Autoren Titel
2017
Avni R, Nave M, Barad O, Baruch K, Twardziok S O, Gundlach H, Hale I, Mascher M, Spannagl M, Wiebe K, Jordan K W, Golan G, Deek J, Ben-Zvi B, Ben-Zvi G, Himmelbach A, MacLachlan R P, Sharpe A G, Fritz A, Ben-David R, Budak H, Fahima T, Korol A, Faris J D, Hernandez A, Mikel M A, Levy A A, Steffenson B, Maccaferri M, Tuberosa R, Cattivelli L, Faccioli P, Ceriotti A, Kashkush K, Pourkheirandish M, Komatsuda T, Eilam T, Sela H, Sharon A, Ohad N, Chamovitz D A, Mayer K F X, Stein N, Ronen G, Peleg Z, Pozniak C J, Akhunov E D, Distelfeld A Wild emmer genome architecture and diversity elucidate wheat evolution and domestication. Science 357 (2017) 93-97. dx.doi.org/10.1126/science.aan0032
Beier S, Himmelbach A, Colmsee C, Zhang X-Q, Barrero R A, Zhang Q, Li L, Bayer M, Bolser D, Taudien S, Groth M, Felder M, Hastie A, Šimková H, Staňková H, Vrána J, Chan S, Muñoz-Amatriaín M, Ounit R, Wanamaker S, Schmutzer T, Aliyeva-Schnorr L, Grasso S, Tanskanen J, Sampath D, Heavens D, Cao S, Chapman B, Dai F, Han Y, Li H, Li X, Lin C, McCooke J K, Tan C, Wang S, Yin S, Zhou G, Poland J A, Bellgard M I, Houben A, Doležel J, Ayling S, Lonardi S, Langridge P, Muehlbauer G J, Kersey P, Clark M D, Caccamo M, Schulman A H, Platzer M, Close T J, Hansson M, Zhang G, Braumann I, Li C, Waugh R, Scholz U, Stein N, Mascher M Construction of a map-based reference genome sequence for barley, Hordeum vulgare L. Sci. Data 4 (2017) 170044. dx.doi.org/10.1038/sdata.2017.44
Braatz J, Harloff H-J, Mascher M, Stein N, Himmelbach A, Jung C CRISPR-Cas9 targeted mutagenesis leads to simultaneous modification of different homoeologous gene copies in polyploid oilseed rape (Brassica napus). Plant Physiol. 174 (2017) 935-942. dx.doi.org/10.1104/pp.17.00426
Dreissig S, Fuchs J, Himmelbach A, Mascher M, Houben A Sequencing of single pollen nuclei reveals meiotic recombination events at megabase resolution and circumvents segregation distortion caused by postmeiotic processes. Front. Plant Sci. 8 (2017) 1620. dx.doi.org/10.3389/fpls.2017.01620
Jost M Cloning of the plant development regulatory genes MANY NODED DWARF (MND) and LAXATUM-A (LAX-A) by taking advantage of on improved barley genomics infrastructure. 18. Kurt von Rümker-Vorträge. Vortr. Pflanzenzücht. 86 (2017) 51-58.
Ma W, Gabriel T S, Martis M M, Gursinsky T, Schubert V, Vrana J, Dolezel J, Grundlach H, Altschmied L, Scholz U, Himmelbach A, Behrens S E, Banaei-Moghaddam A M, Houben A Rye B chromosomes encode a functional Argonaute-like protein with in vitro slicer activities similar to its A chromosome paralog. New Phytol. 213 (2017) 916-928. dx.doi.org/10.1111/nph.14110
Mascher M, Gundlach H, Himmelbach A, Beier S, Twardziok S O, Wicker T, Radchuk V, Dockter C, Hedley P E, Russell J, Bayer M, Ramsay L, Liu H, Haberer G, Zhang X-Q, Zhang Q, Barrero R A, Li L, Taudien S, Groth M, Felder M, Hastie A, Šimková H, Staňková H, Vrána J, Chan S, Muñoz-Amatriaín M, Ounit R, Wanamaker S, Bolser D, Colmsee C, Schmutzer T, Aliyeva-Schnorr L, Grasso S, Tanskanen J, Chailyan A, Sampath D, Heavens D, Clissold L, Cao S, Chapman B, Dai F, Han Y, Li H, Li X, Lin C, McCooke J K, Tan C, Wang P, Wang S, Yin S, Zhou G, Poland J A, Bellgard M I, Borisjuk L, Houben A, Doležel J, Ayling S, Lonardi S, Kersey P, Langridge P, Muehlbauer G J, Clark M D, Caccamo M, Schulman A H, Mayer K F X, Platzer M, Close T J, Scholz U, Hansson M, Zhang G, Braumann I, Spannagl M, Li C, Waugh R, Stein N A chromosome conformation capture ordered sequence of the barley genome. Nature 544 (2017) 427-433. dx.doi.org/10.1038/nature22043
Stoll A, Harpke D, Schütte C, Stefanczyk N, Brandt R, Blattner F R, Quandt D Development of microsatellite markers and assembly of the plastid genome in Cistanthe longiscapa (Montiaceae) based on low-coverage whole genome sequencing. PLoS One 12 (2017) e0178402. dx.doi.org/10.1371/journal.pone.0178402
Wendler N, Mascher M, Himmelbach A, Bini F, Kumlehn J, Stein N A high-density, sequence-enriched genetic map of Hordeum bulbosum and its collinearity to H. vulgare. Plant Genome 10 (2017) dx.doi.org/10.3835/plantgenome2017.06.0049
Wicker T, Schulman A H, Tanskanen J, Spannagl M, Twardziok S, Mascher M, Springer N M, Li Q, Waugh R, Li C, Zhang G, Stein N, Mayer K F X, Gundlach H The repetitive landscape of the 5100 Mbp barley genome. Mobile DNA 8 (2017) 22. dx.doi.org/10.1186/s13100-017-0102-3
Yang P, Habekuß A, Hofinger B J, Kanyuka K, Kilian B, Graner A, Ordon F, Stein N Sequence diversification in recessive alleles of two host factor genes suggests adaptive selection for bymovirus resistance in cultivated barley from East Asia. Theor. Appl. Genet. 130 (2017) 331-344. dx.doi.org/10.1007/s00122-016-2814-z
Youssef H M, Mascher M, Ayoub M A, Stein N, Kilian B, Schnurbusch T Natural diversity of inflorescence architecture traces cryptic domestication genes in barley (Hordeum vulgare L.). Genet. Resour. Crop Evol. 64 (2017) 843-853. dx.doi.org/10.1007/s10722-017-0504-6
2016
Aliyeva-Schnorr L, Stein N, Houben A Collinearity of homoeologous group 3 chromosomes in the genus Hordeum and Secale cereale as revealed by 3H-derived FISH analysis. Chromosome Res. 24 (2016) 231-242. dx.doi.org/10.1007/s10577-016-9518-8
Beier S, Himmelbach A, Schmutzer T, Felder M, Taudien S, Mayer K F X, Platzer M, Stein N, Scholz U, Mascher M Multiplex sequencing of bacterial artificial chromosomes for assembling complex plant genomes. Plant Biotechnol. J. 14 (2016) 1511-1522. dx.doi.org/10.1111/pbi.12511
Houben A, Karimi Ashtiyani R, Ishii T, Stein N, Kumlehn J Generation of haploid plants. (Industrieanmeldung), Veröffentlichung: 03.03.2016, IPK-Nr. 2014/01. EP 14182719.6 (2016).
