Publications

Autoren Titel
2021
Feiner A, Pitra N, Matthews P, Pillen K, Wessjohann L A, Riewe D Downy mildew resistance is genetically mediated by prophylactic production of phenylpropanoids in hop. Plant Cell Environ. 44 (2021) 323-338. dx.doi.org/10.1111/pce.13906
2020
Butardo Jr V M, Seiler C, Sreeenivasulu N, Kuhlmann M Obtaining high-quality transcriptome data from cereal seeds by a modified method for gene expression profiling. J. Vis. Exp. 159 (2020) e60602. dx.doi.org/10.3791/60602
Feiner A E Genetic and metabolic analysis of downy mildew resistance in hops (Humulus lupulus L.). (PhD Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät III Agrar- und Ernährungswissenschaften, Geowissenschaften und Informatik (2020) 140 pp.
Henke M, Junker A, Neumann K, Altmann T, Gladilin E A two-step registration-classification approach to automated segmentation of multimodal images for high-throughput greenhouse plant phenotyping. Plant Methods 16 (2020) 95. dx.doi.org/10.1186/s13007-020-00637-x
Heuermann M Gene discovery using high-throughput phenotyping under fluctuating growth conditions and rapid identification of mutated genes. (PhD Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät I Biowissenschaften (2020) 141 pp.
Ho T T, Nguyen G T, Pham N B, Le V P, Trinh T B N, Vu T H, Phan H T, Conrad U, Chu H H Plant-derived trimeric CO-26K-equivalent epitope induced neutralizing antibodies against Porcine epidemic diarrhea virus. Front. Immunol. 11 (2020) 2152. dx.doi.org/10.3389/fimmu.2020.02152
Johansson K S L, El-Soda M, Pagel E, Meyer R C, Tõldsepp K, Nilsson A K, Brosché M, Kollist H, Uddling J, Andersson M X Genetic controls of short- and long-term stomatal CO2 responses in Arabidopsis thaliana. Ann. Bot. 126 (2020) 179-190. dx.doi.org/10.1093/aob/mcaa065
Knoch D Growth-related systems genetics analyses and hybrid performance prediction in canola. (PhD Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät I Biowissenschaften (2020) 185 pp.
Knoch D, Abbadi A, Grandke F, Meyer R C, Samans B, Werner C R, Snowdon R J, Altmann T Strong temporal dynamics of QTL action on plant growth progression revealed through high-throughput phenotyping in canola. Plant Biotechnol. J. 18 (2020) 68-82. dx.doi.org/10.1111/pbi.13171
Krieg L-M Molekulare Analyse eines QTL zur Stickstoffverwertung in Arabidopsis thaliana. (Bachelor Thesis) Bernburg, Hochschule Anhalt, Fachbereich Landwirtschaft, Ökotrophologie und Landschaftsentwicklung (2020) 65 pp.
