linc G, Lee C R, Aflitos S A, Lasky J R, Toomajian C, Ali H, Peters J, van Dam P, Ji X, Kuzak M, Gerats T, Schubert I, Schneeberger K, Colot V, Martienssen R, Koornneef M, Nordborg M, Juenger T E, de Jong H, Schranz M E Molecular, genetic and evolutionary analysis of a paracentric inversion in Arabidopsis thaliana. Plant J. 88 (2016) 159-178. dx.doi.org/10.1111/tpj.13262
He S, Schulthess A W, Mirdita V, Zhao Y, Korzun V, Bothe R, Ebmeyer E, Reif J C, Jiang Y Genomic selection in a commercial winter wheat population. Theor. Appl. Genet. 129 (2016) 641-651. dx.doi.org/10.1007/s00122-015-2655-1
Lermontova I, Fajkus J, Schmit A C, Schubert I (Eds.) Front. Plant Sci., Special Research Topic “Centromere and telomere biology of Plants” Vol. 7. (2016) pp.
Li Y-h, Shi X-h, Li H-h, Reif J C, Wang J-j, Liu Z-x, He S, Yu B-s, Qiu L-j Dissecting the genetic basis of resistance to soybean cyst nematode combining linkage and linkage disequilibrium mapping. Plant Genome 9 (2016) dx.doi.org/10.3835/plantgenome2015.04.0020
Liu G, Zhao Y, Gowda M, Longin C F, Reif J C, Mette M F Predicting hybrid performances for quality traits through genomic-assisted approaches in Central European wheat. PLoS One 11 (2016) e0158635. dx.doi.org/10.1371/journal.pone.0158635
Liu W, Leiser W L, Reif J C, Tucker M R, Losert D, Weissmann S, Hahn V, Maurer H P, Würschum T Multiple-line cross QTL mapping for grain yield and thousand kernel weight in triticale. Plant Breed. 135 (2016) 567–573. dx.doi.org/10.1111/pbr.12400
Ma Y, Reif J C, Jiang Y, Wen Z, Wang D, Liu Z, Guo Y, Wei S, Wang S, Yang C, Wang H, Yang C, Lu W, Xu R, Zhou R, Wang R, Sun Z, Chen H, Zhang W, Wu J, Hu G, Liu C, Luan X, Fu Y, Guo T, Han T, Zhang M, Sun B, Zhang L, Chen W, Wu C, Sun S, Yuan B, Zhou X, Han D, Yan H, Li W, Qiu L Potential of marker selection to increase prediction accuracy of genomic selection in soybean (Glycine max L.). Mol. Breed. 36 (2016) 113. dx.doi.org/10.1007/s11032-016-0504-9
Philipp N, Liu G, Zhao Y, He S, Spiller M, Stiewe G, Pillen K, Reif J C, Li Z Genomic prediction of barley hybrid performance. Plant Genome 9 (2016) dx.doi.org/10.3835/plantgenome2016.02.0016
Sandmann M, Fuchs J, Lermontova I Immunolabeling of nuclei/chromosomes in Arabidopsis thaliana. In: Caillaud M-C (Ed.): Plant cell division: methods and protocols. (Series: Methods in molecular biology, Vol. 1370) New York [u.a.]: Humana Press (2016) 127-135. dx.doi.org/10.1007/978-1-4939-3142-2_10 ISBN 978-1-4939-3141-5
Schubert I We have an inflation of review papers – for what are reviews good? Front. Plant Sci. 7 (2016) 88. dx.doi.org/10.3389/fpls.2016.00088
Schubert I, Vu G T H Genome stability and evolution: attempting a holistic view. Trends Plant Sci. 21 (2016) 749-757. dx.doi.org/10.1016/j.tplants.2016.06.003
Schulthess A W, Wang Y, Miedaner T, Wilde P, Reif J C, Zhao Y Multiple-trait- and selection indices-genomic predictions for grain yield and protein content in rye for feeding purposes. Theor. Appl. Genet. 129 (2016) 273-287. dx.doi.org/10.1007/s00122-015-2626-6
Vargas V H, Schulthess A, Royo C, Matus I, Schwember A R Transcripts levels of Phytoene synthase 1 (Psy-1) are associated to semolina yellowness variation in durum wheat (Triticum turgidum L. ssp. durum). J. Cer. Sci. 68 (2016) 155-163. dx.doi.org/10.1016/j.jcs.2016.01.011
Wang Y Genome-wide prediction of testcross performance and phenotypic stability for important agronomic and quality traits in elite hybrid rye (Secale cereale L.). (PhD Thesis, kumulativ) Stuttgart, Landessaatzuchtanstalt der Universität Hohenheim (2016) 35 pp.