Huu C N, Kappel C, Keller B, Sicard A, Takebayashi Y, Breuninger H, Nowak M D, Baurle I, Himmelbach A, Burkart M, Ebbing-Lohaus T, Sakakibara H, Altschmied L, Conti E, Lenhard M Presence versus absence of CYP734A50 underlies the style-length dimorphism in primroses. eLife 5 (2016) e17956. dx.doi.org/10.7554/eLife.17956
Jost M Cloning of the plant development regulatory genes MANY NODED DWARF (MND) and LAXATUM-A (LAX-A) by taking advantage of an improved barley genomics infrastructure. (PhD Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Institut für Agrar- und Ernährungswissenschaften der Naturwissenschaftlichen Fakultät III (2016) 184 pp.
Jöst M, Hensel G, Kappel C, Druka A, Sicard A, Hohmann U, Beier S, Himmelbach A, Waugh R, Kumlehn J, Stein N, Lenhard M The INDETERMINATE DOMAIN protein BROAD LEAF1 limits barley leaf width by restricting lateral proliferation. Curr. Biol. 26 (2016) 903-909. dx.doi.org/10.1016/j.cub.2016.01.047
Jost M, Taketa S, Mascher M, Himmelbach A, Yuo T, Shahinnia F, Rutten T, Druka A, Schmutzer T, Steuernagel B, Beier S, Taudien S, Scholz U, Morgante M, Waugh R, Stein N A homolog of Blade-On-Petiole 1 and 2 (BOP1/2) controls internode length and homeotic changes of the barley inflorescence. Plant Physiol. 171 (2016) 1113-1127. dx.doi.org/10.1104/pp.16.00124
Mascher M, Schuenemann V J, Davidovich U, Marom N, Himmelbach A, Hübner S, Korol A, David M, Reiter E, Riehl S, Schreiber M, Vohr S H, Green R E, Dawson I K, Russell J, Kilian B, Muehlbauer G J, Waugh R, Fahima T, Krause J, Weiss E, Stein N Genomic analysis of 6,000-year-old cultivated grain illuminates the domestication history of barley. Nat. Genet. 48 (2016) 1089-1093. dx.doi.org/10.1038/ng.3611
Nakamura S, Pourkheirandish M, Morishige H, Kubo Y, Nakamura M, Ichimura K, Seo S, Kanamori H, Wu J, Ando T, Hensel G, Sameri M, Stein N, Sato K, Matsumoto T, Yano M, Komatsuda T Mitogen-Activated Protein Kinase 3 regulates seed dormancy in barley. Curr. Biol. 26 (2016) 775-781. dx.doi.org/10.1016/j.cub.2016.01.024
Russell J, Mascher M, Dawson I K, Kyriakidis S, Calixto C, Freund F, Bayer M, Milne I, Marshall-Griffiths T, Heinen S, Hofstad A, Sharma R, Himmelbach A, Knauft M, van Zonneveld M, Brown J W, Schmid K, Kilian B, Muehlbauer G J, Stein N, Waugh R Exome sequencing of geographically diverse barley landraces and wild relatives gives insights into environmental adaptation. Nat. Genet. 48 (2016) 1024-1030. dx.doi.org/10.1038/ng.3612
Wendler N Unlocking the secondary gene pool of barley for breeding and research. (PhD Thesis, kumulativ) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Institut für Agrar- und Ernährungswissenschaften der Naturwissenschaftlichen Fakultät III (2016) 111 pp.
2015
Aliyeva-Schnorr L, Beier S, Karafiátová M, Schmutzer T, Scholz U, Doležel J, Stein N, Houben A Cytogenetic mapping with centromeric BAC contigs shows that this recombination-poor region comprises more than half of barley chromosome 3H. Plant J. 84 (2015) 385–394. dx.doi.org/10.1111/tpj.13006
Banaei-Moghaddam A M, Martis M M, Macas J, Gundlach H, Himmelbach A, Altschmied L, Mayer K F, Houben A Genes on B chromosomes: Old questions revisited with new tools. Biochim. Biophys. Acta 1849 (2015) 64-70. dx.doi.org/10.1016/j.bbagrm.2014.11.007
Brown R H, Singh J, Singh S, Dahleen L S, Lemaux P G, Stein N, Mascher M, Bregitzer P Behavior of a modified Dissociation element in barley: a tool for genetic studies and for breeding transgenic barley. Mol. Breed. 35 (2015) 85. dx.doi.org/10.1007/s11032-015-0193-9
Chapman J A, Mascher M, Buluç A, Barry K, Georganas E, Session A, Strnadova V, Jenkins J, Seghal S, Oliker L, Schmutz J, Yelick K A, Scholz U, Waugh R, Poland J A, Muehlbauer G J, Stein N, Rokhsar D S A whole-genome shotgun approach for assembling and anchoring the hexaploid bread wheat genome. Genome Biol. 16 (2015) 26. dx.doi.org/10.1186/s13059-015-0582-8
Colmsee C, Beier S, Himmelbach A, Schmutzer T, Stein N, Scholz U, Mascher M BARLEX – the barley draft genome explorer. Mol. Plant 8 (2015) 964-966. dx.doi.org/10.1016/j.molp.2015.03.009
Cviková K, Cattonaro F, Alaux M, Stein N, Mayer K F, Doležel J, Bartoš J High-throughput physical map anchoring via BAC-pool sequencing. BMC Plant Biol. 15 (2015) 99. dx.doi.org/10.1186/s12870-015-0429-1
Karimi-Ashtiyani R, Ishii T, Niessen M, Stein N, Heckmann S, Gurushidze M, Banaei-Moghaddam A M, Fuchs J, Schubert V, Koch K, Weiss O, Demidov D, Schmidt K, Kumlehn J, Houben A Point mutation impairs centromeric CENH3 loading and induces haploid plants. Proc. Natl. Acad. Sci. U.S.A. 112 (2015) 11211-11216. dx.doi.org/10.1073/pnas.1504333112
Li J, Gyawali Y P, Zhou R, Stein N, Nasuda S, Endo T R Comparative study of the structure of chromosome 1R derived from Secale montanum and Secale cereale. Plant Breed. 134 (2015) 675-683. dx.doi.org/10.1111/pbr.12314
Li M Map-based cloning of the gene albostrians in barley (Hordeum vulgare L.). (PhD Thesis) Berlin, Humboldt-Universität zu Berlin, Lebenswissenschaftliche Fakultät (2015) 140 pp.
Muñoz-Amatriaín M, Lonardi S, Luo M, Madishetty K, Svensson J, Moscou M, Wanamaker S, Jiang T, Kleinhofs A, Muehlbauer G, Wise R, Stein N, Ma Y, Rodriguez E, Kudrna D, Bhat P R, Chao S, Condamine P, Heinen S, Resnik J, Wing R, Witt H N, Alpert M, Beccuti M, Bozdag S, Cordero F, Mirebrahim H, Ounit R, Wu Y, You F, Zheng J, Šimková H, Doležel J, Grimwood J, Schmutz J, Duma D, Altschmied L, Blake T, Bregitzer P, Cooper L, Dilbirligi M, Falk A, Feiz L, Graner A, Gustafson P, Hayes P, Lemaux P, Mammadov J, Close T Sequencing of 15,622 gene-bearing BACs clarifies the gene-dense regions of the barley genome. Plant J. 84 (2015) 216-227. dx.doi.org/10.1111/tpj.12959
Neumann K, Klukas C, Friedel S, Rischbeck P, Chen D, Entzian A, Stein N, Graner A, Kilian B Dissecting spatio-temporal biomass accumulation in barley under different water regimes using high-throughput image analysis. Plant Cell Environ. 38 (2015) 1980-1996. dx.doi.org/10.1111/pce.12516
Perovic J, Silvar C, Perovic D, Stein N, Ordon F Fluorescence-based CAPS multiplex genotyping on capillary electrophoresis systems. Bio-protocol 5 (2015) e1472.