Kuhlmann M, Meyer R C, Jia Z, Klose D, Krieg L-M, von Wirén N, Altmann T Epigenetic variation at a genomic locus affecting biomass accumulation under low nitrogen in Arabidopsis thaliana. Agronomy 10 (2020) 636. doi.org/10.3390/agronomy10050636
Melandri G, AbdElgawad H, Riewe D, Hageman J A, Asard H, Beemster G T S, Kadam N, Jagadish K, Altmann T, Ruyter-Spira C, Bouwmeester H Biomarkers for grain yield stability in rice under drought stress. J. Exp. Bot. 71 (2020) 669–683. dx.doi.org/10.1093/jxb/erz221
Meyer R C, Weigelt-Fischer K, Knoch D, Heuermann M, Zhao Y, Altmann T Temporal dynamics of QTL effects on vegetative growth in Arabidopsis thaliana. J. Exp. Bot. (2020) accepted. dx.doi.org/10.1093/jxb/eraa490
Mikołajczak K, Ogrodowicz P, Ćwiek-Kupczyńska H, Weigelt-Fischer K, Mothukuri S R, Junker A, Altmann T, Krystkowiak K, Adamski T, Surma M, Kuczyńska A, Krajewski P Image phenotyping of spring barley (Hordeum vulgare L.) RIL population under drought: selection of traits and biological interpretation. Front. Plant Sci. 11 (2020) 743. dx.doi.org/10.3389/fpls.2020.00743
Phan H T, Pham V T, Ho T T, Pham N B, Chu H H, Vu T H, Abdelwhab E M, Scheibner D, Mettenleiter T C, Hanh T X, Meister A, Gresch U, Conrad U Immunization with plant-derived multimeric H5 hemagglutinins protect chicken against highly pathogenic avian influenza virus H5N1. Vaccines 8 (2020) 593. dx.doi.org/10.3390/vaccines8040593
Poursarebani N, Trautewig C, Melzer M, Nussbaumer T, Lundqvist U, Rutten T, Schmutzer T, Brandt R, Himmelbach A, Altschmied L, Koppolu R, Youssef H M, Sibout R, Dalmais M, Bendahmane A, Stein N, Xin Z, Schnurbusch T COMPOSITUM 1 contributes to the architectural simplification of barley inflorescence via meristem identity signals. Nat. Commun. 11 (2020) 5138. dx.doi.org/10.1038/s41467-020-18890-y
Rizzo P, Altschmied L, Ravindran B M, Rutten T, D'Auria J C The biochemical and genetic basis for the biosynthesis of bioactive compounds in Hypericum perforatum L., one of the largest medicinal crops in Europe. Genes 11 (2020) E1210. dx.doi.org/10.3390/genes11101210
Wiebach J, Nagel M, Börner A, Altmann T, Riewe D Age-dependent loss of seed viability is associated with increased lipid oxidation and hydrolysis. Plant Cell Environ. 43 (2020) 303-314. dx.doi.org/10.1111/pce.13651
Woźniak N J, Kappel C, Marona C, Altschmied L, Neuffer B, Sicard A A similar genetic architecture underlies the convergent evolution of the selfing syndrome in Capsella. Plant Cell 32 (2020) 935-949. dx.doi.org/10.1105/tpc.19.00551
2019
Anacleto R, Badoni S, Parween S, Butardo V M, Jr., Misra G, Cuevas R P, Kuhlmann M, Trinidad T P, Mallillin A C, Acuin C, Bird A R, Morell M K, Sreenivasulu N Integrating a genome-wide association study with a large-scale transcriptome analysis to predict genetic regions influencing the glycaemic index and texture in rice. Plant Biotechnol. J. 17 (2019) 1261-1275. dx.doi.org/10.1111/pbi.13051
Demidov D, Heckmann S, Weiss O, Rutten T, Tomaštíková E D, Kuhlmann M, Scholl P, Municio C M, Lermontova I, Houben A Deregulated phosphorylation of CENH3 at Ser65 affects the development of floral meristems in Arabidopsis thaliana. Front. Plant Sci. 10 (2019) 928. dx.doi.org/10.3389/Fpls.2019.00928
