Autoren Titel
Butardo Jr V M, Seiler C, Sreeenivasulu N, Kuhlmann M Obtaining high-quality transcriptome data from cereal seeds by a modified method for gene expression profiling. J. Vis. Exp. 159 (2020) e60602.
Henke M, Junker A, Neumann K, Altmann T, Gladilin E A two-step registration-classification approach to automated segmentation of multimodal images for high-throughput greenhouse plant phenotyping. Plant Methods 16 (2020) 95.
Johansson K S L, El-Soda M, Pagel E, Meyer R C, Tõldsepp K, Nilsson A K, Brosché M, Kollist H, Uddling J, Andersson M X Genetic controls of short- and long-term stomatal CO2 responses in Arabidopsis thaliana. Ann. Bot. 126 (2020) 179-190.
Knoch D Growth-related systems genetics analyses and hybrid performance prediction in canola. (PhD Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät I Biowissenschaften (2020) 185 pp.
Knoch D, Abbadi A, Grandke F, Meyer R C, Samans B, Werner C R, Snowdon R J, Altmann T Strong temporal dynamics of QTL action on plant growth progression revealed through high-throughput phenotyping in canola. Plant Biotechnol. J. 18 (2020) 68-82.
Krieg L-M Molekulare Analyse eines QTL zur Stickstoffverwertung in Arabidopsis thaliana. (Bachelor Thesis) Bernburg, Hochschule Anhalt, Fachbereich Landwirtschaft, Ökotrophologie und Landschaftsentwicklung (2020) 65 pp.
Kuhlmann M, Meyer R C, Jia Z, Klose D, Krieg L-M, von Wirén N, Altmann T Epigenetic variation at a genomic locus affecting biomass accumulation under low nitrogen in Arabidopsis thaliana. Agronomy 10 (2020) 636.
Melandri G, AbdElgawad H, Riewe D, Hageman J A, Asard H, Beemster G T S, Kadam N, Jagadish K, Altmann T, Ruyter-Spira C, Bouwmeester H Biomarkers for grain yield stability in rice under drought stress. J. Exp. Bot. 71 (2020) 669–683.
Mikołajczak K, Ogrodowicz P, Ćwiek-Kupczyńska H, Weigelt-Fischer K, Mothukuri S R, Junker A, Altmann T, Krystkowiak K, Adamski T, Surma M, Kuczyńska A, Krajewski P Image phenotyping of spring barley (Hordeum vulgare L.) RIL population under drought: selection of traits and biological interpretation. Front. Plant Sci. 11 (2020) 743.
Wiebach J, Nagel M, Börner A, Altmann T, Riewe D Age-dependent loss of seed viability is associated with increased lipid oxidation and hydrolysis. Plant Cell Environ. 43 (2020) 303-314.
Woźniak N J, Kappel C, Marona C, Altschmied L, Neuffer B, Sicard A A similar genetic architecture underlies the convergent evolution of the selfing syndrome in Capsella. Plant Cell 32 (2020) 935-949.
Anacleto R, Badoni S, Parween S, Butardo V M, Jr., Misra G, Cuevas R P, Kuhlmann M, Trinidad T P, Mallillin A C, Acuin C, Bird A R, Morell M K, Sreenivasulu N Integrating a genome-wide association study with a large-scale transcriptome analysis to predict genetic regions influencing the glycaemic index and texture in rice. Plant Biotechnol. J. 17 (2019) 1261-1275.
Demidov D, Heckmann S, Weiss O, Rutten T, Tomaštíková E D, Kuhlmann M, Scholl P, Municio C M, Lermontova I, Houben A Deregulated phosphorylation of CENH3 at Ser65 affects the development of floral meristems in Arabidopsis thaliana. Front. Plant Sci. 10 (2019) 928.
Dodig D, Bozinovic S, Nikolic A, Zoric M, Vancetovic J, Ignjatovic-Micic D, Delic N, Weigelt-Fischer K, Junker A, Altmann T Image-derived traits related to mid-season growth performance of maize under nitrogen and water stress. Front. Plant Sci. 10 (2019) 814.