Pourkheirandish M, Hensel G, Kilian B, Senthil N, Chen G, Sameri M, Azhaguvel P, Sakuma S, Dhanagond S, Sharma R, Mascher M, Himmelbach A, Gottwald S, Nair S K, Tagiri A, Yukuhiro F, Nagamura Y, Kanamori H, Matsumoto T, Willcox G, Middleton C P, Wicker T, Walther A, Waugh R, Fincher G B, Stein N, Kumlehn J, Sato K, Komatsuda T Evolution of the grain dispersal system in barley. Cell 162 (2015) 527-539. dx.doi.org/10.1016/j.cell.2015.07.002
Staňková H, Valárik M, Lapitan N V, Berkman P, Batley J, Edwards D, Luo M-C, Tulpová Z, Kubaláková M, Stein N, Doležel J, Šimková H Chromosomal genomics facilitates fine mapping of a Russian wheat aphid resistance gene. Theor. Appl. Genet. 128 (2015) 1373-1383. dx.doi.org/10.1007/s00122-015-2512-2
Tavakol E, Okagaki R, Verderio G, Shariati V, Hussien A, Bilgic H, Scanlon M J, Todt N R, Close T J, Druka A, Waugh R, Steuernagel B, Ariyadasa R, Himmelbach A, Stein N, Muehlbauer G J, Rossini L The barley Uniculme4 gene encodes a BLADE-ON-PETIOLE-like protein that controls tillering and leaf patterning. Plant Physiol. 168 (2015) 164-174. dx.doi.org/10.1104/pp.114.252882
Ui H, Sameri M, Pourkheirandish M, Chang M C, Shimada H, Stein N, Komatsuda T, Handa H High-resolution genetic mapping and physical map construction for the fertility restorer Rfm1 locus in barley. Theor. Appl. Genet. 128 (2015) 283-290. dx.doi.org/10.1007/s00122-014-2428-2
Vu G T H, Schmutzer T, Bull F, Cao H X, Fuchs J, Tran D T, Jovtchev G, Pistrick K, Stein N, Pecinka A, Neumann P, Novák P, Macas J, Dear P H, Blattner F R, Scholz U, Schubert I Comparative genome analysis reveals divergent genome size evolution in a carnivorous plant genus. Plant Genome 8 (2015) 1-14. dx.doi.org/10.3835/plantgenome2015.04.0021
Wendler N, Mascher M, Himmelbach A, Johnston P, Pickering R, Stein N Bulbosum to go: a toolbox to utilize Hordeum vulgare/ bulbosum introgressions for breeding and beyond. Mol. Plant 8 (2015) 1507-1519. dx.doi.org/10.1016/j.molp.2015.05.004
Zakhrabekova S, Dockter C, Ahmann K, Braumann I, Gough S P, Wendt T, Lundqvist U, Mascher M, Stein N, Hansson M Genetic linkage facilitates cloning of Ert-m regulating plant architecture in barley and identified a strong candidate of Ant1 involved in anthocyanin biosynthesis. Plant Mol. Biol. 88 (2015) 609-626. dx.doi.org/10.1007/s11103-015-0350-x
Zang W, Eckstein P E, Colin M, Voth D, Himmelbach A, Beier S, Stein N, Scoles G J, Beattie A D Fine mapping and identification of a candidate gene for the barley Un8 true loose smut resistance gene. Theor. Appl. Genet. 128 (2015) 1343-1357. dx.doi.org/10.1007/s00122-015-2510-4
2014
Ariyadasa R, Mascher M, Nussbaumer T, Schulte D, Frenkel Z, Poursarebani N, Zhou R, Steuernagel B, Gundlach H, Taudien S, Felder M, Platzer M, Himmelbach A, Schmutzer T, Hedley P E, Muehlbauer G J, Scholz U, Korol A, Mayer K F X, Waugh R, Langridge P, Graner A, Stein N A sequence-ready physical map of barley anchored genetically by two million single-nucleotide polymorphisms. Plant Physiol. 164 (2014) 412-423. dx.doi.org/10.1104/pp.113.228213
Bolger M E, Weisshaar B, Scholz U, Stein N, Usadel B, Mayer K F Plant genome sequencing - applications for crop improvement. Curr. Opin. Biotechnol. 26 (2014) 31-37. dx.doi.org/10.1016/j.copbio.2013.08.019
Braumann I, Stein N, Hansson M Reduced chlorophyll biosynthesis in heterozygous barley magnesium chelatase mutants. Plant Physiol. Biochem. 78 (2014) 10-14. dx.doi.org/10.1016/j.plaphy.2014.02.004
Douchkov D, Lück S, Johrde A, Nowara D, Himmelbach A, Rajaraman J, Stein N, Sharma R, Kilian B, Schweizer P Discovery of genes affecting resistance of barley to adapted and non-adapted powdery mildew fungi. Genome Biol. 15 (2014) 518. dx.doi.org/10.1186/s13059-014-0518-8
Gawroński P, Ariyadasa R, Himmelbach A, Poursarebani N, Kilian B, Stein N, Steuernagel B, Hensel G, Kumlehn J, Sehgal S K, Gill B S, Gould P, Hall A, Schnurbusch T A distorted circadian clock causes early flowering and temperature-dependent variation in spike development in the Eps-3Am mutant of einkorn wheat. Genetics 196 (2014) 1253-1261. dx.doi.org/10.1534/genetics.113.158444
Himmelbach A, Knauft M, Stein N Plant sequence capture optimised for illumina sequencing. Bio-protocol 4 (2014) e1166.