Dodig D, Bozinovic S, Nikolic A, Zoric M, Vancetovic J, Ignjatovic-Micic D, Delic N, Weigelt-Fischer K, Junker A, Altmann T Image-derived traits related to mid-season growth performance of maize under nitrogen and water stress. Front. Plant Sci. 10 (2019) 814. dx.doi.org/10.3389/Fpls.2019.00814
Ferguson J N, Meyer R C, Edwards K D, Humphry M, Brendel O, Bechtold U Accelerated flowering time reduces lifetime water use without penalizing reproductive performance in Arabidopsis. Plant Cell Environ. 42 (2019) 1847-1867. dx.doi.org/10.1111/pce.13527
Henke M, Junker A, Neumann K, Altmann T, Gladilin E Comparison and extension of three methods for automated registration of multimodal plant images. Plant Methods 15 (2019) 44. dx.doi.org/10.1186/s13007-019-0426-8
Henke M, Junker A, Neumann K, Altmann T, Gladilin E Comparison of feature point detectors for multimodal image registration in plant phenotyping. PLoS One 14 (2019) e0221203. dx.doi.org/10.1371/journal.pone.0221203
Heuermann M C, Rosso M G, Mascher M, Brandt R, Tschiersch H, Altschmied L, Altmann T Combining next-generation sequencing and progeny testing for rapid identification of induced recessive and dominant mutations in maize M2 individuals. Plant J. 100 (2019) 851-862. dx.doi.org/10.1111/tpj.14431
Jia Z, Giehl R F H, Meyer R C, Altmann T, von Wirén N Natural variation of BSK3 tunes brassinosteroid signaling to regulate root foraging under low nitrogen. Nat. Commun. 10 (2019) 2378. dx.doi.org/10.1038/s41467-019-10331-9
Kuhlmann M DNA-Methylierung – das 5. Element. Biol. Unserer Zeit 49 (2019) 342-349. dx.doi.org/10.1002/biuz.201910686
Lück S, Kreszies T, Strickert M, Schweizer P, Kuhlmann M, Douchkov D siRNA-Finder (si-Fi) software for RNAi-target design and off-target prediction. Front. Plant Sci. 10 (2019) 1023. dx.doi.org/10.3389/fpls.2019.01023
Meyer R C, Gryczka C, Neitsch C, Müller M, Bräutigam A, Schlereth A, Schön H, Weigelt-Fischer K, Altmann T Genetic diversity for nitrogen use efficiency in Arabidopsis thaliana. Planta 250 (2019) 41–57. dx.doi.org/10.1007/s00425-019-03140-3
Narisetti N, Henke M, Seiler C, Shi R, Junker A, Altmann T, Gladilin E Semi-automated Root Image Analysis (saRIA). Sci. Rep. 9 (2019) 19674. dx.doi.org/10.1038/s41598-019-55876-3
Püffeld M, Seiler C, Kuhlmann M, Sreenivasulu N, Butardo V M Analysis of developing rice grain transcriptome using the agilent microarray platform. In: Sreenivasulu N (Ed.): Rice grain quality: methods and protocols. (Series: Methods in molecular biology, Vol. 1892) New York, NY: Humana Press (2019) 277-300. doi.org/10.1007/978-1-4939-8914-0_16 ISBN 978-1-4939-8912-6
Rizzo P, Altschmied L, Stark P, Rutten T, Guendel A, Scharfenberg S, Franke K, Baeumlein H, Wessjohann L, Koch M, Borisjuk L, Sharbel T F Discovery of key regulators of dark glands development and hypericin biosynthesis in St. John's wort (Hypericum perforatum). Plant Biotechnol. J. 17 (2019) 2299-2312. dx.doi.org/10.1111/pbi.13141
Seiler C, Kuhlmann M Quantification of DNA methylation as biomarker for grain quality. In: Sreenivasulu N (Ed.): Rice grain quality: methods and protocols. (Series: Methods in molecular biology, Vol. 1892) New York, NY: Humana Press (2019) 301-310. doi.org/10.1007/978-1-4939-8914-0_17 ISBN 978-1-4939-8912-6
Surdonja K Influence of post-anthesis drought stress on germination and malting quality in barley. (PhD Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät I, Biowissenschaften (2019) 104 pp.