Ferguson J N, Meyer R C, Edwards K D, Humphry M, Brendel O, Bechtold U Accelerated flowering time reduces lifetime water use without penalizing reproductive performance in Arabidopsis. Plant Cell Environ. 42 (2019) 1847-1867.
Henke M, Junker A, Neumann K, Altmann T, Gladilin E Comparison of feature point detectors for multimodal image registration in plant phenotyping. PLoS One 14 (2019) e0221203.
Henke M, Junker A, Neumann K, Altmann T, Gladilin E Comparison and extension of three methods for automated registration of multimodal plant images. Plant Methods 15 (2019) 44.
Heuermann M C, Rosso M G, Mascher M, Brandt R, Tschiersch H, Altschmied L, Altmann T Combining next-generation sequencing and progeny testing for rapid identification of induced recessive and dominant mutations in maize M2 individuals. Plant J. 100 (2019) 851-862.
Jia Z, Giehl R F H, Meyer R C, Altmann T, von Wirén N Natural variation of BSK3 tunes brassinosteroid signaling to regulate root foraging under low nitrogen. Nat. Commun. 10 (2019) 2378.
Kuhlmann M DNA-Methylierung – das 5. Element. Biol. Unserer Zeit 49 (2019) 342-349.
Lück S, Kreszies T, Strickert M, Schweizer P, Kuhlmann M, Douchkov D siRNA-Finder (si-Fi) software for RNAi-target design and off-target prediction. Front. Plant Sci. 10 (2019) 1023.
Meyer R C, Gryczka C, Neitsch C, Müller M, Bräutigam A, Schlereth A, Schön H, Weigelt-Fischer K, Altmann T Genetic diversity for nitrogen use efficiency in Arabidopsis thaliana. Planta 250 (2019) 41–57.
Narisetti N, Henke M, Seiler C, Shi R, Junker A, Altmann T, Gladilin E Semi-automated Root Image Analysis (saRIA). Sci. Rep. 9 (2019) 19674.
Püffeld M, Seiler C, Kuhlmann M, Sreenivasulu N, Butardo V M Analysis of developing rice grain transcriptome using the agilent microarray platform. In: Sreenivasulu N (Ed.): Rice grain quality: methods and protocols. (Series: Methods in molecular biology, Vol. 1892) New York, NY: Humana Press (2019) 277-300. ISBN 978-1-4939-8912-6
Rizzo P, Altschmied L, Stark P, Rutten T, Guendel A, Scharfenberg S, Franke K, Baeumlein H, Wessjohann L, Koch M, Borisjuk L, Sharbel T F Discovery of key regulators of dark glands development and hypericin biosynthesis in St. John's wort (Hypericum perforatum). Plant Biotechnol. J. 17 (2019) 2299-2312.
Seiler C, Kuhlmann M Quantification of DNA methylation as biomarker for grain quality. In: Sreenivasulu N (Ed.): Rice grain quality: methods and protocols. (Series: Methods in molecular biology, Vol. 1892) New York, NY: Humana Press (2019) 301-310. ISBN 978-1-4939-8912-6
Surdonja K Influence of post-anthesis drought stress on germination and malting quality in barley. (PhD Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät I, Biowissenschaften (2019) 104 pp.
Tedeschi F, Rizzo P, Huong B, Czihal A, Rutten T, Altschmied L, Scharfenberg S, Grosse I, Becker C, Weigel D, Bäumlein H, Kuhlmann M EFFECTOR OF TRANSCRIPTION factors are novel plant-specific regulators associated with genomic DNA methylation in Arabidopsis. New Phytol. 221 (2019) 261-278.
Zhang Y, Ramming A, Heinke L, Altschmied L, Slotkin R K, Becker J D, Kappel C, Lenhard M The poly(A) polymerase PAPS1 interacts with the RNA-directed DNA methylation pathway in sporophyte and pollen development. Plant J. 99 (2019) 655-672.