Kumlehn J, Stein N (Eds.) Biotechnological approaches to barley improvement. (Series: Widholm J., J. Kumlehn & T. Nagata (Eds.): Biotechnology in agriculture and forestry, Vol. 69) Berlin Heidelberg: Springer (2014) 433 pp. ISBN 978-3-662-44405-4
Kunze G, Gaillardin C, Czernicka M, Durrens P, Martin T, Böer E, Gabaldón T, Cruz J A, Talla E, Marck C, Goffeau A, Barbe V, Baret P, Baronian K, Beier S, Bleykasten C, Bode R, Casaregola S, Despons L, Fairhead C, Giersberg M, Gierski P P, Hähnel U, Hartmann A, Jankowska D, Jubin C, Jung P, Lafontaine I, Leh-Louis V, Lemaire M, Marcet-Houben M, Mascher M, Morel G, Richard G-F, Riechen J, Sacerdot C, Sarkar A, Savel G, Schacherer J, Sherman D J, Stein N, Straub M-L, Thierry A, Trautwein-Schult A, Vacherie B, Westhof E, Worch S, Dujon B, Souciet J-L, Wincker P, Scholz U, Neuvéglise C The complete genome of Blastobotrys (Arxula) adeninivorans LS3 - a yeast of biotechnological interest. Biotechnol. Biofuels 7 (2014) 66. dx.doi.org/10.1186/1754-6834-7-66
Lüpken T, Stein N, Perovic D, Habekuß A, Serfling A, Krämer I, Hähnel U, Steuernagel B, Scholz U, Ariyadasa R, Martis M M, Mayer K F X, Niks R E, Collins N C, Friedt W, Ordon F High resolution mapping of the barley Ryd3 locus controlling tolerance to BYDV. Mol. Breed. 33 (2014) 477-488. dx.doi.org/10.1007/s11032-013-9966-1
Mascher M, Jost M, Kuon J E, Himmelbach A, Assfalg A, Beier S, Scholz U, Graner A, Stein N Mapping-by-sequencing accelerates forward genetics in barley. Genome Biol. 15 (2014) R78. dx.doi.org/10.1186/gb-2014-15-6-r78
Mascher M, Stein N Genetic anchoring of whole-genome shotgun assemblies. Front. Genet. 5 (2014) 208. dx.doi.org/10.3389/fgene.2014.00208
Mazaheri M, Kianian P M A, Mergoum M, Valentini G L, Seetan R, Pirseyedi S M, Kumar A, Gu Y Q, Stein N, Kubaláková M, Doležel J, Denton A M, Kianian S F Transposable element junctions in marker development and genomic characterization of barley. Plant Genome 7 (2014) dx.doi.org/10.3835/plantgenome2013.10.0036
Middleton C P, Senerchia N, Stein N, Akhunov E D, Keller B, Wicker T, Kilian B Sequencing of chloroplast genomes from wheat, barley, rye and their relatives provides a detailed insight into the evolution of the Triticeae tribe. PLoS One 9 (2014) e85761. dx.doi.org/10.1371/journal.pone.0085761
Pankin A, Campoli C, Dong X, Kilian B, Sharma R, Himmelbach A, Saini R, Davis S J, Stein N, Schneeberger K, von Korff M Mapping-by-sequencing identifies HvPHYTOCHROME C as a candidate gene for the early maturity 5 locus modulating the circadian clock and photoperiodic flowering in barley. Genetics 198 (2014) 383-396. dx.doi.org/10.1534/genetics.114.165613
Pasquariello M, Barabaschi D, Himmelbach A, Steuernagel B, Ariyadasa R, Stein N, Gandolfi F, Tenedini E, Bernardis I, Tagliafico E, Pecchioni N, Francia E The barley Frost resistance-H2 locus. Funct. Integr. Genomics 14 (2014) 85-100. dx.doi.org/10.1007/s10142-014-0360-9
Poursarebani N, Ma L, Schmutzer T, Houben A, Stein N FISH mapping for physical map improvement in the large genome of barley: a case study on chromosome 2H. Cytogenet. Genome Res. 143 (2014) 275-279. dx.doi.org/10.1159/000366028
Poursarebani N, Nussbaumer T, Šimková H, Šafář J, Witsenboer H, van Oeveren J, International Wheat Genome Sequencing C, Doležel J, Mayer K F X, Stein N, Schnurbusch T Whole-genome profiling and shotgun sequencing delivers an anchored, gene-decorated, physical map assembly of bread wheat chromosome 6A. Plant J. 79 (2014) 334-347. dx.doi.org/10.1111/tpj.12550
Schmutzer T, Ma L, Pousarebani N, Bull F, Stein N, Houben A, Scholz U Kmasker – a tool for in silico prediction of single-copy FISH probes for the large-genome species Hordeum vulgare. Cytogenet. Genome Res. 142 (2014) 66-78. dx.doi.org/10.1159/000356460
Stein N Erfolgstory: Gerste Genomsequenzierung. GFP Geschäftsbericht (2014) 17-18.
Stein N Development of sequence resources. In: Kumlehn J, Stein N (Eds.): Biotechnological approaches to barley improvement. (Series: Biotechnology in agriculture and forestry, Vol. 69) Berlin: Springer (2014) 271-285. dx.doi.org/10.1007/978-3-662-44406-1_14 ISBN 978-3-662-44405-4
Stein N, Steuernagel B Advances in sequencing the barley genome. In: Tuberosa R, Graner A, Frison E (Eds.): Genomics of plant genetic resources. Vol. 1. Managing, sequencing and mining genetic resources. Dordrecht [u.a.]: Springer (2014) 391-403. dx.doi.org/10.1007/978-94-007-7572-5_16 ISBN 978-94-007-7571-8
Stein N, Yang P, Lüpken P, Ordon F New isolated nucleic acid comprising specified nucleotide sequences, useful in a gene marker i.e. useful for the selection and/or isolation of a barley plant having a resistance against yellow mosaic virus. (Patent), Veröffentlichung: 21.08.2014, IPK-Nr. 2012/14. DE102013101617 (2014).
The International Wheat Genome Sequencing Consortium (IWGSC; IPK Authors: Mascher M, Scholz, U. & Stein, N.) A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome. Science 345 (2014) 1251788. dx.doi.org/10.1126/science.1251788
Wendler N, Mascher M, Nöh C, Himmelbach A, Scholz U, Ruge-Wehling B, Stein N Unlocking the secondary gene-pool of barley with next-generation sequencing. Plant Biotechnol. J. 12 (2014) 1122-1131. dx.doi.org/10.1111/pbi.12219
Yang P Map-based coning of susceptibility factors for Bymovirus in barley (H. vulgare L.). (PhD Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Institut für Agrar- und Ernährungswissenschaften der Naturwissenschaftlichen Fakultät III (2014) 92 pp.
Yang P, Habekuß A, Ordon F, Stein N Analysis of bymovirus resistance genes on proximal barley chromosome 4HL provides the basis for precision breeding for BaMMV/BaYMV resistance. Theor. Appl. Genet. 127 (2014) 1625-1634. dx.doi.org/10.1007/s00122-014-2324-9
Yang P, Lüpken T, Habekuss A, Hensel G, Steuernagel B, Kilian B, Ariyadasa R, Himmelbach A, Kumlehn J, Scholz U, Ordon F, Stein N PROTEIN DISULFIDE ISOMERASE LIKE 5-1 is a susceptibility factor to plant viruses. Proc. Natl. Acad. Sci. U.S.A. 111 (2014) 2104-2109. dx.doi.org/10.1073/pnas.1320362111
2013
Biselli C, Urso S, Tacconi G, Steuernagel B, Schulte D, Gianinetti A, Bagnaresi P, Stein N, Cattivelli L, Valè G Haplotype variability and identification of new functional alleles at the Rdg2a leaf stripe resistance gene locus. Theor. Appl. Genet. 126 (2013) 1575-1586. dx.doi.org/10.1007/s00122-013-2075-z
Karafiátová M, Bartoš J, Kopecký D, Ma L, Sato K, Houben A, Stein N, Doležel J Mapping nonrecombining regions in barley using multicolor FISH. Chromosome Res. 21 (2013) 739-751. dx.doi.org/10.1007/s10577-013-9380-x
Koppolu R, Anwar N, Sakuma S, Tagiri A, Lundqvist U, Pourkheirandish M, Rutten T, Seiler C, Himmelbach A, Ariyadasa R, Youssef H M, Stein N, Sreenivasulu N, Komatsuda T, Schnurbusch T Six-rowed spike4 (Vrs4) controls spikelet determinacy and row-type in barley. Proc. Natl. Acad. Sci. U. S. A. 110 (2013) 13198-13203. dx.doi.org/10.1073/pnas.1221950110
Lüpken T, Stein N, Perovic D, Habekuss A, Kramer I, Hähnel U, Steuernagel B, Scholz U, Zhou R, Ariyadasa R, Taudien S, Platzer M, Martis M, Mayer K, Friedt W, Ordon F Genomics-based high-resolution mapping of the BaMMV/BaYMV resistance gene rym11 in barley (Hordeum vulgare L.). Theor. Appl. Genet. 126 (2013) 1201-1212. dx.doi.org/10.1007/s00122-013-2047-3
Martis M M, Zhou R, Haseneyer G, Schmutzer T, Vrána J, Kubaláková M, König S, Kugler K G, Scholz U, Hackauf B, Korzun V, Schön C-C, Doležel J, Bauer E, Mayer K F X, Stein N Reticulate evolution of the rye genome. Plant Cell 25 (2013) 3685-3698. dx.doi.org/10.1105/tpc.113.114553
