Autoren Titel
Albrecht S, Otto L-G Chamomile. In: Novak J, Blüthner W-D (Eds.): Medicinal, aromatic and stimulant plants. (Series: Handbook of plant breeding, Vol. 12) : Springer International Publishing (2020) accepted. ISBN 978-3-030-38791-4
Beukert U, Liu G, Thorwarth P, Boeven P H G, Longin C F H, Zhao Y, Ganal M, Serfling A, Ordon F, Reif J C The potential of hybrid breeding to enhance leaf rust and stripe rust resistance in wheat. Theor. Appl. Genet. 133 (2020) 2171-2181.
Boeven P H G, Zhao Y, Thorwarth P, Liu F, Maurer H P, Gils M, Schachschneider R, Schacht J, Ebmeyer E, Kazman E, Mirdita V, Dörnte J, Kontowski S, Horbach R, Cöster H, Holzapfel J, Jacobi A, Ramgraber L, Reinbrecht C, Starck N, Varenne P, Starke A, Schürmann F, Ganal M, Polley A, Hartung J, Beier S, Scholz U, Longin C F H, Reif J C, Jiang Y, Würschum T Negative dominance and dominance-by-dominance epistatic effects reduce grain-yield heterosis in wide crosses in wheat. Sci. Adv. 6 (2020) eaay4897.
Bog M, Sree K S, Fuchs J, Hoang P T N, Schubert I, Kuever J, Rabenstein A, Paolacci S, Jansen M A K, Appenroth K-J A taxonomic revision of Lemna sect. Uninerves (Lemnaceae). Taxon 69 (2020) 56-66.
Chu J, Zhao Y, Beier S, Schulthess A W, Stein N, Philipp N, Röder M S, Reif J C Suitability of single-nucleotide polymorphism arrays versus genotyping-by-sequencing for genebank genomics in wheat. Front. Plant Sci. 11 (2020) 42.
Esmaeili H, Karami A, Hadian J, Nejad Ebrahimi S, Otto L-G Genetic structure and variation in Iranian licorice (Glycyrrhiza glabra L.) populations based on morphological, phytochemical and simple sequence repeats markers. Ind. Crops Prod. 145 (2020) 112140.
Faehnrich B, Huber J, Wagner S, Franz C, Fraust B, Wehrle M, Novak J, Ruzicka J, Otto L-G Towards pollen sterility in German chamomile (Matricaria chamomilla L.) - conventional breeding approaches of cytoplasmic/genic male sterility and chemical emasculation. Plant Breed. (2020) accepted.
Gemmer M R, Richter C, Jiang Y, Schmutzer T, Raorane M L, Junker B, Pillen K, Maurer A Can metabolic prediction be an alternative to genomic prediction in barley? PLoS One 15 (2020) e0234052.
Li G, Dong Y, Zhao Y, Tian X, Würschum T, Xue J, Chen S, Reif J C, Xu S, Liu W Genome-wide prediction in a hybrid maize population adapted to Northwest China. Crop J. (2020) in press.
Li Y H, Li D, Jiao Y Q, Schnable J C, Li Y F, Li H H, Chen H Z, Hong H L, Zhang T, Liu B, Liu Z X, You Q B, Tian Y, Guo Y, Guan R X, Zhang L J, Chang R Z, Zhang Z, Reif J, Zhou X A, Schnable P S, Qiu L J Identification of loci controlling adaptation in Chinese soybean landraces via a combination of conventional and bioclimatic GWAS. Plant Biotechnol. J. 18 (2020) 389-401.
Liu F, Zhao Y, Beier S, Jiang Y, Thorwarth P, Longin C F H, Ganal M, Himmelbach A, Reif J C, Schulthess A W Exome association analysis sheds light onto leaf rust (Puccinia triticina) resistance genes currently used in wheat breeding (Triticum aestivum L.). Plant Biotechnol. J. 18 (2020) 1396-1408.
Longin F, Beck H, Gütler H, Heilig W, Kleinert M, Rapp M, Philipp N, Erban A, Brilhaus D, Mettler-Altmann T, Stich B Aroma and quality of breads baked from old and modern wheat varieties and their prediction from genomic and flour-based metabolite profiles. Food Res. Int. 129 (2020) 108748.