Watanabe K, Breier U, Hensel G, Kumlehn J, Schubert I, Reiss B Stable gene replacement in barley by targeted double-strand break induction. J. Exp. Bot. 67 (2016) 1433-1445. dx.doi.org/10.1093/jxb/erv537
Weimer A K, Demidov D, Lermontova I, Beeckman T, Van Damme D Aurora kinases throughout plant development. Trends Plant Sci. 21 (2016) 69-79. dx.doi.org/10.1016/j.tplants.2015.10.001
Zou J, Zhao Y, Liu P, Shi L, Wang X, Wang M, Meng J, Reif J C Seed quality traits can be predicted with high accuracy in Brassica napus using genomic data. PLoS One 11 (2016) e0166624. dx.doi.org/10.1371/journal.pone.0166624
2015
Batzenschlager M, Lermontova I, Schubert V, Fuchs J, Berr A, Koini M A, Houlné G, Herzog E, Rutten T, Alioua A, Fransz P, Schmit A-C, Chabouté M-E Arabidopsis MZT1 homologs GIP1 and GIP2 are essential for centromere architecture. Proc. Natl. Acad. Sci. U.S.A. 112 (2015) 8656–8660. dx.doi.org/10.1073/pnas.1506351112
Cao H X, Schmutzer T, Scholz U, Pecinka A, Schubert I, Vu G T H Metatranscriptome analysis reveals host-microbiome interactions in traps of carnivorous Genlisea species. Front. Microbiol. 6 (2015) 526. dx.doi.org/10.3389/fmicb.2015.00526
Cao H X, Vu G T, Wang W, Messing J, Schubert I Chromatin organisation in duckweed interphase nuclei in relation to the nuclear DNA content. Plant Biol. 17 (2015) 120-124. dx.doi.org/10.1111/plb.12194
He S, Wang S, Fu W, Ding X, Zhang Q Imputation of missing genotypes from low- to high-density SNP panel in different population designs. Anim. Genet. 46 (2015) 1-7. dx.doi.org/10.1111/age.12236
He S, Zhao Y, Mette M F, Bothe R, Ebmeyer E, Sharbel T F, Reif J C, Jiang Y Prospects and limits of marker imputation in quantitative genetic studies in European elite wheat (Triticum aestivum L.). BMC Genomics 16 (2015) 168. dx.doi.org/10.1186/s12864-015-1366-y
Jiang Y, Reif J C Modelling epistasis in genomic selection. Genetics 201 (2015) 759-768. dx.doi.org/10.1534/genetics.115.177907
Jiang Y, Zhao Y, Rodemann B, Plieske J, Kollers S, Korzun V, Ebmeyer E, Argillier O, Hinze M, Ling J, Röder M S, Ganal M W, Mette M F, Reif J C Potential and limits to unravel the genetic architecture and predict the variation of Fusarium head blight resistance in European winter wheat (Triticum aestivum L.). Heredity 114 (2015) 318-326. dx.doi.org/10.1038/hdy.2014.104
Lermontova I, Sandmann M, Mascher M, Schmit A C, Chabouté M E Centromeric chromatin and its dynamics in plants. Plant J. 83 (2015) 4-17. dx.doi.org/10.1111/tpj.12875
Lermontova I, Schmit A C, Schubert I (Eds.) Front. Plant Sci., Special Research Topic “Centromere and telomere biology of Plants” Vol. 6. (2015)
Li Y H, Reif J C, Ma Y S, Hong H L, Liu Z X, Chang R Z, Qiu L J Targeted association mapping demonstrating the complex molecular genetics of fatty acid formation in soybean. BMC Genomics 16 (2015) 841. dx.doi.org/10.1186/s12864-015-2049-4
Longin C F H, Reif J C, Würschum T Optimum breeding strategies for hybrid wheat. In: Vereinigung der Pflanzenzüchter und Saatgutkaufleute Österreichs (Ed.): Zukünftiges Saatgut - Produktion, Vermarktung, Nutzung und Konservierung, 65. Tagung, 24. -26. November 2014. (Series: Tagung / Vereinigung der Pflanzenzüchter und Saatgutkaufleute Österreichs, Vol. 65) Irdning: Lehr- und Forschungsanstalt für Landwirtschaft Raumberg-Gumpenstein (2015) 59-60. ISBN 978-3-902849-22-9