Mascher M, Muehlbauer G J, Rokhsar D S, Chapman J, Schmutz J, Barry K, Munoz-Amatriain M, Close T J, Wise R P, Schulman A H, Himmelbach A, Mayer K F, Scholz U, Poland J A, Stein N, Waugh R Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ). Plant J. 76 (2013) 718-727. dx.doi.org/10.1111/tpj.12319
Mascher M, Richmond T A, Gerhardt D J, Himmelbach A, Clissold L, Sampath D, Ayling S, Steuernagel B, Pfeifer M, D'Ascenzo M, Akhunov E D, Hedley P E, Gonzales A M, Morrell P L, Kilian B, Blattner F R, Scholz U, Mayer K F, Flavell A J, Muehlbauer G J, Waugh R, Jeddeloh J A, Stein N Barley whole exome capture: a tool for genomic research in the genus Hordeum and beyond. Plant J. 76 (2013) 494-505. dx.doi.org/10.1111/tpj.12294
Mascher M, Wu S, Amand P S, Stein N, Poland J Application of genotyping-by-sequencing on semiconductor sequencing platforms: a comparison of genetic and reference-based marker ordering in barley. PLoS One 8 (2013) e76925. dx.doi.org/10.1371/journal.pone.0076925
Matthies I E, Weise S, Förster J, Korzun V, Stein N, Röder M S Nitrogen-metabolism related genes in barley - haplotype diversity, linkage mapping and associations with malting and kernel quality parameters. BMC Genet 14 (2013) e77. dx.doi.org/10.1186/1471-2156-14-77
McCouch S, Baute G J, Bradeen J, Bramel P, Bretting P K, Buckler E, Burke J M, Charest D, Cloutier S, Cole G, Dempewolf H, Dingkuhn M, Feuillet C, Gepts P, Grattapaglia D, Guarino L, Jackson S, Knapp S, Langridge P, Lawton-Rauh A, Lijua Q, Lusty C, Michael T, Myles S, Naito K, Nelson R L, Pontarollo R, Richards C M, Rieseberg L, Ross-Ibarra J, Rounsley S, Hamilton R S, Schurr U, Stein N, Tomooka N, van der Knaap E, van Tassel D, Toll J, Valls J, Varshney R K, Ward J, Waugh R, Wenzl P, Zamir D Agriculture: Feeding the future. Nature 499 (2013) 23-24. dx.doi.org/10.1038/499023a
Middleton C P, Stein N, Keller B, Kilian B, Wicker T Comparative analysis of genome composition in Triticeae reveals strong variation in transposable element dynamics and nucleotide diversity. Plant J. 73 (2013) 347-356. dx.doi.org/10.1111/tpj.12048
Muñoz-Amatriaín M, Eichten S R, Wicker T, Richmond T A, Mascher M, Steuernagel B, Scholz U, Ariyadasa R, Spannagl M, Nussbaumer T, Mayer K F X, Taudien S, Platzer M, Jeddeloh J A, Springer N M, Muehlbauer G J, Stein N Distribution, functional impact, and origin mechanisms of copy number variation in the barley genome. Genome Biol. 14 (2013) R58. dx.doi.org/10.1186/gb-2013-14-6-r58
Perovic J, Silvar C, Koenig J, Stein N, Perovic D, Ordon F A versatile fluorescence-based multiplexing assay for CAPS genotyping on capillary electrophoresis systems. Mol. Breed. 32 (2013) 61-69. dx.doi.org/10.1007/s11032-013-9852-x
Poursarebani N, Ariyadasa R, Zhou R, Schulte D, Steuernagel B, Martis M M, Graner A, Schweizer P, Scholz U, Mayer K, Stein N Conserved synteny-based anchoring of the barley genome physical map. Funct. Integr. Genomics 13 (2013) 339-350. dx.doi.org/10.1007/s10142-013-0327-2
Sakuma S, Pourkheirandish M, Hensel G, Kumlehn J, Stein N, Tagiri A, Yamaji N, Ma J F, Sassa H, Koba T, Komatsuda T Divergence of expression pattern contributed to neofunctionalization of duplicated HD-Zip I transcription factor in barley. New Phytol. 197 (2013) 939-948. dx.doi.org/10.1111/nph.12068
Yang P, Lüpken T, Ordon F, Stein N Mittel zur Selektion und/oder Erzeugung von gegen Gelbmosaikvirose resistenter Gerste (Patentantrag). (2013) PAT 1448.
Yang P, Perovic D, Habekuss A, Zhou R, Graner A, Ordon F, Stein N Gene-based high-density mapping of the gene rym7 conferring resistance to Barley mild mosaic virus (BaMMV). Mol. Breed. 32 (2013) 27-37. dx.doi.org/10.1007/s11032-013-9842-z
2012
Ariyadasa R, Stein N Advances in BAC-based physical mapping and map integration strategies in plants. J. Biomed. Biotechnol. 2012 (2012) 11 pages, Article ID 184854. dx.doi.org./10.1155/2012/184854
Buchmann J P, Matsumoto T, Stein N, Keller B, Wicker T Interspecies sequence comparison of Brachypodium reveals how transposon activity corrodes genome colinearity. Plant J. 71 (2012) 550-563. dx.doi.org/10.1111/j.1365-313X.2012.05007.x
Cockram J, Thiel T, Steuernagel B, Stein N, Taudien S, Bailey P C, O'Sullivan D M Genome dynamics explain the evolution of flowering time CCT domain gene families in the Poaceae. PLoS One 7 (2012) e45307. dx.doi.org/10.1371/journal.pone.0045307
Comadran J, Kilian B, Russell J, Ramsay L, Stein N, Ganal M, Shaw P, Bayer M, Thomas W, Marshall D, Hedley P, Tondelli A, Pecchioni N, Francia E, Korzun V, Walther A, Waugh R Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley. Nat. Genet. 44 (2012) 1388-1392. dx.doi.org/10.1038/ng.2447
Feuillet C, Stein N, Rossini L, Praud S, Mayer K, Schulman A, Eversole K, Appels R Integrating cereal genomics to support innovation in the Triticeae. Funct. Integr. Genomics 12 (2012) 573-583. dx.doi.org/10.1007/s10142-012-0300-5
Houston K, Druka A, Bonar N, Macaulay M, Lundqvist U, Franckowiak J, Morgante M, Stein N, Waugh R Analysis of the barley bract suppression gene Trd1. Theor. Appl. Genet. 125 (2012) 33-45. dx.doi.org/10.1007/s00122-012-1814-x
Huynh B L, Mather D E, Schreiber A W, Toubia J, Baumann U, Shoaei Z, Stein N, Ariyadasa R, Stangoulis J C, Edwards J, Shirley N, Langridge P, Fleury D Clusters of genes encoding fructan biosynthesizing enzymes in wheat and barley. Plant Mol. Biol. 80 (2012) 299-314. dx.doi.org/10.1007/s11103-012-9949-3
Mameaux S, Cockram J, Thiel T, Steuernagel B, Stein N, Taudien S, Jack P, Werner P, Gray J C, Greenland A J, Powell W Molecular, phylogenetic and comparative genomic analysis of the cytokinin oxidase/dehydrogenase gene family in the Poaceae. Plant Biotechnol. J. 10 (2012) 67-82. dx.doi.org/10.1111/j.1467-7652.2011.00645.x
Martis M M, Klemme S, Banaei Moghaddam A M, Blattner F R, Macas J, Schmutzer T, Scholz U, Gundlach H, Wicker T, Šimková H, Novák P, Neumann P, Kubaláková M, Bauer E, Haseneyer G, Fuchs J, Doležel J, Stein N, Mayer K F X, Houben A Selfish supernumerary chromosome reveals its origin as a mosaic of host genome and organellar sequences. Proc. Natl. Acad. Sci. U.S.A. 109 (2012) 13343-13346. dx.doi.org/10.1073/pnas.1204237109
Mayer K F X, Waugh R, Langridge P, Close T J, Wise R P, Graner A, Matsumoto T, Sato K, Schulman A, Ariyadasa R, Schulte D, Poursarebani N, Zhou R, Steuernagel B, Mascher M, Scholz U, Shi B, Madishetty K, Svensson J T, Bhat P, Moscou M, Resnik J, Muehlbauer G J, Hedley P, Liu H, Morris J, Frenkel Z, Korol A, Bergès H, Taudien S, Felder M, Groth M, Platzer M, Himmelbach A, Lonardi S, Duma D, Alpert M, Cordero F, Beccuti M, Ciardo G, Ma Y, Wanamaker S, Cattonaro F, Vendramin V, Scalabrin S, Radovic S, Wing R, Morgante M, Nussbaumer T, Gundlach H, Martis M, Poland J, Pfeifer M, Moisy C, Tanskanen J, Zuccolo A, Spannagl M, Russell J, Druka A, Marshall D, Bayer M, Swarbreck D, Sampath D, Ayling S, Febrer M, Caccamo M, Tanaka T, Wannamaker S, Schmutzer T, Brown J W S, Fincher G B, Stein N A physical, genetic and functional sequence assembly of the barley genome. Nature 491 (2012) 711-716. dx.doi.org/10.1038/nature11543
Neumann K, Stein N, Graner A, Klukas C, Entzian A, Kilian B Non-destructive phenotyping using the high-throughput LemnaTec-Scanalyzer 3D platform to investigate drought tolerance in barley. In: Börner A, Kobijlski B (Eds.): Proceedings of the 15th International EWAC Conference, 7 - 11 November 2011, Novi Sad, Serbia. (Series: European Wheat Aneuploid Co-operative newsletter, Vol. 15) Gatersleben: Leibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung (2012) 158-160.