Altmann S, Muino J M, Lortzing V, Brandt R, Himmelbach A, Altschmied L, Hilker M Transcriptomic basis for reinforcement of elm antiherbivore defence mediated by insect egg deposition. Mol. Ecol. 27 (2018) 4901-4915.
Casartelli A, Riewe D, Hubberten H M, Altmann T, Hoefgen R, Heuer S Exploring traditional aus-type rice for metabolites conferring drought tolerance. Rice 11 (2018) 9.
Chen D, Shi R, Pape J-M, Neumann K, Arend D, Graner A, Chen M, Klukas C Predicting plant biomass accumulation from image-derived parameters. GigaScience 7 (2018) 1-13.
Döll S, Kuhlmann M, Rutten T, Mette M F, Scharfenberg S, Petridis A, Berreth D C, Mock H-P Accumulation of the coumarin scopolin under abiotic stress conditions is mediated by the Arabidopsis thaliana THO/TREX complex. Plant J. 93 (2018) 431-444.
Grehl C, Kuhlmann M, Becker C, Glaser B, Grosse I How to design a whole-genome bisulfite sequencing experiment. Epigenomes 2 (2018) 21.
Hashemipetroudi S H, Nematzadeh G, Ahmadian G, Yamchi A, Kuhlmann M Assessment of DNA contamination in RNA samples based on ribosomal DNA. J. Vis. Exp. 131 (2018) e55451.
Henke M, Junker A, Neumann K, Altmann T, Gladilin E Automated alignment of multi-modal plant images using integrative phase correlation approach. Front. Plant Sci. 9 (2018) 1519.
Johnson J M, Thürich J, Petutschnig E K, Altschmied L, Meichsner D, Sherameti I, Dindas J, Mrozinska A, Paetz C, Scholz S S, Furch A C U, Lipka V, Hedrich R, Schneider B, Svatoš A, Oelmüller R A poly(A) ribonuclease controls the cellotriose-based interaction between Piriformospora indica and its host Arabidopsis. Plant Physiol. 176 (2018) 2496-2514.
Klose D Untersuchung der Stickstoffverwertung unterschiedlicher Arabidopsis-Akzessionen. (Bachelor Thesis) Mittweida, Hochschule Mittweida, University of Applied Sciences, Fakultät: Angewandte Computer- und Biowissenschaften (2018) 109 pp.
Kochevenko A, Jiang Y, Seiler C, Surdonja K, Kollers S, Reif J C, Korzun V, Graner A Identification of QTL hot spots for malting quality in two elite breeding lines with distinct tolerance to abiotic stress. BMC Plant Biol. 18 (2018) 106.
Meitzel T Signaling pathways in legume seed development: evidence for a crosstalk between trehalose 6-phosphate and auxin. (PhD Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät I Biowissenschaften (2018) 177 pp.
Pommerrenig B, Junker A, Abreu I, Bieber A, Fuge J, Willner E, Bienert M D, Altmann T, Bienert G P Identification of rapeseed (Brassica napus) cultivars with a high tolerance to boron-deficient conditions. Front. Plant Sci. 9 (2018) 1142.
Radchuk V, Tran V, Radchuk R, Diaz-Mendoza M, Weier D, Fuchs J, Riewe D, Hensel G, Kumlehn J, Munz E, Heinzel N, Rolletschek H, Martinez M, Borisjuk L Vacuolar processing enzyme 4 contributes to maternal control of grain size in barley by executing programmed cell death in the pericarp. New Phytol. 218 (2018) 1127-1142.
Shi R, Junker A, Seiler C, Altmann T Phenotyping roots in darkness: disturbance-free root imaging with near infrared illumination. Funct. Plant Biol. 45 (2018) 400-411.
Shi R, Melzer M, Zheng S, Benke A, Stich B, von Wirén N Iron retention in root hemicelluloses causes genotypic variability in the tolerance to iron deficiency-induced chlorosis in maize. Front. Plant Sci. 9 (2018) 557.