Maurer A, Draba V, Jiang Y, Schnaithmann F, Sharma R, Schumann E, Kilian B, Reif J C, Pillen K Modelling the genetic architecture of flowering time control in barley through nested association mapping. BMC Genomics 16 (2015) 290. dx.doi.org/10.1186/s12864-015-1459-7
Mette F M, Gils M, Longin C F H, Reif J C Hybrid breeding in wheat. In: Ogihara Y, Takumi S, Handa H (Eds.): Advances in wheat genetics: from genome to field: proceedings of the 12th International Wheat Genetics Symposium. Japan: Springer (2015) 225-232. dx.doi.org/10.1007/978-4-431-55675-6_24 ISBN 978-4-431-55674-9
Mirdita V, He S, Zhao Y, Korzun V, Bothe R, Ebmeyer E, Reif J C, Jiang Y Potential and limits of whole genome-prediction of resistance to Fusarium head blight and Septoria tritici blotch in a vast Central European elite winter wheat population. Theor. Appl. Genet. 128 (2015) 2471-2481. dx.doi.org/10.1007/s00122-015-2602-1
Mirdita V, Liu G, Zhao Y, Miedaner T, Longin C F, Gowda M, Mette M F, Reif J C Genetic architecture is more complex for resistance to Septoria tritici blotch than to Fusarium head blight in Central European winter wheat. BMC Genomics 16 (2015) 430. dx.doi.org/10.1186/s12864-015-1628-8
Mühleisen J Differences in yield performance and yield stability between hybrids and inbred lines of wheat, barley, and triticale. (PhD Thesis, kumulativ) Stuttgart, Universität Hohenheim, Fakultät Agrarwissenschaften (2015) 36 pp.
Mühleisen J, Piepho H P, Maurer H P, Reif J C Yield performance and stability of CMS-based triticale hybrids. Theor. Appl. Genet. 128 (2015) 291-301. dx.doi.org/10.1007/s00122-014-2429-1
Tran D T Cytogenetic analyses of the genus Genlisea, which is characterized by striking genome plasticity. (PhD Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät I Biowissenschaften (2015) 92 pp.
Tran D T, Cao H X, Jovtchev G, Novák P, Vu G T H, Macas J, Schubert I, Fuchs J Chromatin organization and cytological features of carnivorous Genlisea species with large genome size differences. Front. Plant Sci. 6 (2015) 613. dx.doi.org/10.3389/fpls.2015.00613
Tran T D, Cao H X, Jovtchev G, Neumann P, Novak P, Fojtova M, Vu G T, Macas J, Fajkus J, Schubert I, Fuchs J Centromere and telomere sequence alterations reflect the rapid genome evolution within the carnivorous plant genus Genlisea. Plant J. 84 (2015) 1087-1099. dx.doi.org/10.1111/tpj.13058
van Hoeck A, Horemans N, Monsieurs P, Cao H X, Vandenhove H, Blust R The first draft genome of the aquatic model plant Lemna minor opens the route for future stress physiology research and biotechnological applications. Biotechnol. Biofuels 8 (2015) 188. dx.doi.org/10.1186/s13068-015-0381-1
Vu G T H, Schmutzer T, Bull F, Cao H X, Fuchs J, Tran D T, Jovtchev G, Pistrick K, Stein N, Pecinka A, Neumann P, Novák P, Macas J, Dear P H, Blattner F R, Scholz U, Schubert I Comparative genome analysis reveals divergent genome size evolution in a carnivorous plant genus. Plant Genome 8 (2015) 1-14. dx.doi.org/10.3835/plantgenome2015.04.0021
Wang Y, Mette M F, Miedaner T, Wilde P, Reif J C, Zhao Y First insights into the genotype-phenotype map of phenotypic stability in rye. J. Exp. Bot. 66 (2015) 3275-3284. dx.doi.org/10.1093/jxb/erv145