Shahinnia F, Druka A, Franckowiak J, Morgante M, Waugh R, Stein N High resolution mapping of Dense spike-ar (dsp.ar) to the genetic centromere of barley chromosome 7H. Theor. Appl. Genet. 124 (2012) 373-384. dx.doi.org/10.1007/s00122-011-1712-7
Zakhrabekova S, Gough S P, Braumann I, Müller A H, Lundqvist J, Ahmann K, Dockter C, Matyszczak I, Kurowska M, Druka A, Waugh R, Graner A, Stein N, Steuernagel B, Lundqvist U, Hansson M Induced mutations in circadian clock regulator Mat-a facilitated short-season adaptation and range extension in cultivated barley. Proc. Natl. Acad. Sci. U.S.A. 109 (2012) 4326-4331. dx.doi.org/10.1073/pnas.1113009109
2011
Comadran J, Ramsay L, Mackenzie K, Hayes P, Close T J, Muehlbauer G, Stein N, Waugh R Patterns of polymorphism and linkage disequilibrium in cultivated barley. Theor. Appl. Genet. 122 (2011) 523-531. dx.doi.org/10.1007/s00122-010-1466-7
Druka A, Franckowiak J, Lundqvist U, Bonar N, Alexander J, Houston K, Radovic S, Shahinnia F, Vendramin V, Morgante M, Stein N, Waugh R Genetic dissection of barley morphology and development. Plant Physiol. 155 (2011) 617-627. dx.doi.org/10.1104/pp.110.166249
Graner A, Haseneyer G, Kilian B, Pasam R K, Sharma R, Stein N Nutzung genetischer Vielfalt: Herausforderung und Perspektiven. Agrar Spektrum 44 (2011) 45-61.
Hartmann A, Czauderna T, Hoffmann R, Stein N, Schreiber F HTPheno: An image analysis pipeline for high-throughput plant phenotyping. BMC Bioinformatics 12 (2011) 148. dx.doi.org/10.1186/1471-2105-12-148
Haseneyer G, Schmutzer T, Seidel M, Zhou R, Mascher M, Schon C C, Taudien S, Scholz U, Stein N, Mayer K F, Bauer E From RNA-seq to large-scale genotyping - genomics resources for rye (Secale cereale L.). BMC Plant Biol. 11 (2011) 131. dx.doi.org/10.1186/1471-2229-11-131
Liu H, McNicol J, Bayer M, Morris J A, Cardle L, Marshall D F, Schulte D, Stein N, Shi B J, Taudien S, Waugh R, Hedley P E Highly parallel gene-to-BAC addressing using microarrays. Biotechniques 50 (2011) 165-174. dx.doi.org/10.2144/000113627
Mayer K F X, Martis M, Hedley P E, Šimková H, Liu H, Morris J A, Steuernagel B, Taudien S, Roessner S, Gundlach H, Kubaláková M, Suchánková P, Murat F, Felder M, Nussbaumer T, Graner A, Salse J, Endo T, Sakai H, Tanaka T, Itoh T, Sato K, Platzer M, Matsumoto T, Scholz U, Doležel J, Waugh R, Stein N Unlocking the barley genome by chromosomal and comparative genomics. Plant Cell 23 (2011) 1249-1263. dx.doi.org/10.1105/tpc.110.082537
Schulte D, Ariyadasa R, Shi B, Fleury D, Saski C, Atkins M, Dejong P, Wu C C, Graner A, Langridge P, Stein N BAC library resources for map-based cloning and physical map construction in barley (Hordeum vulgare L.). BMC Genomics 12 (2011) 247. dx.doi.org/10.1186/1471-2164-12-247
Schweizer P, Stein N Large-scale data integration reveals co-localization of gene functional groups with meta-QTL for multiple disease resistance in barley. Mol. Plant Microbe Interact. 24 (2011) 1492-1501. dx.doi.org/10.1094/MPMI-05-11-0107
Sharma S, Sharma S, Kopisch-Obuch F J, Keil T, Laubach E, Stein N, Graner A, Jung C QTL analysis of root-lesion nematode resistance in barley: 1. Pratylenchus neglectus. Theor. Appl. Genet. 122 (2011) 1321-1330. dx.doi.org/10.1007/s00122-011-1533-8
Taudien S, Steuernagel B, Ariyadasa R, Schulte D, Schmutzer T, Groth M, Felder M, Petzold A, Scholz U, Mayer K F, Stein N, Platzer M Sequencing of BAC pools by different next generation sequencing platforms and strategies. BMC Res Notes 4 (2011) 411. dx.doi.org/10.1186/1756-0500-4-411
Wicker T, Mayer K F X, Gundlach H, Martis M, Steuernagel B, Scholz U, Šimková H, Kubaláková M, Choulet F, Taudien S, Platzer M, Feuillet C, Fahima T, Budak H, Doležel J, Keller B, Stein N Frequent gene movement and pseudogene evolution is common to the large and complex genomes of wheat, barley, and their relatives. Plant Cell 23 (2011) 1706-1718. dx.doi.org/10.1105/tpc.111.086629
2010
Cockram J, White J, Zuluaga D L, Smith D, Comadran J, Macaulay M, Luo Z, Kearsey M J, Werner P, Harrap D, Tapsell C, Liu H, Hedley P E, Stein N, Schulte D, Steuernagel B, Marshall D F, Thomas W T, Ramsay L, Mackay I, Balding D J, Consortium T A, Waugh R, O'Sullivan D M Genome-wide association mapping to candidate polymorphism resolution in the unsequenced barley genome. Proc. Natl. Acad. Sci. U. S. A. 107 (2010) 21611-21616. dx.doi.org/10.1073/pnas.1010179107
Druka A, Franckowiak J, Lundqvist U, Bonar N, Alexander J, Guzy-Wrobelska J, Ramsay L, Druka I, Grant I, Macaulay M, Vendramin V, Shahinnia F, Radovic S, Houston K, Harrap D, Cardle L, Marshall D, Morgante M, Stein N, Waugh R Exploiting induced variation to dissect quantitative traits in barley. Biochem. Soc. Trans. 38 (2010) 683-688. dx.doi.org/10.1042/BST0380683
Kocsy G, Athmer B, Perovic D, Himmelbach A, Szücs A, Vashegyi I, Schweizer P, Galiba G, Stein N Regulation of gene expression by chromosome 5A during cold hardening in wheat. Mol. Genet. Genomics 283 (2010) 351-363. dx.doi.org/10.1007/s00438-010-0520-0
Ma L, Vu G T, Schubert V, Watanabe K, Stein N, Houben A, Schubert I Synteny between Brachypodium distachyon and Hordeum vulgare as revealed by FISH. Chromosome Res. 18 (2010) 841-850. dx.doi.org/10.1007/s10577-010-9166-3
Nair S K, Wang N, Turuspekov Y, Pourkheirandish M, Sinsuwongwat S, Chen G X, Sameri M, Tagiri A, Honda I, Watanabe Y, Kanamori H, Wicker T, Stein N, Nagamura Y, Matsumoto T, Komatsuda T Cleistogamous flowering in barley arises from the suppression of microRNA-guided HvAP2 mRNA cleavage. Proc. Natl. Acad. Sci. U.S.A. 107 (2010) 490-495. dx.doi.org/10.1073/pnas.0909097107
Sečenji M, Lendvai Á, Miskolczi P, Kocsy G, Gallé Á, Szucs A, Hoffmann B, Sárvári É, Schweizer P, Stein N, Dudits D, Györgyey J Differences in root functions during long-term drought adaptation: comparison of active gene sets of two wheat genotypes. Plant Biol. 12 (2010) 871-882. dx.doi.org/10.1111/j.1438-8677.2009.00295.x
Vu G T, Wicker T, Buchmann J P, Chandler P M, Matsumoto T, Graner A, Stein N Fine mapping and syntenic integration of the semi-dwarfing gene sdw3 of barley. Funct. Integr. Genomics 10 (2010) 509-521. dx.doi.org/10.1007/s10142-010-0173-4