Nowicka A, Tokarz B, Zwyrtková J, Dvořák Tomaštíková E, Procházková K, Ercan U, Finke A, Rozhon W, Poppenberger B, Otmar M, Niezgodzki I, Krečmerová M, Schubert I, Pecinka A Comparative analysis of epigenetic inhibitors reveals different degrees of interference with transcriptional gene silencing and induction of DNA damage. Plant J. 102 (2020) 68-84.
Palfalvi G, Hackl T, Terhoeven N, Shibata T F, Nishiyama T, Ankenbrand M, Becker D, Förster F, Freund M, Iosip A, Kreuzer I, Saul F, Kamida C, Fukushima K, Shigenobu S, Tamada Y, Adamec L, Hoshi Y, Ueda K, Winkelmann T, Fuchs J, Schubert I, Schwacke R, Al-Rasheid K, Schultz J, Hasebe M, Hedrich R Genomes of the Venus flytrap and close relatives unveil the roots of plant carnivory. Curr. Biol. 30 (2020) 2312-2320.
Papoutsoglou E A, Faria D, Arend D, Arnaud E, Athanasiadis I N, Chaves I, Coppens F, Cornut G, Costa B V, Ćwiek-Kupczyńska H, Droesbeke B, Finkers R, Gruden K, Junker A, King G J, Krajewski P, Lange M, Laporte M-A, Michotey C, Oppermann M, Ostler R, Poorter H, Ramı́rez-Gonzalez R, Ramšak Ž, Reif J C, Rocca-Serra P, Sansone S-A, Scholz U, Tardieu F, Uauy C, Usadel B, Visser R G F, Weise S, Kersey P J, Miguel C M, Adam-Blondon A-F, Pommier C Enabling reusability of plant phenomic datasets with MIAPPE 1.1. New Phytol. 227 (2020) 260-273.
Pogoda M, Liu F, Douchkov D, Djamei A, Reif J C, Schweizer P, Schulthess A W Identification of novel genetic factors underlying the host-pathogen interaction between barley (Hordeum vulgare L.) and powdery mildew (Blumeria graminis f. sp. hordei). PLoS One 15 (2020) e0235565.
Schubert V, Neumann P, Marques A, Heckmann S, Macas J, Pedrosa-Harand A, Schubert I, Jang T-S, Houben A Super-resolution microscopy reveals diversity of plant centromere architecture. Int. J. Mol. Sci. 21 (2020) 3488.
Sommer L, Spiller M, Stiewe G, Pillen K, Reif J C, Schulthess A W Proof of concept to unmask the breeding value of genetic resources of barley (Hordeum vulgare) with a hybrid strategy. Plant Breed. 139 (2020) 536-549.
Słomińska-Durdasiak K M, Kollers S, Korzun V, Nowara D, Schweizer P, Djamei A, Reif J C Association mapping of wheat Fusarium head blight resistance-related regions using a candidate-gene approach and their verification in a biparental population. Theor. Appl. Genet. 133 (2020) 341–351.
Woytowich M Analysis of the outcrossing ratio of German Chamomile (Matricaria recutita L.) using SSR-markers. (Master Thesis) Saskatoon, SK, Canada, University of Saskatchewan, Department of Plant Sciences (2020) 81 pp.
Alomari D Z, Eggert K, von Wirén N, Polley A, Plieske J, Ganal M W, Liu F, Pillen K, Röder M S Whole-genome association mapping and genomic prediction for iron concentration in wheat grains. Int. J. Mol. Sci. 20 (2019) 76.
Dhanagond S, Liu G, Zhao Y, Chen D, Grieco M, Reif J, Kilian B, Graner A, Neumann K Non-invasive phenotyping reveals genomic regions involved in pre-anthesis drought tolerance and recovery in spring barley. Front. Plant Sci. 10 (2019) 1307.
Faehnrich B, Otto L-G, Franz C, Mešić E, Cosendai A-C, Dobeš C Auxin application in interploidy crosses and genome stability: across-generation investigations on German chamomile (Matricaria recutita [L.] Rauschert) of various origins. Euphytica 215 (2019) 16.
Finke A, Mandáková T, Nawaz K, Vu G T H, Novák P, Macas J, Lysak M A, Pecinka A Genome invasion by a hypomethylated satellite repeat in Australian crucifer Ballantinia antipoda. Plant J. 99 (2019) 1066-1079.