Wang H, Chen W, Eggert K, Charnikhova T, Bouwmeester H, Schweizer P, Hajirezaei M R, Seiler C, Sreenivasulu N, von Wirén N, Kuhlmann M Abscisic acid influences tillering by modulation of strigolactones in barley. J. Exp. Bot. 69 (2018) 3883-3898.
Blossei J Untersuchung zum Einfluss der Überexpression von ERI auf die Zunahme der frühen Biomasse. (Bachelor Thesis) Bremen, Hochschule Bremen, Internationaler Studiengang Technische und Angewandte Biologie, Fakultät 5 (2017) 42 pp.
Chen D Dissecting and modeling the phenotypic components of plant growth and drought responses based on high-throughput image analysis. (PhD Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät I Biowissenschaften (2017) 185 pp.
de Guzman M K, Parween S, Butardo V M, Alhambra C M, Anacleto R, Seiler C, Bird A R, Chow C P, Sreenivasulu N Investigating glycemic potential of rice by unraveling compositional variations in mature grain and starch mobilization patterns during seed germination. Sci. Rep. 7 (2017) 5854.
Galla G, Zenoni S, Avesani L, Altschmied L, Rizzo P, Sharbel T F, Barcaccia G Pistil transcriptome analysis to disclose genes and gene products related to Aposporous apomixis in Hypericum perforatum L. Front. Plant Sci. 8 (2017) 79.
Kloth K J, Busscher J, Wiegers G, Kruijer W, Buijs G, Meyer R C, Albrectsen B R, Bouwmeester H J, Dicke M, Jongsma M A SIEVE ELEMENT-LINING CHAPERONE 1 restricts aphid feeding on Arabidopsis during heat stress. Plant Cell 29 (2017) 2450-2464.
Knoch D, Riewe D, Meyer R C, Boudichevskaia A, Schmidt R, Altmann T Genetic dissection of metabolite variation in Arabidopsis seeds: evidence for mQTL hotspots and a master regulatory locus of seed metabolism. J. Exp. Bot. 68 (2017) 1655-1667.
Ma W, Gabriel T S, Martis M M, Gursinsky T, Schubert V, Vrana J, Dolezel J, Grundlach H, Altschmied L, Scholz U, Himmelbach A, Behrens S E, Banaei-Moghaddam A M, Houben A Rye B chromosomes encode a functional Argonaute-like protein with in vitro slicer activities similar to its A chromosome paralog. New Phytol. 213 (2017) 916-928.
Muraya M M, Chu J, Zhao Y, Junker A, Klukas C, Reif J C, Altmann T Genetic variation of growth dynamics in maize (Zea mays L.) revealed through automated non-invasive phenotyping. Plant J. 89 (2017) 366–380.
Patzold F Identifikation von QTL für Zwergrostresistenz (Puccinia hordei) in ausgewählten Familien der Gerste (Hordeum vulgare ssp. vulgare) Nested Association Mapping Population NAM HEB-25. (Master Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg (2017) 74 pp.
Radchuk V, Riewe D, Peukert M, Matros A, Strickert M, Radchuk R, Weier D, Steinbiß H-H, Sreenivasulu N, Weschke W, Weber H Down-regulated sucrose transporters HvSUT1, HvSUT2 affects sucrose homeostasis along its delivery path in barley grains. J. Exp. Bot. 68 (2017) 4595-4612.
Riewe D, Wiebach J, Altmann T Structure annotation and quantification of wheat seed oxidized lipids by high resolution LC-MS/MS. Plant Physiol. 175 (2017) 600-618.
Sandmann M, Talbert P, Demidov D, Kuhlmann M, Rutten T, Conrad U, Lermontova I Targeting of A. thaliana KNL2 to centromeres depends on the conserved CENPC-k motif in its C-terminus. Plant Cell 29 (2017) 144-155.
