publications before 2016

Steffens A, Bräutigam A, Jakoby M, Hülskamp A (2015)The BEACH Domain Protein SPIRRIG Is Essential for Arabidopsis Salt stress Tolerance and Functions as a Regulator of Transcript Stabilization and Localization. PLoS Biology 13 (7), e1002188
Mallmann J, Heckmann D, Bräutigam A, Lercher MJ, Weber APM, Westhoff P, Gowik U (2014)The role of photorespiration during the evolution of C4 photosynthesis in the genus Flaveria. eLife, 2014/6, e02478-e02478
Kühlahoglu C, Bräutigam A.“Quantitative Transcriptome Analysis Using RNA-seq “ in “Plant Circadian Networks: Methods and Protocols, Methods in Molecular Biology, vol. 1158, Springer Science and Business Media New York (2014)
Külahoglu C*, Denton AK*, Sommer M, Mass J, Schliesky S, Wrobel TJ, Berckmans B, Gongora-Castillo E, Buell CR, Simon R, De Veylder L, Bräutigam A*, Weber APM (2014)Comparative transcriptome atlases reveal altered gene expression modules between two Cleomaceae C3 and C4 plant species. Plant Cell 26: 3243-3260
Brouwer P, Bräutigam A, Külahoglu C, Tazelaar AOE, Kurz S, Nierop KGJ, van der Werf A, Weber APM, Schluepmann H (2014)Azolla domestication towards a biobased economy? New Phytologist 202 (3), 1069-1082
Bräutigam  A*, Schliesky S*, Külahoglu C, Osborne CP, Weber APM (2014)Towards an integrative model of C4 photosynthetic subtypes – insights from comparative transcriptome analysis of NAD-ME, NADP-ME, and PEP-CK C4 species Journal of Experimental Botany 65 (13): 3579-3593
Wang Y*, Bräutigam A*, Weber APM, Zhu X (2014)Three distinct biochemical subtypes of C4 photosynthesis? - A modelling approach Journal of Experimental Botany 65 (13): 3567-3578
Christin P-A, Arakaki M, Osborne CP, Bräutigam A, SageRF, Hibberd JM, Kelly S, Covshoff S, Wong GKS, Edwards EJ (2014)Shared origins of a key enzyme during the evolution of C4 and CAM metabolism. Journal of Experimental Botany 65 (13): 3609-3621
Lundquist PK, Rosar C, Bräutigam A, Weber APM (2014)Plastid Signals and the Bundle Sheath: Mesophyll Development in Reticulate Mutants. Molecular Plant 7: 14-29
Cheng SF, van den Bergh E, Zeng P, Zhong X, Xu JJ, Liu X, Hofberger J, de Bruijn S, Bhide AS, Kuelahoglu C, Bian C, Chen J, Fan GY, Kaufmann K, Hall JC, Becker A, Bräutigam A, Weber APM, Shi CC, Zheng ZJ, Li WJ, Lv MJ, Tao YM, Wang JY, Zou HF, Quan ZW, Hibberd JM, Zhang GY, Zhu XG, Xu X, Schranz ME (2013) The Tarenaya hassleriana Genome Provides Insight into Reproductive Trait and Genome Evolution of Crucifers. Plant Cell 25: 2813-2830
Lota F, Wegmuller S, Buer B, Sato S, Bräutigam A, Hanf B, Bucher M (2013)
The cis-acting CTTC-P1BS module is indicative for gene function of LjVTI12, a Qb-SNARE protein gene that is required for arbuscule formation in Lotus japonicus. Plant Journal 74: 280-293
Lundquist PK, Rosar C, Bräutigam A, Weber APM (2014)Plastid Signals and the Bundle Sheath: Mesophyll Development in Reticulate Mutants. Molecular Plant 7: 14-29
Manandhar-Shrestha K, Tamot B, Pratt EPS, Saitie S, Bräutigam A, Weber APM, Hoffmann-Benning S (2013)Comparative proteomics of chloroplasts envelopes from bundle sheath and mesophyll chloroplasts reveals novel membrane proteins with a possible role in C4-related metabolite fluxes and development. Frontiers in Plant Science 4