Gan T Untersuchungen zur Vitalität und Lagerfähigkeit von Kamillepollen (Matricaria recutita L.). (Bachelor Thesis) Hannover, Leibniz Universität Hannover, Institut für Gartenbauliche Produktionssysteme Abteilung Gehölz- und Vermehrungsphysiologie (2019) 32 pp.
Hoang P T N, Schubert I Combination of various sequencing, assembly and mapping approaches, creating a reliable genome assembly for emerging aquatic crops. GIT Laboratory J. 23 (2019) 14-17.
Hoang P T N, Schubert V, Meister A, Fuchs J, Schubert I Variation in genome size, cell and nucleus volume, chromosome number and rDNA loci among duckweeds. Sci. Rep. 9 (2019) 3234.
Hoang T N P Comparative cytology and cytogenomics for representative species of the five duckweed genera. (PhD Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät III Agrar- und Ernährungswissenschaften, Geowissenschaften und Informatik (2019) 99 pp.
Houben A, Schubert I Bericht zur Internationalen Konferenz Plant genome stability and change" (03.-06-06.2018 in Gatersleben)." Leopoldina-Jahrbuch 2018 (2019) 311-314.
Liu F, Schmidt R H, Reif J C, Jiang Y Selecting closely-linked SNPs based on local epistatic effects for haplotype construction improves power of association mapping. G3-Genes Genom. Genet. 9 (2019) 4115-4126.
Mascher M, Schreiber M, Scholz U, Graner A, Reif J C, Stein N Genebank genomics bridges the gap between the conservation of crop diversity and plant breeding. Nat. Genet. 51 (2019) 1076-1081.
Mérida-Garcia R, Liu G, He S, Gonzalez-Dugo V, Dorado G, Gálvez S, Solís I, Zarco-Tejada P J, Reif J C, Hernandez P Genetic dissection of agronomic and quality traits based on association mapping and genomic selection approaches in durum wheat grown in Southern Spain. PLoS One 14 (2019) e0211718.
Milner S G, Jost M, Taketa S, Mazón E R, Himmelbach A, Oppermann M, Weise S, Knüpffer H, Basterrechea M, König P, Schüler D, Sharma R, Pasam R K, Rutten T, Guo G, Xu D, Zhang J, Herren G, Müller T, Krattinger S G, Keller B, Jiang Y, González M Y, Zhao Y, Habekuß A, Färber S, Ordon F, Lange M, Börner A, Graner A, Reif J C, Scholz U, Mascher M, Stein N Genebank genomics highlights the diversity of a global barley collection. Nat. Genet. 51 (2019) 319-326.
Muqaddasi Q H, Reif J C, Röder M S, Basnet B R, Dreisigacker S Genetic mapping reveals large-effect QTL for anther extrusion in CIMMYT spring wheat. Agronomy 9 (2019) 407.
Muqaddasi Q H, Zhao Y, Rodemann B, Plieske J, Ganal M W, Röder M S Genome-wide association mapping and prediction of adult stage Septoria tritici blotch infection in European winter wheat via high-density marker arrays. Plant Genome 12 (2019) 180029.
Philipp N, Weise S, Oppermann M, Börner A, Keilwagen J, Kilian B, Arend D, Zhao Y, Graner A, Reif J C, Schulthess A W Historical phenotypic data from seven decades of seed regeneration in a wheat ex situ collection. Sci. Data 6 (2019) 137.
Rembe M, Zhao Y, Jiang Y, Reif J C Reciprocal recurrent genomic selection: an attractive tool to leverage hybrid wheat breeding. Theor. Appl. Genet. 132 (2019) 687–698.
Takenaka S, Weschke W, Brückner B, Murata M, Endo T R Chromosome arm locations of barley sucrose transporter gene in transgenic winter wheat lines. Front. Plant Sci. 10 (2019) 548.
Thorwarth P, Liu G, Ebmeyer E, Schacht J, Schachschneider R, Kazman E, Reif J C, Würschum T, Longin C F H Dissecting the genetics underlying the relationship between protein content and grain yield in a large hybrid wheat population. Theor. Appl. Genet. 132 (2019) 489–500.
Tian Y, Liu B, Shi X, Reif J C, Guan R, Li Y-h, Qiu L-j Deep genotyping of the gene GmSNAP facilitates pyramiding resistance to cyst nematode in soybean. Crop J. 7 (2019) 677-684.