Wicker T, Wing R A, Schubert I Recurrent sequence exchange between homeologous grass chromosomes. Plant J. 84 (2015) 747-759. dx.doi.org/10.1111/tpj.13040
Zhao Y, Li Z, Liu G, Jiang Y, Maurer H P, Würschum T, Mock H-P, Matros A, Ebmeyer E, Schachschneider R, Kazman E, Schacht J, Gowda M, Longin C F, Reif J C Genome-based establishment of a high-yielding heterotic pattern for hybrid wheat breeding. Proc. Natl. Acad. Sci. U.S.A. 112 (2015) 15624-15629. dx.doi.org/10.1073/pnas.1514547112
Zhao Y, Mette M F, Reif J C Genomic selection in hybrid breeding. Plant Breed. 134 (2015) 1-10. dx.doi.org/10.1111/pbr.12231
2014
Alheit K V, Busemeyer L, Liu W, Maurer H P, Gowda M, Hahn V, Weissmann S, Ruckelshausen A, Reif J C, Würschum T Multiple-line cross QTL mapping for biomass yield and plant height in triticale (x Triticosecale Wittmack). Theor. Appl. Genet. 127 (2014) 251-260. dx.doi.org/10.1007/s00122-013-2214-6
Cao H X, Schmidt R Intergenomic single nucleotide polymorphisms as a tool for bacterial artificial chromosome contig building of homoeologous Brassica napus regions. BMC Genomics 15 (2014) 560. dx.doi.org/10.1186/1471-2164-15-560
Demidov D, Lermontova I, Weiss O, Fuchs J, Rutten T, Kumke K, Sharbel T F, van Damme D, de Storme N, Geelen D, Houben A Altered expression of Aurora kinases in Arabidopsis results in aneu- and polyploidization. Plant J. 80 (2014) 449-461. dx.doi.org/10.1111/tpj.12647
Gowda M, Zhao Y, Würschum T, Longin C F, Miedaner T, Ebmeyer E, Schachschneider R, Kazman E, Schacht J, Martinant J P, Mette M F, Reif J C Relatedness severely impacts accuracy of marker-assisted selection for disease resistance in hybrid wheat. Heredity 112 (2014) 552-561. dx.doi.org/10.1038/hdy.2013.139
Kuhlmann M, Finke A, Mascher M, Mette M F DNA methylation maintenance consolidates RNA-directed DNA methylation and transcriptional gene silencing over generations in Arabidopsis thaliana. Plant J. 80 (2014) 269-281. dx.doi.org/10.1111/tpj.12630
Lermontova I, Sandmann M, Demidov D Centromeres and kinetochores of Brassicaceae. Chromosome Res. 22 (2014) 135-152. dx.doi.org/10.1007/s10577-014-9422-z
Li Y H, Liu Y L, Reif J C, Liu Z X, Liu B, Mette M F, Chang R Z, Qiu L J Biparental resequencing coupled with SNP genotyping of a segregating population offers insights into the landscape of recombination and fixed genomic regions in elite soybean. G3-Genes Genom. Genet. 4 (2014) 553-560. dx.doi.org/10.1534/g3.113.009589
Li Y H, Reif J C, Jackson S A, Ma Y S, Chang R Z, Qiu L J Detecting SNPs underlying domestication-related traits in soybean. BMC Plant Biol. 14 (2014) 251. dx.doi.org/10.1186/s12870-014-0251-1
Li Y-H, Liu B, Reif J C, Liu Y-L, Li H-H, Chang R-Z, Qiu L-J Development of insertion and deletion markers based on biparental resequencing for fine mapping seed weight in soybean. Plant Genome 7 (2014) dx.doi.org/10.3835/plantgenome2014.04.0014
Liu W, Gowda M, Reif J C, Hahn V, Ruckelshausen A, Weissmann E A, Maurer H P, Würschum T Genetic dynamics underlying phenotypic development of biomass yield in triticale. BMC Genomics 15 (2014) 458. dx.doi.org/10.1186/1471-2164-15-458
Longin C F H, Reif J C Redesigning the exploitation of wheat genetic resources. Trends Plant Sci. 19 (2014) 631-636. dx.doi.org/10.1016/j.tplants.2014.06.012