Tedeschi F, Rizzo P, Huong B, Czihal A, Rutten T, Altschmied L, Scharfenberg S, Grosse I, Becker C, Weigel D, Bäumlein H, Kuhlmann M EFFECTOR OF TRANSCRIPTION factors are novel plant-specific regulators associated with genomic DNA methylation in Arabidopsis. New Phytol. 221 (2019) 261-278. dx.doi.org/10.1111/nph.15439
Zhang Y, Ramming A, Heinke L, Altschmied L, Slotkin R K, Becker J D, Kappel C, Lenhard M The poly(A) polymerase PAPS1 interacts with the RNA-directed DNA methylation pathway in sporophyte and pollen development. Plant J. 99 (2019) 655-672. dx.doi.org/10.1111/tpj.14348
2018
Altmann S, Muino J M, Lortzing V, Brandt R, Himmelbach A, Altschmied L, Hilker M Transcriptomic basis for reinforcement of elm antiherbivore defence mediated by insect egg deposition. Mol. Ecol. 27 (2018) 4901-4915. dx.doi.org/10.1111/mec.14900
Casartelli A, Riewe D, Hubberten H M, Altmann T, Hoefgen R, Heuer S Exploring traditional aus-type rice for metabolites conferring drought tolerance. Rice 11 (2018) 9. doi.org/10.1186/s12284-017-0189-7
Chen D, Shi R, Pape J-M, Neumann K, Arend D, Graner A, Chen M, Klukas C Predicting plant biomass accumulation from image-derived parameters. GigaScience 7 (2018) 1-13. dx.doi.org/10.1093/gigascience/giy001
Döll S, Kuhlmann M, Rutten T, Mette M F, Scharfenberg S, Petridis A, Berreth D C, Mock H-P Accumulation of the coumarin scopolin under abiotic stress conditions is mediated by the Arabidopsis thaliana THO/TREX complex. Plant J. 93 (2018) 431-444. dx.doi.org/10.1111/tpj.13797
Grehl C, Kuhlmann M, Becker C, Glaser B, Grosse I How to design a whole-genome bisulfite sequencing experiment. Epigenomes 2 (2018) 21. dx.doi.org/10.3390/epigenomes2040021
Hashemipetroudi S H, Nematzadeh G, Ahmadian G, Yamchi A, Kuhlmann M Assessment of DNA contamination in RNA samples based on ribosomal DNA. J. Vis. Exp. 131 (2018) e55451. dx.doi.org/10.3791/55451
Henke M, Junker A, Neumann K, Altmann T, Gladilin E Automated alignment of multi-modal plant images using integrative phase correlation approach. Front. Plant Sci. 9 (2018) 1519. dx.doi.org/10.3389/fpls.2018.01519
Johnson J M, Thürich J, Petutschnig E K, Altschmied L, Meichsner D, Sherameti I, Dindas J, Mrozinska A, Paetz C, Scholz S S, Furch A C U, Lipka V, Hedrich R, Schneider B, Svatoš A, Oelmüller R A poly(A) ribonuclease controls the cellotriose-based interaction between Piriformospora indica and its host Arabidopsis. Plant Physiol. 176 (2018) 2496-2514. dx.doi.org/10.1104/pp.17.01423
Klose D Untersuchung der Stickstoffverwertung unterschiedlicher Arabidopsis-Akzessionen. (Bachelor Thesis) Mittweida, Hochschule Mittweida, University of Applied Sciences, Fakultät: Angewandte Computer- und Biowissenschaften (2018) 109 pp.
Kochevenko A, Jiang Y, Seiler C, Surdonja K, Kollers S, Reif J C, Korzun V, Graner A Identification of QTL hot spots for malting quality in two elite breeding lines with distinct tolerance to abiotic stress. BMC Plant Biol. 18 (2018) 106. dx.doi.org/10.1186/s12870-018-1323-4
Meitzel T Signaling pathways in legume seed development: evidence for a crosstalk between trehalose 6-phosphate and auxin. (PhD Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät I Biowissenschaften (2018) 177 pp.