Ávila Robledillo L, Koblížková A, Novák P, Böttinger K, Vrbová I, Neumann P, Schubert I, Macas J Satellite DNA in Vicia faba is characterized by remarkable diversity in its sequence composition, association with centromeres, and replication timing. Sci. Rep. 8 (2018) 5838.
Börner A, Akram S, Alomari D, Cardelli M, Castro A, Dietz J, Eggert K, Fauzia, Gerard G, Giménez D, Golik S, Lohwasser U, Lori G, Malbrán I, Maryam, Muqaddasi Q, Nagel M, Nezhad K, Pardi M, Perelló A, Rehman Arif M, Röder M, Saldúa L, Schierenbeck M, Simón M, Tarawneh R, Ungaro Korn S, Uranga J, von Wirén N, Yanniccari M, Zhao Y Items from Germany. Ann. Wheat Newsl. 64 (2018) 13-20.
Döll S, Kuhlmann M, Rutten T, Mette M F, Scharfenberg S, Petridis A, Berreth D C, Mock H-P Accumulation of the coumarin scopolin under abiotic stress conditions is mediated by the Arabidopsis thaliana THO/TREX complex. Plant J. 93 (2018) 431-444.
González M Y, Philipp N, Schulthess A W, Weise S, Zhao Y, Börner A, Oppermann M, Graner A, Reif J C Unlocking historical phenotypic data from an ex situ collection to enhance the informed utilization of genetic resources of barley (Hordeum sp.). Theor. Appl. Genet. 131 (2018) 2009-2019.
González M Y, Weise S, Zhao Y, Philipp N, Arend D, Börner A, Oppermann M, Graner A, Reif J C, Schulthess A W Unbalanced historical phenotypic data from seed regeneration of a barley ex situ collection. Sci. Data 5 (2018) 180278.
Guo Z, Liu G, Röder M S, Reif J C, Ganal M W, Schnurbusch T Genome-wide association analyses of plant growth traits during the stem elongation phase in wheat. Plant Biotechnol. J. 16 (2018) 2042-2052.
Guo Z, Zhao Y, Röder M S, Reif J C, Ganal M W, Chen D, Schnurbusch T Manipulation and prediction of spike morphology traits for the improvement of grain yield in wheat. Sci. Rep. 8 (2018) 14435.
Henneke A Quantitative genetic analysis of metabolite profiles in wheat inbred lines and hybrids. (Master Thesis) Hannover, Leibniz Universität Hannover (2018) 66 pp.
Hoang P N T, Michael T P, Gilbert S, Chu P, Motley T S, Appenroth K J, Schubert I, Lam E Generating a high-confidence reference genome map of the Greater Duckweed by integration of cytogenomic, optical mapping and Oxford Nanopore technologies. Plant J. 96 (2018) 670-684.
Jiang Y, Schmidt R H, Reif J C Haplotype-based genome-wide prediction models exploit local epistatic interactions among markers. G3 Genes Genom. Genet. 8 (2018) 1687-1699.
Kochevenko A, Jiang Y, Seiler C, Surdonja K, Kollers S, Reif J C, Korzun V, Graner A Identification of QTL hot spots for malting quality in two elite breeding lines with distinct tolerance to abiotic stress. BMC Plant Biol. 18 (2018) 106.
Li Y H, Reif J C, Hong H L, Li H H, Liu Z X, Ma Y S, Li J, Tian Y, Li Y F, Li W B, Qiu L J Genome-wide association mapping of QTL underlying seed oil and protein contents of a diverse panel of soybean accessions. Plant Sci. 266 (2018) 95-101.
Liu G Genome-wide prediction of hybrid performance and yield stability analysis in winter wheat. (PhD Thesis, kumulativ) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät III Agrar- und Ernährungswissenschaften, Geowissenschaften und Informatik (2018) 48 pp.