Schmidt R, Boudichevskaia A, Cao H X, He S, Meyer R C, Reif J C Extracting genotype information of Arabidopsis thaliana recombinant inbred lines from transcript profiles established with high-density oligonucleotide arrays. Plant Cell Rep. 36 (2017) 1871-1881.
Surdonja K, Eggert K, Hajirezaei M-R, Harshavardhan V, Seiler C, von Wirén N, Sreenivasulu N, Kuhlmann M Increase of DNA methylation at the HvCKX2.1 promoter by terminal drought stress in barley. Epigenomes 1 (2017) 9.
Tedeschi F, Rizzo P, Rutten T, Altschmied L, Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol. 213 (2017) 1909–1924.
Thirulogachandar V, Alqudah A M, Koppolu R, Rutten T, Graner A, Hensel G, Kumlehn J, Bräutigam A, Sreenivasulu N, Schnurbusch T, Kuhlmann M Leaf primordium size specifies leaf width and vein number among row-type classes in barley. Plant J. 91 (2017) 601-612.
Tikhenko N, Rutten T, Senula A, Rubtsova M, Keller E R J, Börner A The changes in the reproductive barrier between hexaploid wheat (Triticum aestivum L.) and rye (Secale cereale L.): different states lead to different fates. Planta 246 (2017) 377–388.
Tschiersch H, Junker A, Meyer R C, Altmann T Establishment of integrated protocols for automated high throughput kinetic chlorophyll fluorescence analyses. Plant Methods 13 (2017) 54.
Venkatasubbu T Dosage of duplicated and antifunctionalized homeobox proteins influences leaf and spikelet development in barley (Hordeum vulgare L.). (PhD Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät I - Biowissenschaften (2017) 165 pp.
Walch-Liu P, Meyer R C, Altmann T, Forde B G QTL analysis of the developmental response to L-glutamate in Arabidopsis roots and its genotype-by-environment interactions. J. Exp. Bot. 68 (2017) 2919-2931.
Wang H Genetic manipulation of the cross-talk between abscisic acid and strigolactones and their biosynthetic link during late tittelring in barley. (PhD Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät I Biowissenschaften (2017) 114 pp.
Arend D, Junker A, Scholz U, Schüler D, Wylie J, Lange M PGP repository: a plant phenomics and genomics data publication infrastructure. Database 2016 (2016) 1-10.
Arend D, Lange M, Pape J-M, Weigelt-Fischer K, Arana-Ceballos F, Mücke I, Klukas C, Altmann T, Scholz U, Junker A Quantitative monitoring of Arabidopsis thaliana growth and development using high-throughput plant phenotyping. Sci. Data 3 (2016) 160055.
Ćwiek-Kupczyńska H, Altmann T, Arend D, Arnaud E, Chen D, Cornut G, Fiorani F, Frohmberg W, Junker A, Klukas C, Lange M, Mazurek C, Nafissi A, Neveu P, van Oeveren J, Pommier C, Poorter H, Rocca-Serra P, Sansone S-A, Scholz U, van Schriek M, Seren Ü, Usadel B, Weise S, Kersey P, Krajewski P Measures for interoperability of phenotypic data: minimum information requirements and formatting. Plant Methods 12 (2016) 44.
Edlich-Muth C, Muraya M M, Altmann T, Selbig J Phenomic prediction of maize hybrids. Biosystems 146 (2016) 102-109.
Graeff M, Straub D, Eguen T, Dolde U, Rodrigues V, Brandt R, Wenkel S MicroProtein-mediated recruitment of CONSTANS into a TOPLESS trimeric complex represses flowering in Arabidopsis. PLoS Genet. 12 (2016) e1005959.
Hashemi S H, Nematzadeh G, Ahmadian G, Yamchi A, Kuhlmann M Identification and validation of Aeluropus littoralis reference genes for quantitative real-time PCR normalization. J. Biol. Res. (Thessalon.) 23 (2016) 18.