Longin C F H, Reif J C, Würschum T Long-term perspective of hybrid versus line breeding in wheat based on quantitative genetic theory. Theor. Appl. Genet. 127 (2014) 1635-1641. dx.doi.org/10.1007/s00122-014-2325-8
Longin C F, Mi X, Melchinger A E, Reif J C, Würschum T Optimum allocation of test resources and comparison of breeding strategies for hybrid wheat. Theor. Appl. Genet. 127 (2014) 2117-2126. dx.doi.org/10.1007/s00122-014-2365-0
Majerová E, Mandáková T, Vu G T H, Fajkus J, Lysak M A, Fojtova M Chromatin features of plant telomeric sequences at terminal versus internal positions. Front. Plant Sci. 5 (2014) 593. dx.doi.org/10.3389/fpls.2014.00593
Miedaner T, Schwegler D D, Wilde P, Reif J C Association between line per se and testcross performance for eight agronomic and quality traits in winter rye. Theor. Appl. Genet. 127 (2014) 33-41. dx.doi.org/10.1007/s00122-013-2198-2
Mühleisen J, Piepho H P, Maurer H P, Longin C F H, Reif J C Yield stability of hybrids versus lines in wheat, barley, and triticale. In: Vereinigung der Pflanzenzüchter und Saatgutkaufleute Österreichs (Ed.): Mutagenese und Hochdurchsatz-Screening CORNET Projekte, 64. Tagung, 25. -26. November 2013. (Series: Tagung / Vereinigung der Pflanzenzüchter und Saatgutkaufleute Österreichs, Vol. 64) Irdning: Lehr- und Forschungsanstalt für Landwirtschaft Raumberg-Gumpenstein (2014) 57-58. ISBN 978-3-902849-00-7
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Mühleisen J, Piepho H P, Maurer H P, Zhao Y, Reif J C Exploitation of yield stability in barley. Theor. Appl. Genet. 127 (2014) 1949-1962. dx.doi.org/10.1007/s00122-014-2351-6
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Ruiz-Rodriguez M D, Avila C M, Torres A M, Fuchs J, Schubert I Anchoring of genetic linkage maps to the chromosome complement of Vicia faba L. Mol. Breed. 33 (2014) 743-748. dx.doi.org/10.1007/s11032-013-9969-y
Schubert V, Lermontova I, Schubert I Loading of the centromeric histone H3 variant during meiosis - how does it differ from mitosis? Chromosoma 123 (2014) 491-497. dx.doi.org/10.1007/s00412-014-0466-9
Schubert V, Rudnik R, Schubert I Chromatin associations in Arabidopsis interphase nuclei. Front. Genet. 5 (2014) 389. dx.doi.org/10.3389/fgene.2014.00389
Schwegler D D, Gowda M, Schulz B, Miedaner T, Liu W X, Reif J C Genotypic correlations and QTL correspondence between line per se and testcross performance in sugar beet (Beta vulgaris L.) for the three agronomic traits beet yield, potassium content, and sodium content. Mol. Breed. 34 (2014) 205-215. dx.doi.org/10.1007/s11032-014-0030-6
Schwegler D D, Wilde P, Korzun V, Reif J C, Miedaner T Correlation between lineper se and testcross Performance for rye: Multi-cross QTL analysis results. In: Vereinigung der Pflanzenzüchter und Saatgutkaufleute Österreichs (Ed.): Mutagenese und Hochdurchsatz-Screening CORNET Projekte, 64. Tagung, 25. -26. November 2013. (Series: Tagung / Vereinigung der Pflanzenzüchter und Saatgutkaufleute Österreichs, Vol. 64) Irdning: Lehr- und Forschungsanstalt für Landwirtschaft Raumberg-Gumpenstein (2014) 59-60. ISBN 978-3-902849-00-7
Vu G T H, Cao H X, Watanabe K, Hensel G, Blattner F R, Kumlehn J, Schubert I Repair of site-specific DNA double-strand breaks in barley occurs via diverse pathways primarily involving the sister chromatid. Plant Cell 26 (2014) 2156-2167. dx.doi.org/10.1105/tpc.114.126607