Otto L-G, Brassac J, Mondal P, Sonnenschein M, Plocharski B, Junghanns W, Preiss S, Degenhardt J, Lazzaro M, Bocchini M, Albertini E, Plescher A, Fraust B, He S, Reif J, Sharbel T Next generation breeding tools for chamomile: Evaluating genetic diversity, ploidy variation, and identifying marker-trait associations. In: Marthe F, Blum H, Heuberger H, Pude R (Eds.): 8. Tagung für Arznei- und Gewürzpflanzenforschung Vielfalt im Dialog mit Mensch und Natur", 10. – 13. September 2018, Bonn." (Series: Julius-Kühn-Archiv, 460) Quedlinburg: Julius Kühn-Institut, Bundesforschungsinstitut für Kulturpflanzen (2018) 67-71.
Pfündel E E, Latouche G, Meister A, Cerovic Z G Linking chloroplast relocation to different responses of photosynthesis to blue and red radiation in low and high light-acclimated leaves of Arabidopsis thaliana (L.). Photosynth. Res. 137 (2018) 105-128.
Philipp N, Weichert H, Bohra U, Weschke W, Schulthess A W, Weber H Grain number and grain yield distribution along the spike remain stable despite breeding for high yield in winter wheat. PLoS One 13 (2018) e0205452.
Philipp N, Weise S, Oppermann M, Börner A, Graner A, Keilwagen J, Kilian B, Zhao Y S, Reif J C, Schulthess A W Leveraging the use of historical data gathered during seed regeneration of an ex situ genebank collection of wheat. Front. Plant Sci. 9 (2018) 609.
Schubert I What is behind centromere repositioning"?" Chromosoma 127 (2018) 229-234.
Schulthess A W Evaluating the benefits and limitations of multiple-trait breeding assisted by genomics in cereal crops. (PhD Thesis, kumulativ) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Institut für Agrar- und Ernährungswissenschaften der Naturwissenschaftlichen Fakultät III (2018) 48 pp.
Schulthess A W, Zhao Y, Longin C F H, Reif J C Advantages and limitations of multiple-trait genomic prediction for Fusarium head blight severity in hybrid wheat (Triticum aestivum L.). Theor. Appl. Genet. 131 (2018) 685–701.
Thorwarth P, Piepho H P, Zhao Y S, Ebmeyer E, Schacht J, Schachschneider R, Kazman E, Reif J C, Würschum T, Longin C F H Higher grain yield and higher grain protein deviation underline the potential of hybrid wheat for a sustainable agriculture. Plant Breed. 137 (2018) 326-337.
Würschum T, Liu G, Boeven P H G, Longin C F H, Mirdita V, Kazman E, Zhao Y, Reif J C Exploiting the Rht portfolio for hybrid wheat breeding. Theor. Appl. Genet. 131 (2018) 1433–1442.
Baroux C, Pecinka A, Fuchs J, Kreth G, Schubert I, Grossniklaus U Non-random chromosome arrangement in triploid endosperm nuclei. Chromosoma 126 (2017) 115-124.
Beukert U Genome-based identification of heterotic patterns in rice. (Master Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät III, Institut für Agrar- und Ernährungswissenschaften (2017) 31 pp.
Beukert U, Li Z, Liu G, Zhao Y, Ramachandra N, Mirdita V, Pita F, Pillen K, Reif J C Genome-based identification of heterotic patterns in rice. Rice 10 (2017) 22.
He S Potentials and limits of genomics-assisted wheat breeding. (PhD Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Institut für Agrar- und Ernährungswissenschaften der Naturwissenschaftlichen Fakultät III (2017) 43 pp.
He S, Reif J C, Korzun V, Bothe R, Ebmeyer E, Jiang Y Genome-wide mapping and prediction suggests presence of local epistasis in a vast elite winter wheat populations adapted to Central Europe. Theor. Appl. Genet. 130 (2017) 635–647.
Hoang P T N, Schubert I Reconstruction of chromosome rearrangements between the two most ancestral duckweed species Spirodela polyrhiza and S. intermedia. Chromosoma 126 (2017) 729-739.
Jiang Y, Schmidt R H, Zhao Y, Reif J C A quantitative genetic framework highlights the role of epistatic effects for grain-yield heterosis in bread wheat. Nat. Genet. 49 (2017) 1741-1746.
Jiang Y, Schulthess A W, Rodemann B, Ling J, Plieske J, Kollers S, Ebmeyer E, Korzun V, Argillier O, Stiewe G, Ganal M W, Röder M S, Reif J C Validating the prediction accuracies of marker-assisted and genomic selection of Fusarium head blight resistance in wheat using an independent sample. Theor. Appl. Genet. 130 (2017) 471-482.