Hashemipetroudi S H, Nematzadeh G, Ahmadian G, Yamchi A, Kuhlmann M Expression analysis of salt stress related expressed sequence tags (ESTs) from Aeluropus littoralis by quantitative real-time PCR. Biosci. Biotech. Res. Comm. 9 (2016) 445-456.
Hertig C Characterization and interaction studies of two-component signaling components expressed in barley endosperm transfer cells. (Master Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät I, Institut für Biologie (2016) 72 pp.
Hosseini S A, Hajirezaei M-R, Seiler C, Sreenivasulu N, von Wiren N A potential role of flag leaf potassium in conferring tolerance to drought-Induced leaf senescence in barley. Front. Plant Sci. 7 (2016) 206.
Huu C N, Kappel C, Keller B, Sicard A, Takebayashi Y, Breuninger H, Nowak M D, Baurle I, Himmelbach A, Burkart M, Ebbing-Lohaus T, Sakakibara H, Altschmied L, Conti E, Lenhard M Presence versus absence of CYP734A50 underlies the style-length dimorphism in primroses. eLife 5 (2016) e17956.
Kumke K, Macas J, Fuchs J, Altschmied L, Kour J, Dhar M K, Houben A Plantago lagopus B chromosome is enriched in 5S rDNA-derived satellite DNA. Cytogenet. Genome Res. 148 (2016) 68-73.
Lootens P, De Swaef T, Roldán-Ruiz I, Altmann T Workshop “Phenotyping”. In: Roldán-Ruiz I, Baert J, Reheul D (Eds.): Breeding in a world of scarcity: proceedings of the 2015 meeting of the section “Forage crops and amenity grasses” of Eucarpia. Cham: Springer (2016) 301-302. ISBN 978-3-319-28930-4
Nawrot R, Barylski J, Lippmann R, Altschmied L, Mock H-P Combination of transcriptomic and proteomic approaches helps to unravel the protein composition of Chelidonium majus L. milky sap. Planta 244 (2016) 1055–1064.
Opitz N, Marcon C, Paschold A, Malik W A, Lithio A, Brandt R, Piepho H P, Nettleton D, Hochholdinger F Extensive tissue-specific transcriptomic plasticity in maize primary roots upon water deficit. J. Exp. Bot. 67 (2016) 1095-1107.
Revilla P, Rodríguez V M, Ordás A, Rincent R, Charcosset A, Giauffret C, Melchinger A E, Schön C-C, Bauer E, Altmann T, Brunel D, Moreno-González J, Campo L, Ouzunova M, Álvarez Á, Ruíz de Galarreta J I, Laborde J, Malvar R A Association mapping for cold tolerance in two large maize inbred panels. BMC Plant Biol. 16 (2016) 127.
Riewe D, Jeon H J, Lisec J, Heuermann M C, Schmeichel J, Seyfarth M, Meyer R C, Willmitzer L, Altmann T A naturally occurring promoter polymorphism of the Arabidopsis FUM2 gene causes expression variation and is associated with metabolic and growth traits. Plant J. 88 (2016) 826-838.
Soták M, Czeranková O, Klein D, Nigutová K, Altschmied L, Li L, Jose A, Wurtele E S, Čellárová E Differentially expressed genes in hypericin-containing Hypericum perforatum leaf tissues as revealed by de novo assembly of RNA-seq. Plant Mol. Biol. Rep. 34 (2016) 1027–1041.
Wiebach J Prädiktion der Keimfähigkeit von Weizen und Gerste durch metabole Signaturen. (Diploma Thesis) Berlin, Technische Universität Berlin, Institut für Biotechnologie (2016) 80 pp.
Yamunarani R, Ramegowda V, Govind G, Jalendrakumar H G, Udayakumar M, Shankar A G Effect of Zn application on its uptake, distribution and concentration of Fe and Cu in finger millet [Eleusine coracana (L.) Gaertn.]. J. Plant Nutr. 39 (2016) 569-580.