Wang W, Haberer G, Gundlach H, Gläßer C, Nussbaumer T, Luo M C, Lomsadze A, Borodovsky M, Kerstetter R A, Shanklin J, Byrant D W, Mockler T C, Appenroth K J, Grimwood J, Jenkins J, Chow J, Choi C, Adam C, Cao X H, Fuchs J, Schubert I, Rokhsar D, Schmutz J, Michael T P, Mayer K F, Messing J X The Spirodela polyrhiza genome reveals insights into its neotenous reduction fast growth and aquatic lifestyle. Nat. Commun. 5 (2014) 3311. dx.doi.org/10.1038/ncomms4311
Wang Y, Mette M F, Miedaner T, Gottwald M, Wilde P, Reif J C, Zhao Y The accuracy of prediction of genomic selection in elite hybrid rye populations surpasses the accuracy of marker-assisted selection and is equally augmented by multiple field evaluation locations and test years. BMC Genomics 15 (2014) 556. dx.doi.org/10.1186/1471-2164-15-556
Würschum T, Abel S, Zhao Y Potential of genomic selection rapeseed (Brassica napus L.) breeding. Plant Breed. 133 (2014) 45-51. dx.doi.org/10.1111/pbr.12137
Würschum T, Liu W, Busemeyer L, Tucker M R, Reif J C, Weissmann E A, Hahn V, Ruckelshausen A, Maurer H P Mapping dynamic QTL for plant height in triticale. BMC Genet. 15 (2014) 59. dx.doi.org/10.1186/1471-2156-15-59
Zhao Y, Mette M F, Gowda M, Longin C F, Reif J C Bridging the gap between marker-assisted and genomic selection of heading time and plant height in hybrid wheat. Heredity 112 (2014) 638-645. dx.doi.org/10.1038/hdy.2014.1
2013
Amiteye S, Corral J M, Vogel H, Kuhlmann M, Mette M F, Sharbel T F Novel microRNAs and microsatellite-like small RNAs in sexual and apomictic Boechera species. MicroRNA 2 (2013) 45-62. dx.doi.org/10.2174/2211536611302010006
Busemeyer L, Mentrup D, Möller K, Wunder E, Alheit K, Hahn V, Maurer H P, Reif J C, Würschum T, Müller J, Rahe F, Ruckelshausen A BreedVision - a multi-sensor platform for non-destructive field-based phenotyping in plant breeding. Sensors 13 (2013) 2830-2847. dx.doi.org/10.3390/s130302830
Busemeyer L, Ruckelshausen A, Möller K, Melchinger A E, Alheit K, Maurer H P, Hahn V, Weissmann E A, Reif J C, Würschum T Precision phenotyping of biomass accumulation in triticale reveals temporal genetic patterns of regulation. Sci. Rep. 3 (2013) 2442. dx.doi.org/10.1038/srep02442
Cao H X, Schmidt R Screening of a Brassica napus bacterial artificial chromosome library using highly parallel single nucleotide polymorphism assays. BMC Genomics 14 (2013) e603. dx.doi.org/10.1186/1471-2164-14-603
Gowda M, Zhao Y S, Maurer H P, Weissmann E A, Wüerschum T, Reif J C Best linear unbiased prediction of triticale hybrid performance. Euphytica 191 (2013) 223-230. dx.doi.org/10.1007/s10681-012-0784-z
Houben A, Mette M F, Teo C H, Lermontova I, Schubert I Engineered plant minichromosomes. Int. J. Dev. Biol. 57 (2013) 651-657. dx.doi.org/10.1387/ijdb.130144ah
Hübner M, Wilde P, Schmiedchen B, Dopierala P, Gowda M, Reif J C, Miedaner T Hybrid rye performance under natural drought stress in Europe. Theor. Appl. Genet. 126 (2013) 475-482. dx.doi.org/10.1007/s00122-012-1994-4
Lermontova I, Kuhlmann M, Friedel S, Rutten T, Heckmann S, Sandmann M, Demidov D, Schubert V, Schubert I Arabidopsis KINETOCHORE NULL2 is an upstream component for cenH3 deposition at centromeres. Plant Cell 25 (2013) 3389-3404. dx.doi.org/10.1105/tpc.113.114736