Li Y-h, Reif J C, Hong H-l, Li H-h, Liu Z-x, Ma Y-s, Li J, Tian Y, Li Y-f, Li W-b, Qiu L-j Genome-wide association mapping of QTL underlying seed oil and protein contents of a diverse panel of soybean accessions. Plant Sci. 266 (2017) 95-101.
Li Z, Philipp N, Spiller M, Stiewe G, Reif J C, Zhao Y Genome-wide prediction of the performance of three-way hybrids in barley. Plant Genome 10 (2017)
Liu G, Zhao Y, Mirdita V, Reif J C Efficient strategies to assess yield stability in winter wheat. Theor. Appl. Genet. 130 (2017) 1587-1599.
Liu P, Zhao Y, Liu G, Wang M, Hu D, Hu J, Meng J, Reif J C, Zou J Hybrid performance of an immortalized F2 rapeseed population is driven by additive, dominance, and epistatic effects. Front. Plant Sci. 8 (2017) 815.
Matros A, Liu G, Hartmann A, Jiang Y, Zhao Y, Wang H, Ebmeyer E, Korzun V, Schachschneider R, Kazman E, Schacht J, Longin F, Reif J C, Mock H-P Genome-metabolite associations revealed low heritability, high genetic complexity, and causal relations for leaf metabolites in winter wheat (Triticum aestivum). J. Exp. Bot. 68 (2017) 415-428.
Miedaner T, Schulthess A W, Gowda M, Reif J C, Longin C F H High accuracy of predicting hybrid performance of Fusarium head blight resistance by mid-parent values in wheat. Theor. Appl. Genet. 130 (2017) 461-470.
Milker S Untersuchung von männlicher Sterilität und Selbstinkompatibilität bei Matricaria chamomilla L. zur Bestäubungslenkung. (Bachelor Thesis) Jena, Ernst-Abbe-Hochschule Jena, Fachbereich Medizintechnik und Biotechnologie, Studiengang Biotechnologie (2017) 56 pp.
Muqaddasi Q H, Reif J C, Li Z, Basnet B R, Dreisigacker S, Röder M S Genome-wide association mapping and genome-wide prediction of anther extrusion in CIMMYT spring wheat. Euphytica 213 (2017) 73.
Muraya M M, Chu J, Zhao Y, Junker A, Klukas C, Reif J C, Altmann T Genetic variation of growth dynamics in maize (Zea mays L.) revealed through automated non-invasive phenotyping. Plant J. 89 (2017) 366–380.
Neumann K, Zhao Y, Chu J, Keilwagen J, Reif J C, Kilian B, Graner A Genetic architecture and temporal patterns of biomass accumulation in spring barley revealed by image analysis. BMC Plant Biol. 17 (2017) 137.
Otto L-G, Mondal P, Brassac J, Preiss S, Degenhardt J, He S, Reif J C, Sharbel T F Use of genotyping-by-sequencing to determine the genetic structure in the medicinal plant chamomile, and to identify flowering time and alpha-bisabolol associated SNP-loci by genome-wide association mapping. BMC Genomics 18 (2017) 599.
Rembe M Genome-wide association mapping and genome-wide prediction of anther extrusion in a Nested Association Mapping (NAM) population of wild x cultivated barley. (Master Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät III, Institut für Agrar- und Ernährungswissenschaften (2017) 60 pp.
Sandmann M Functional characterization of AtKNL2 reveals the path for its centromere localization and its impact on the centromere environment. (PhD Thesis, kumulativ) Jena, Friedrich-Schiller-Universität Jena, Biologisch-Pharmazeutische Fakultät (2017) 165? pp.
Sandmann M, Lermontova I Kinetochors and centromeres, the structural basis for reproduction. Endocytobiosis Cell Res. 28 (2017) 38-49.
Sandmann M, Talbert P, Demidov D, Kuhlmann M, Rutten T, Conrad U, Lermontova I Targeting of A. thaliana KNL2 to centromeres depends on the conserved CENPC-k motif in its C-terminus. Plant Cell 29 (2017) 144-155.
Schmidt R, Boudichevskaia A, Cao H X, He S, Meyer R C, Reif J C Extracting genotype information of Arabidopsis thaliana recombinant inbred lines from transcript profiles established with high-density oligonucleotide arrays. Plant Cell Rep. 36 (2017) 1871-1881.