Pick TR*, Bräutigam A*, Schulz MA, Obata T, Fernie AR, Weber APM (2013)PLGG1, a plastidic glycolate glycerate transporter, is required for photorespiration and defines a unique class of metabolite transporters. Proceedings of the National Academy of Sciences of the United States of America 110: 3185-3190
Schlüter U, Colmsee C, Scholz U, Bräutigam A, Weber APM, Zellerhoff N, Bucher M, Fahnenstich H, Sonnewald U (2013)Adaptation of maize source leaf metabolism to stress related disturbances in carbon, nitrogen and phosphorus balance. BMC Genomics 14
Schönknecht G, Chen WH, Ternes CM, Barbier GG, Shrestha RP, Stanke M, Bräutigam A, Baker BJ, Banfield JF, Garavito RM, Carr K, Wilkerson C, Rensing SA, Gagneul D, Dickenson NE, Oesterhelt C, Lercher MJ, Weber APM (2013)Gene Transfer from Bacteria and Archaea Facilitated Evolution of an Extremophilic Eukaryote. Science 339: 1207-1210
Weber APM, Bräutigam A (2013)The role of membrane transport in metabolic engineering of plant primary metabolism. Current opinion in biotechnology 24 (2), 256-262
Colmsee C, Mascher M, Czauderna T, Hartmann A, Schlüter U, Zellerhoff N, Schmitz J, Bräutigam A, Pick TR, Alter P, Gahrtz M, Witt S, Fernie AR, Börnke F, Fahnenstich H, Bucher M, Dresselhaus T, Weber APM, Schreiber F, Scholz U, Sonnewald U (2012)OPTIMAS-DW: A Comprehensive Transcriptomics, Metabolomics, Ionomics, Proteomics and Phenomics Data Resource for Maize. BMC Plant Biol 12: 245.
Hamisch D, Randewig D, Schliesky S, Bräutigam A, Weber APM, Geffers R, Herschbach C, Rennenberg H, Mendel RR, Hansch R (2012)Impact of SO2 on Arabidopsis thaliana transcriptome in wildtype and sulfite oxidase knockout plants analyzed by RNA deep sequencing. New Phytologist 196: 1074-1085
Rosar C, Kanonenberg K, Nanda AM, Mielewczik M, Bräutigam A, Novak O, Strnad M, Walter A, Weber APM (2012)The Leaf Reticulate Mutant dov1 Is Impaired in the First Step of Purine Metabolism. Molecular Plant 5: 1227-1241
Schlüter U, Mascher M, Colmsee C, Scholz U, Bräutigam A, Fahnenstich H, Sonnewald U (2012)Maize Source Leaf Adaptation to Nitrogen Deficiency Affects Not Only Nitrogen and Carbon Metabolism But Also Control of Phosphate Homeostasis. Plant Physiology 160: 1384-1406
Schulze WX, Sanggaard KW, Kreuzer I, Knudsen AD, Bemm F, Thogersen IB, Bräutigam A, Thomsen LR, Schliesky S, Dyrlund TF, Escalante-Perez M, Becker D, Schultz J, Karring H, Weber A, Hojrup P, Hedrich R, Enghild JJ (2012)The Protein Composition of the Digestive Fluid from the Venus Flytrap Sheds Light on Prey Digestion Mechanisms. Molecular & Cellular Proteomics 11: 1306-1319
Breuers FKH*, Bräutigam A*, Geimer S*, Welzel UY, Stefano G, Renna L, Brandizzi F,  Weber APM (2012)Dynamic remodeling of the plastid envelope membranes – a tool for chloroplast envelope in vivo localizations, Frontiers Plant Sci 3: 7.
Sommer M, Bräutigam A, Weber APM (2012)The dicotyledonous NAD malic enzyme C4 plant Cleome gynandra displays age-dependent plasticity of C4 decarboxylation biochemistry. Plant Biology 14: 621-629
Schliesky S, Gowik U, Weber APM, Bräutigam A (2012)RNA-seq assembly - Are we there yet? Frontiers Plant Sci 3: 220.
Bräutigam A, Facchinelli F, Weber APM (2012)Metabolic integration of the chloroplast during endosymbiosis - molecular characterization of envelope transport proteins. Endocytobiosis Cell Res 23: 96-102.
Facchinelli F, Bräutigam A, Weber APM (2012)Metabolic integration of the chloroplast during endosymbiosis. Endocytobiosis Cell Res 23: 52-55.