Waugh R, Marshall D, Thomas B, Comadran J, Russell J, Close T, Stein N, Hayes P, Muehlbauer G, Cockram J, O'Sullivan D, Mackay I, Flavell A, Ramsay L Whole-genome association mapping in elite inbred crop varieties. Genome 53 (2010) 967-972. dx.doi.org/10.1139/g10-078
2009
Bolot S, Abrouk M, Masood-Quraishi U, Stein N, Messing J, Feuillet C, Salse J The 'inner circle' of the cereal genomes. Curr. Opin. Plant Biol. 12 (2009) 119-125. dx.doi.org/10.1016/j.pbi.2008.10.011
Close T J, Bhat P R, Lonardi S, Wu Y, Rostoks N, Ramsay L, Druka A, Stein N, Svensson J T, Wanamaker S, Bozdag S, Roose M L, Moscou M J, Chao S, Varshney R K, Szucs P, Sato K, Hayes P M, Matthews D E, Kleinhofs A, Muehlbauer G J, DeYoung J, Marshall D F, Madishetty K, Fenton R D, Condamine P, Graner A, Waugh R Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10 (2009) 582. dx.doi.org/10.1186/1471-2164-10-582
Eversole K, Graner A, Stein N Wheat and barley genome sequencing. In: Feuillet C, Muehlbauer G (Eds.): Genetics and genomics of the Triticeae, 1st ed. (Series: Plant genetics and genomics: crops and models, Vol. 7) New York, NY: Springer (2009) 713-742. dx.doi.org/10.1007/978-0-387-77489-3_24 ISBN 978-0-387-77488-6
Gottwald S, Bauer P, Komatsuda T, Lundqvist U, Stein N TILLING in the two-rowed barley cultivar 'Barke' reveals preferred sites of functional diversity in the gene HvHox1. BMC Res. Notes 2 (2009) 258. dx.doi.org/10.1186/1756-0500-2-258
Gray J, Bevan M, Brutnell T, Buell C R, Cone K, Hake S, Jackson D, Kellogg E, Lawrence C, McCouch S, Mockler T, Moose S, Paterson A, Peterson T, Rokshar D, Souza G M, Springer N, Stein N, Timmermans M, Wang G L, Grotewold E A recommendation for naming transcription factor proteins in the grasses. Plant Physiol. 149 (2009) 4-6. dx.doi.org/10.1104/pp.108.128504
Hübner S, Höffken M, Oren E, Haseneyer G, Stein N, Graner A, Schmid K, Fridman E Strong correlation of wild barley (Hordeum spontaneum) population structure with temperature and precipitation variation. Mol. Ecol. 18 (2009) 1523-1536. dx.doi.org/10.1111/j.1365-294X.2009.04106.x
Mayer K F, Taudien S, Martis M, Simkova H, Suchankova P, Gundlach H, Wicker T, Petzold A, Felder M, Steuernagel B, Scholz U, Graner A, Platzer M, Dolezel J, Stein N Gene content and virtual gene order of barley chromosome 1H. Plant Physiol. 151 (2009) 496-505. dx.doi.org/10.1104/pp.109.142612
Schulte D, Close T J, Graner A, Langridge P, Matsumoto T, Muehlbauer G, Sato K, Schulman A H, Waugh R, Wise R P, Stein N The international barley sequencing consortium--at the threshold of efficient access to the barley genome. Plant Physiol. 149 (2009) 142-147. dx.doi.org/10.1104/pp.108.128967
Stein N Physical mapping in the Triticeae. In: Feuillet C, Muehlbauer G (Eds.): Genetics and genomics of the Triticeae, 1st ed. (Series: Plant genetics and genomics: crops and models, Vol. 7) New York, NY: Springer (2009) 317-335. dx.doi.org/10.1007/978-0-387-77489-3_11 ISBN 978-0-387-77488-6
Steuernagel B, Taudien S, Gundlach H, Seidel M, Ariyadasa R, Schulte D, Petzold A, Felder M, Graner A, Scholz U, Mayer K F, Platzer M, Stein N De novo 454 sequencing of barcoded BAC pools for comprehensive gene survey and genome analysis in the complex genome of barley. BMC Genomics 10 (2009) 547. dx.doi.org/10.1186/1471-2164-10-547
Thiel T, Graner A, Waugh R, Grosse I, Close T J, Stein N Evidence and evolutionary analysis of ancient whole-genome duplication in barley predating the divergence from rice. BMC Evol. Biol. 9 (2009) 209. dx.doi.org/10.1186/1471-2148-9-209
Turuspekov Y, Honda I, Watanabe Y, Stein N, Komatsuda T An inverted and micro-colinear genomic regions of rice and barley carrying the cly1 gene for cleistogamy. Breed. Sci. 59 (2009) 657-663. dx.doi.org/10.1270/jsbbs.59.657
Wicker T, Krattinger S G, Lagudah E S, Komatsuda T, Pourkheirandish M, Matsumoto T, Cloutier S, Reiser L, Kanamori H, Sato K, Perovic D, Stein N, Keller B Analysis of intraspecies diversity in wheat and barley genomes identifies breakpoints of ancient haplotypes and provides insight into the structure of diploid and hexaploid Triticeae gene pools. Plant Physiol. 149 (2009) 258-270. dx.doi.org/10.1104/pp.108.129734
Wicker T, Taudien S, Houben A, Keller B, Graner A, Platzer M, Stein N A whole-genome snapshot of 454 sequences exposes the composition of the barley genome and provides evidence for parallel evolution of genome size in wheat and barley. Plant J. 59 (2009) 712-722. dx.doi.org/10.1111/j.1365-313X.2009.03911.x
2008
Kota R, Varshney R K, Prasad M, Zhang H, Stein N, Graner A EST-derived single nucleotide polymorphism markers for assembling genetic and physical maps of the barley genome. Funct. Integr. Genomics 8 (2008) 223-233. dx.doi.org/10.1007/s10142-007-0060-9
Sreenivasulu N, Usadel B, Winter A, Radchuk V, Scholz U, Stein N, Weschke W, Strickert M, Close T J, Stitt M, Graner A, Wobus U Barley grain maturation and germination: metabolic pathway and regulatory network commonalities and differences highlighted by New MapMan/PageMan profiling tools. Plant Physiol. 146 (2008) 1738-1758. dx.doi.org/10.1104/pp.107.111781
Waugh R, Rostoks N, Ramsay L, Marshall D, Thomas B, Druka A, Wannamaker S, Svensson J, Bhat P, Graner A, Stein N, Varshney R K, Kearsey M, Luo Z, Potokina E, Close T J Towards whole genome association genetic scans in barley. In: Molina-Cano J L, Christou P, Graner A, Hammer K, Jouve N, Keller B, Lasa J M, Powell W, Royo C, Shewry P, Stanca A M (Eds.): Cereal science and technology for feeding ten billion people: genomics era and beyond, Proceedings for the Meeting of the Eucarpia Cereal Section, Lleida (Spain), 13.-17.11.2006. (Series: Options Méditerranéennes, Series A, Séminaires Méditerranéens, Vol. 81) Zaragoza: CIHEAM / IRTA (2008) 99-102. ISBN 2-85352-404-3
Wicker T, Narechania A, Sabot F, Stein J, Vu G T, Graner A, Ware D, Stein N Low-pass shotgun sequencing of the barley genome facilitates rapid identification of genes, conserved non-coding sequences and novel repeats. BMC Genomics 9 (2008) 518. dx.doi.org/10.1186/1471-2164-9-518
2007
Altmann T, Strompen G, Gottwald S, Stein N, Hohmann U, Jung C, Holtgräwe D, Weisshaar B, Lunn J, Stitt M GABI-TILL: Zentrale Plattform zur funktionalen Untersuchung von Leitgenen in Feldfrüchten mit Hilfe der TILLING-Technologie. GenomXPress Sonderausgabe März (2007) 15.