Pommerrenig B, Junker A, Abreu I, Bieber A, Fuge J, Willner E, Bienert M D, Altmann T, Bienert G P Identification of rapeseed (Brassica napus) cultivars with a high tolerance to boron-deficient conditions. Front. Plant Sci. 9 (2018) 1142. dx.doi.org/10.3389/fpls.2018.01142
Radchuk V, Tran V, Radchuk R, Diaz-Mendoza M, Weier D, Fuchs J, Riewe D, Hensel G, Kumlehn J, Munz E, Heinzel N, Rolletschek H, Martinez M, Borisjuk L Vacuolar processing enzyme 4 contributes to maternal control of grain size in barley by executing programmed cell death in the pericarp. New Phytol. 218 (2018) 1127-1142. dx.doi.org/10.1111/nph.14729
Shi R, Junker A, Seiler C, Altmann T Phenotyping roots in darkness: disturbance-free root imaging with near infrared illumination. Funct. Plant Biol. 45 (2018) 400-411. doi.org/10.1071/FP17262
Shi R, Melzer M, Zheng S, Benke A, Stich B, von Wirén N Iron retention in root hemicelluloses causes genotypic variability in the tolerance to iron deficiency-induced chlorosis in maize. Front. Plant Sci. 9 (2018) 557. dx.doi.org/10.3389/fpls.2018.00557
Wang H, Chen W, Eggert K, Charnikhova T, Bouwmeester H, Schweizer P, Hajirezaei M R, Seiler C, Sreenivasulu N, von Wirén N, Kuhlmann M Abscisic acid influences tillering by modulation of strigolactones in barley. J. Exp. Bot. 69 (2018) 3883-3898. dx.doi.org/10.1093/jxb/ery200
2017
Blossei J Untersuchung zum Einfluss der Überexpression von ERI auf die Zunahme der frühen Biomasse. (Bachelor Thesis) Bremen, Hochschule Bremen, Internationaler Studiengang Technische und Angewandte Biologie, Fakultät 5 (2017) 42 pp.
Chen D Dissecting and modeling the phenotypic components of plant growth and drought responses based on high-throughput image analysis. (PhD Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät I Biowissenschaften (2017) 185 pp.
de Guzman M K, Parween S, Butardo V M, Alhambra C M, Anacleto R, Seiler C, Bird A R, Chow C P, Sreenivasulu N Investigating glycemic potential of rice by unraveling compositional variations in mature grain and starch mobilization patterns during seed germination. Sci. Rep. 7 (2017) 5854. dx.doi.org/10.1038/s41598-017-06026-0
Galla G, Zenoni S, Avesani L, Altschmied L, Rizzo P, Sharbel T F, Barcaccia G Pistil transcriptome analysis to disclose genes and gene products related to Aposporous apomixis in Hypericum perforatum L. Front. Plant Sci. 8 (2017) 79. dx.doi.org/10.3389/fpls.2017.00079
Kloth K J, Busscher J, Wiegers G, Kruijer W, Buijs G, Meyer R C, Albrectsen B R, Bouwmeester H J, Dicke M, Jongsma M A SIEVE ELEMENT-LINING CHAPERONE 1 restricts aphid feeding on Arabidopsis during heat stress. Plant Cell 29 (2017) 2450-2464. dx.doi.org/10.1105/tpc.16.00424
Knoch D, Riewe D, Meyer R C, Boudichevskaia A, Schmidt R, Altmann T Genetic dissection of metabolite variation in Arabidopsis seeds: evidence for mQTL hotspots and a master regulatory locus of seed metabolism. J. Exp. Bot. 68 (2017) 1655-1667. doi.org/10.1093/jxb/erx049
Ma W, Gabriel T S, Martis M M, Gursinsky T, Schubert V, Vrana J, Dolezel J, Grundlach H, Altschmied L, Scholz U, Himmelbach A, Behrens S E, Banaei-Moghaddam A M, Houben A Rye B chromosomes encode a functional Argonaute-like protein with in vitro slicer activities similar to its A chromosome paralog. New Phytol. 213 (2017) 916-928. dx.doi.org/10.1111/nph.14110
Muraya M M, Chu J, Zhao Y, Junker A, Klukas C, Reif J C, Altmann T Genetic variation of growth dynamics in maize (Zea mays L.) revealed through automated non-invasive phenotyping. Plant J. 89 (2017) 366–380. dx.doi.org/10.1111/tpj.13390
Patzold F Identifikation von QTL für Zwergrostresistenz (Puccinia hordei) in ausgewählten Familien der Gerste (Hordeum vulgare ssp. vulgare) Nested Association Mapping Population NAM HEB-25. (Master Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg (2017) 74 pp.