Lermontova I, Schubert I CENH3 for establishing and maintaining centromeres. In: Jiang J, Birchler J A (Eds.): Plant centromere biology, Vol. 1. Oxford [u.a.]: Wiley-Blackwell (2013) 67-82. dx.doi.org/10.1002/9781118525715.ch6 ISBN 978-1-119-94921-3
Li Y H, Zhao S C, Ma J X, Li D, Yan L, Li J, Qi X T, Guo X S, Zhang L, He W M, Chang R Z, Liang Q S, Guo Y, Ye C, Wang X B, Tao Y, Guan R X, Wang J Y, Liu Y L, Jin L G, Zhang X Q, Liu Z X, Zhang L J, Chen J, Wang K J, Nielsen R, Li R Q, Chen P Y, Li W B, Reif J C, Purugganan M, Wang J, Zhang M C, Wang J, Qiu L J Molecular footprints of domestication and improvement in soybean revealed by whole genome re-sequencing. BMC Genomics 14 (2013) e579. dx.doi.org/10.1186/1471-2164-14-579
Liu W, Maurer H P, Reif J C, Melchinger A E, Utz H F, Tucker M R, Ranc N, Della Porta G, Würschum T Optimum design of family structure and allocation of resources in association mapping with lines from multiple crosses. Heredity 110 (2013) 71-79. dx.doi.org/10.1038/Hdy.2012.63
Liu Y-L, Li Y-H, Reif J C, Mette M F, Liu Z-X, Liu B, Zhang S-S, Yan L, Chang R-Z, Qiu L-J Identifying QTLs underlying plant height and seed weight in soybean. Plant Genome 6 (2013) 1-11. dx.doi.org/10.3835/plantgenome2013.03.0006
Longin C F H, Sieber A-N, Reif J C Combining frost tolerance, high grain yield and good pasta quality in durum wheat. Plant Breed. 132 (2013) 353-358. dx.doi.org/10.1111/pbr.12064
Longin C F, Gowda M, Mühleisen J, Ebmeyer E, Kazman E, Schachschneider R, Schacht J, Kirchhoff M, Zhao Y, Reif J C Hybrid wheat: quantitative genetic parameters and consequences for the design of breeding programs. Theor. Appl. Genet. 126 (2013) 2791-2801. dx.doi.org/10.1007/s00122-013-2172-z
Lysak M A, Schubert I Mechanisms of chromosome rearrangements. In: Greilhuber J, Dolezel J, Wendel J F (Eds.): Plant genome diversity, Vol. 2, Physical structure, behaviour and evolution of plant genomes. Wien [u.a.]: Springer (2013) 137-147. dx.doi.org/10.1007/978-3-7091-1160-4_9 ISBN 978-3-7091-1159-8
Martin C Infrastruktur des öffentlichen Versuchswesens für pflanzenzüchterische Fragestellungen - Status quo und Perspektiven. (Master Thesis) Bernburg, Hochschule Anhalt, Fachbereich Landwirtschaft, Ökotrophologie und Landschaftsentwicklung (2013) 45 pp.
Miedaner T, Zhao Y, Gowda M, Longin C F, Korzun V, Ebmeyer E, Kazman E, Reif J C Genetic architecture of resistance to Septoria tritici blotch in European wheat. BMC Genomics 14 (2013) e858. dx.doi.org/10.1186/1471-2164-14-858
Mühleisen J, Maurer H P, Stiewe G, Bury P, Reif J C Hybrid breeding in barley. Crop Sci. 53 (2013) 819-824. dx.doi.org/10.2135/cropsci2012.07.0411
Mühleisen J, Reif J C, Maurer H P, Piepho H P Visual scorings of drought stress intensity as covariates for improved variety trial analysis. J. Agron. Crop Sci. 199 (2013) 321-330. dx.doi.org/10.1111/jac.12025
Pecinka A, Abdelsamad A, Vu G T Hidden genetic nature of epigenetic natural variation in plants. Trends Plant Sci. 18 (2013) 625-632. dx.doi.org/10.1016/j.tplants.2013.07.005
Reif J C, Zhao Y S, Würschum T, Gowda M, Hahn V Genomic prediction of sunflower hybrid performance. Plant Breed. 132 (2013) 107-114. dx.doi.org/10.1111/Pbr.12007
Sandmann M In vitro expression, purification and biochemical characterization of KNL2 protein of Arabidopsis thaliana. (Diploma Thesis) Jena, Friedrich-Schiller-Universität (2013) 87 pp.