Komatsuda T, Pourkheirandish M, He C F, Azhaguvel P, Kanamori H, Perovic D, Stein N, Graner A, Wicker T, Tagiri A, Lundqvist U, Fujimura T, Matsuoka M, Matsumoto T, Yano M Six-rowed barley originated from a mutation in a homeodomain-leucine zipper I-class homeobox gene. Proc. Natl. Acad. Sci. U.S.A. 104 (2007) 1424-1429. dx.doi.org/10.1073/pnas.0608580104
Kuenne C, Grosse I, Matthies I, Scholz U, Sretenovic-Rajicic T, Stein N, Stephanik A, Steuernagel B, Weise S Using data warehouse technology in crop plant bioinformatics. J. Integr. Bioinform. 4 (2007) 88. dx.doi.org/10.2390/biecoll-jib-2007-88
Pourkheirandish M, Wicker T, Stein N, Fujimura T, Komatsuda T Analysis of the barley chromosome 2 region containing the six-rowed spike gene vrs1 reveals a breakdown of rice-barley micro collinearity by a transposition. Theor. Appl. Genet. 114 (2007) 1357-1365. dx.doi.org/10.1007/s00122-007-0522-4
Stein N Triticeae genomics: advances in sequence analysis of large genome cereal crops. Chromosome Res. 15 (2007) 21-31. dx.doi.org/10.1007/s10577-006-1107-9
Stein N Cereal genome colinearity revisited - advances through cereal genomics. Vortr. Pflanzenzüch. 71 (2007) 282-288.
Stein N Der Countdown läuft - Wissenschaftler am IPK übernehmen führende Rolle in der Gersten-Genomforschung. GenomXPress 4 (2007) 4-6.
Stein N, Prasad M, Scholz U, Thiel T, Zhang H, Wolf M, Kota R, Varshney R K, Perovic D, Grosse I, Graner A A 1,000-loci transcript map of the barley genome: new anchoring points for integrative grass genomics. Theor. Appl. Genet. 114 (2007) 823-839. dx.doi.org/10.1007/s00122-006-0480-2
Stracke S, Presterl T, Stein N, Perovic D, Ordon F, Graner A Effects of introgression and recombination on haplotype structure and linkage disequilibrium surrounding a locus encoding Bymovirus resistance in barley. Genetics 175 (2007) 805-817. dx.doi.org/10.1534/genetics.106.063800
Varshney R K, Marcel T C, Ramsay L, Russell J, Röder M S, Stein N, Waugh R, Langridge P, Niks R E, Graner A A high density barley microsatellite consensus map with 775 SSR loci. Theor. Appl. Genet. 114 (2007) 1091-1103. dx.doi.org/10.1007/s00122-007-0503-7
Weidner A, Varshney R K, Buck-Sorlin G H, Stein N, Graner A, Börner A Salztoleranz bei Gerste – Assoziationskartierung kontra klassische QTL-Kartierung. Vortr. Pflanzenzücht. 72 (2007) 125-130.
2006
Galiba G, Kocsy G, Vágúkfaövo A, Stein N, Schweizer P, Dubcovsky J, Cattivelli L Gene identification by transcript profiling and real time PCR during cold acclimation using wheat 5A chromosome substitution and recombinant lines. In: Börner A, Pánková K, Snape J W (Eds.): Proceedings of the 13th International EWAC Conference, 27 June - 1 July 2005 Prague, Czech Republic. (Series: European Wheat Aneuploid Co-Operative newsletter, Vol. 13) Gatersleben: Institut für Pflanzengenetik und Kulturpflanzenforschung (2006) 33-37.
Rossini L, Vecchietti A, Nicoloso L, Stein N, Franzago S, Salamini F, Pozzi C Candidate genes for barley mutants involved in plant architecture: an in silico approach. Theor. Appl. Genet. 112 (2006) 1073-1085. dx.doi.org/10.1007/s00122-006-0209-2
Rostoks N, Ramsay L, MacKenzie K, Cardle L, Bhat P R, Roose M L, Svensson J T, Stein N, Varshney R K, Marshall D F, Graner A, Close T J, Waugh R Recent history of artificial outcrossing facilitates whole-genome association mapping in elite inbred crop varieties. Proc. Natl. Acad. Sci. U.S.A. 103 (2006) 18656-18661. dx.doi.org/10.1073/pnas.0606133103
Varshney R K, Grosse I, Hähnel U, Siefken R, Prasad M, Stein N, Langridge P, Altschmied L, Graner A Genetic mapping and BAC assignment of EST-derived SSR markers shows non-uniform distribution of genes in the barley genome. Theor. Appl. Genet. 113 (2006) 239-250. dx.doi.org/10.1007/s00122-006-0289-z
Weidner A, Varshney R K, Buck-Sorlin G H, Stein N, Graner A, Börner A QTLs for salt tolerance in three different barley mapping populations. In: Börner A, Pánková K, Snape J W (Eds.): Proceedings of the 13th International EWAC Conference, 27 June - 1 July 2005 Prague, Czech Republic. (Series: European Wheat Aneuploid Co-Operative newsletter, Vol. 13) Gatersleben: Institut für Pflanzengenetik und Kulturpflanzenforschung (2006) 51-55.
Wicker T, Schlagenhauf E, Graner A, Close T J, Keller B, Stein N 454 sequencing put to the test using the complex genome of barley. BMC Genomics 7 (2006) 275. dx.doi.org/10.1186/1471-2164-7-275