Radchuk V, Riewe D, Peukert M, Matros A, Strickert M, Radchuk R, Weier D, Steinbiß H-H, Sreenivasulu N, Weschke W, Weber H Down-regulated sucrose transporters HvSUT1, HvSUT2 affects sucrose homeostasis along its delivery path in barley grains. J. Exp. Bot. 68 (2017) 4595-4612. doi.org/10.1093/jxb/erx266
Riewe D, Wiebach J, Altmann T Structure annotation and quantification of wheat seed oxidized lipids by high resolution LC-MS/MS. Plant Physiol. 175 (2017) 600-618. dx.doi.org/10.1104/pp.17.00470
Sandmann M, Talbert P, Demidov D, Kuhlmann M, Rutten T, Conrad U, Lermontova I Targeting of A. thaliana KNL2 to centromeres depends on the conserved CENPC-k motif in its C-terminus. Plant Cell 29 (2017) 144-155. dx.doi.org/10.1105/tpc.16.00720
Schmidt R, Boudichevskaia A, Cao H X, He S, Meyer R C, Reif J C Extracting genotype information of Arabidopsis thaliana recombinant inbred lines from transcript profiles established with high-density oligonucleotide arrays. Plant Cell Rep. 36 (2017) 1871-1881. dx.doi.org/10.1007/s00299-017-2200-6
Surdonja K, Eggert K, Hajirezaei M-R, Harshavardhan V, Seiler C, von Wirén N, Sreenivasulu N, Kuhlmann M Increase of DNA methylation at the HvCKX2.1 promoter by terminal drought stress in barley. Epigenomes 1 (2017) 9. dx.doi.org/10.3390/epigenomes1020009
Tedeschi F, Rizzo P, Rutten T, Altschmied L, Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol. 213 (2017) 1909–1924. dx.doi.org/10.1111/nph.14293
Thirulogachandar V, Alqudah A M, Koppolu R, Rutten T, Graner A, Hensel G, Kumlehn J, Bräutigam A, Sreenivasulu N, Schnurbusch T, Kuhlmann M Leaf primordium size specifies leaf width and vein number among row-type classes in barley. Plant J. 91 (2017) 601-612. dx.doi.org/10.1111/tpj.13590
Tikhenko N, Rutten T, Senula A, Rubtsova M, Keller E R J, Börner A The changes in the reproductive barrier between hexaploid wheat (Triticum aestivum L.) and rye (Secale cereale L.): different states lead to different fates. Planta 246 (2017) 377–388. dx.doi.org/10.1007/s00425-017-2694-8
Tschiersch H, Junker A, Meyer R C, Altmann T Establishment of integrated protocols for automated high throughput kinetic chlorophyll fluorescence analyses. Plant Methods 13 (2017) 54. dx.doi.org/10.1186/s13007-017-0204-4
Venkatasubbu T Dosage of duplicated and antifunctionalized homeobox proteins influences leaf and spikelet development in barley (Hordeum vulgare L.). (PhD Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät I - Biowissenschaften (2017) 165 pp.
Walch-Liu P, Meyer R C, Altmann T, Forde B G QTL analysis of the developmental response to L-glutamate in Arabidopsis roots and its genotype-by-environment interactions. J. Exp. Bot. 68 (2017) 2919-2931. dx.doi.org/10.1093/jxb/erx132
Wang H Genetic manipulation of the cross-talk between abscisic acid and strigolactones and their biosynthetic link during late tittelring in barley. (PhD Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät I Biowissenschaften (2017) 114 pp.