Schubert V, Lermontova I, Schubert I The Arabidopsis CAP-D proteins are required for correct chromatin organisation, growth and fertility. Chromosoma 122 (2013) 517-533. dx.doi.org/10.1007/s00412-013-0424-y
Schwegler D D, Liu W X, Gowda M, Würschum T, Schulz B, Reif J C Multiple-line cross quantitative trait locus mapping in sugar beet (Beta vulgaris L.). Mol. Breed. 31 (2013) 279-287. dx.doi.org/10.1007/s11032-012-9788-6
Steinhoff J Quantitative trait loci (QTL) mapping in multi-line crosses of European maize. (PhD Thesis, kumulativ) Stuttgart, Landessaatzuchtanstalt der Universität Hohenheim (2013) 33 pp.
Strigens A, Schipprack W, Reif J C, Melchinger A E Unlocking the genetic diversity of maize landraces with doubled haploids opens new avenues for breeding. PLoS One 8 (2013) e57234. dx.doi.org/10.1371/journal.pone.0057234
Teo C H, Lermontova I, Houben A, Mette M F, Schubert I De novo generation of plant centromeres at tandem repeats. Chromosoma 122 (2013) 233-241. dx.doi.org/10.1007/s00412-013-0406-0
Whitford R, Fleury D, Reif J C, Garcia M, Okada T, Korzun V, Langridge P Hybrid breeding in wheat: technologies to improve hybrid wheat seed production. J. Exp. Bot. 64 (2013) 5411-5428. dx.doi.org/10.1093/jxb/ert333
Würschum T, Langer S M, Longin C F, Korzun V, Akhunov E, Ebmeyer E, Schachschneider R, Schacht J, Kazman E, Reif J C Population structure, genetic diversity and linkage disequilibrium in elite winter wheat assessed with SNP and SSR markers. Theor. Appl. Genet. 126 (2013) 1477-1486. dx.doi.org/10.1007/s00122-013-2065-1
Würschum T, Maurer H P, Dreyer F, Reif J C Effect of inter- and intragenic epistasis on the heritability of oil content in rapeseed (Brassica napus L.). Theor. Appl. Genet. 126 (2013) 435-441. dx.doi.org/10.1007/s00122-012-1991-7
Würschum T, Reif J C, Kraft T, Janssen G, Zhao Y Genomic selection in sugar beet breeding populations. BMC Genet. 14 (2013) 85. dx.doi.org/10.1186/1471-2156-14-85
Zachová D, Fojtová M, Dvořáčková M, Mozgová I, Lermontova I, Peška V, Schubert I, Fajkus J, Sýkorová E Structure-function relationships during transgenic telomerase expression in Arabidopsis. Physiol. Plant. 149 (2013) 114-126. dx.doi.org/10.1111/ppl.12021
Zhao Y S, Gowda M, Liu W X, Würschum T, Maurer H P, Longin F H, Ranc N, Piepho H P, Reif J C Choice of shrinkage parameter and prediction of genomic breeding values in elite maize breeding populations. Plant Breed. 132 (2013) 99-106. dx.doi.org/10.1111/Pbr.12008
Zhao Y, Gowda M, Würschum T, Longin C F H, Korzun V, Kollers S, Schachschneider R, Zeng J, Fernando R, Dubcovsky J, Reif J C Dissecting the genetic architecture of frost tolerance in Central European winter wheat. J. Exp. Bot. 64 (2013) 4453-4460. dx.doi.org/10.1093/jxb/ert259
Zhao Y, Zeng J, Fernando R, Reif J C Genomic prediction of hybrid wheat performance. Crop Sci. 53 (2013) 802-810. dx.doi.org/10.2135/cropsci2012.08.0463