Bräutigam A*, Kajala K*, Wullenweber J, Sommer M, Gagneul D, Weber KL, Carr KM, Gowik U, Mass J, Lercher MJ, Westhoff P, Hibberd JM, Weber APM (2011)An mRNA Blueprint for C-4 Photosynthesis Derived from Comparative Transcriptomics of Closely Related C-3 and C-4 Species. Plant Physiology 155: 142-156
Bräutigam A, Mullick T, Schliesky S, Weber APM (2011)Critical assessment of assembly strategies for non-model species mRNA-Seq data and application of next-generation sequencing to the comparison of C-3 and C-4 species. Journal of Experimental Botany 62: 3093-3102
Franssen SU, Shrestha RP, Bräutigam A, Bornberg-Bauer E, Weber APM (2011)Comprehensive transcriptome analysis of the highly complex Pisum sativum genome using next generation sequencing. BMC Genomics 12
Furumoto T, Yamaguchi T, Ohshima-Ichie Y, Nakamura M, Tsuchida-Iwata Y, Shimamura M, Ohnishi J, Hata S, Gowik U, Westhoff P, Bräutigam A, Weber APM, Izui K (2011)A plastidial sodium-dependent pyruvate transporter. Nature 476: 472-U131
Gowik U, Bräutigam A, Weber KL, Weber APM, Westhoff P (2011)Evolution of C-4 Photosynthesis in the Genus Flaveria: How Many and Which Genes Does It Take to Make C-4? Plant Cell 23: 2087-2105
Pick TR*, Bräutigam A*, Schluter U, Denton AK, Colmsee C, Scholz U, Fahnenstich H, Pieruschka R, Rascher U, Sonnewald U, Weber APM (2011)Systems Analysis of a Maize Leaf Developmental Gradient Redefines the Current C-4 Model and Provides Candidates for Regulation. Plant Cell 23: 4208-4220
Bräutigam A, Weber APM (2011)Do Metabolite Transport Processes Limit Photosynthesis? Plant Physiology 155: 43-48
Breuers FKH, Bräutigam A, Weber APM (2011)The plastid outer envelope - a highly dynamic interface between plastid and cytoplasm.Front Plant Sci 2: 97
Bräutigam A, Weber APM“Transport processes – connecting the reactions of C4 photosynthesis” in Advances in Photosynthesis and Respiration (2011)
2010 and earlier
Bräutigam A, Gowik U (2010)What can next generation sequencing do for you? Next generation sequencing as a valuable tool in plant research. Plant Biology 12: 831-841
Bräutigam A, Weber APM (2009)Proteomic Analysis of the Proplastid Envelope Membrane Provides Novel Insights into Small Molecule and Protein Transport across Proplastid Membranes. Molecular Plant 2: 1247-1261
Bräutigam A, Hofmann-Benning S, Weber APM (2008)Comparative proteomics of chloroplast envelopes from C(3) and C(4) plants reveals specific adaptations of the plastid envelope to C(4) photosynthesis and candidate proteins required for maintaining C(4) metabolite fluxes. Plant Physiology 148: 568-579
Bräutigam A, Shrestha RP, Whitten D, Wilkerson CG, Carr KM, Froehlich JE, Weber APM (2008)Low-coverage massively parallel pyrosequencing of cDNAs enables proteomics in non-model species: Comparison of a species-specific database generated by pyrosequencing with databases from related species for proteome analysis of pea chloroplast envelopes. Journal of Biotechnology 136: 44-53
Bräutigam A*, Gagneul D*, Weber APM (2007)High-throughput colorimetric method for the parallel assay of glyoxylic acid and ammonium in a single extract. Analytical Biochemistry 362: 151-153
Weber APM, Oesterhelt C, Gross W, Bräutigam A, Imboden LA, Krassovskaya I, Linka N, Truchina J, Schneidereit J, Voll H, Voll LM, Zimmermann M, Jamai A, Riekhof WR, Yu B, Garavito RM, Benning C (2004)EST-analysis of the thermo-acidophilic red microalga Galdieria sulphuraria reveals potential for lipid A biosynthesis and unveils the pathway of carbon export from rhodoplasts. Plant Molecular Biology 55: 17-32