Schubert I Some past developments and open questions in understanding the biology of nucleus. The Nucleus 60 (2017) 247-249.
Schulthess A W, Reif J C, Ling J, Plieske J, Kollers S, Ebmeyer E, Korzun V, Argillier O, Stiewe G, Ganal M W, Röder M S, Jiang Y The roles of pleiotropy and close linkage as revealed by association mapping of yield and correlated traits of wheat (Triticum aestivum L.). J. Exp. Bot. 68 (2017) 4089-4101.
Schulthess A W, Zhao Y, Reif J C Genomic selection in hybrid breeding. In: Varshney R K, Roorkiwal M, Sorrells M E (Eds.): Genomic selection for crop improvement: new molecular breeding strategies for crop improvement. Cham: Springer (2017) 149-183. ISBN 978-3-319-63170-7
Tran T D, Šimková H, Schmidt R, Doležel J, Schubert I, Fuchs J Chromosome identification for the carnivorous plant Genlisea margaretae. Chromosoma 126 (2017) 389–397.
Varshney R K, Shi C, Thudi M, Mariac C, Wallace J, Qi P, Zhang H, Zhao Y, Wang X, Rathore A, Srivastava R K, Chitikineni A, Fan G, Bajaj P, Punnuri S, Gupta S K, Wang H, Jiang Y, Couderc M, Katta M A V S K, Paudel D R, Mungra K D, Chen W, Harris-Shultz K R, Garg V, Desai N, Doddamani D, Kane N A, Conner J A, Ghatak A, Chaturvedi P, Subramaniam S, Yadav O P, Berthouly-Salazar C, Hamidou F, Wang J, Liang X, Clotault J, Upadhyaya H D, Cubry P, Rhone B, Gueye M C, Sunkar R, Dupuy C, Sparvoli F, Cheng S, Mahala R S, Singh B, Yadav R S, Lyons E, Datta S K, Hash C T, Devos K M, Buckler E, Bennetzen J L, Paterson A H, Ozias-Akins P, Grando S, Wang J, Mohapatra T, Weckwerth W, Reif J C, Liu X, Vigouroux Y, Xu X Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nat. Biotechnol. 35 (2017) 969–976.
Vu G T H, Cao H X, Fauser F, Reiss B, Puchta H, Schubert I Endogenous sequence patterns predispose the repair modes of CRISPR/Cas9-induced DNA double strand breaks in Arabidopsis thaliana. Plant J. 92 (2017) 57-67.
Vu G T H, Cao H X, Reiss B, Schubert I Deletion-bias in DNA double-strand break repair differentially contributes to plant genome shrinkage. New Phytol. 214 (2017) 1712–1721.
Wang W, Cao X H, Miclăuș M, Xiong W, Xu J-H The promise of agriculture genomics. Int. J. Genomics 2017 (2017) Art. ID 9743749.
Beuchel C F Potential and limits of marker-assisted selection and genome-wide prediction for powdery mildew and tan spot resistance in a large European elite winter wheat population. (Master Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät III, Institut für Agrar- und Ernährungswissenschaften (2016) 36 pp.
Campos K M, Royo C, Schulthess A, Villegas D, Matus I, Ammar K, Schwember A R Association of phytoene synthase Psy1-A1 and Psy1-B1 allelic variants with semolina yellowness in durum wheat (Triticum turgidum L. var. durum). Euphytica 207 (2016) 109-117.
Cao H X, Vu G T H, Wang W, Appenroth K J, Messing J, Schubert I The map-based genome sequence of Spirodela polyrhiza aligned with its chromosomes, a reference for karyotype evolution. New Phytol. 209 (2016) 354-363.
Cao H X, Wang W, Le H T T, Vu G T H The power of CRISPR-Cas9-induced genome editing to speed up plant breeding. Int. J. Genomics 2016 (2016) Article ID 5078796.
Chen W, Kastner C, Nowara D, Oliveira-Garcia E, Rutten T, Zhao Y, Deising H B, Kumlehn J, Schweizer P Host-induced silencing of Fusarium culmorum genes protects wheat from infection. J. Exp. Bot. 67 (2016) 4979-4991.
Fransz P, Linc G, Lee C R, Aflitos S A, Lasky J R, Toomajian C, Ali H, Peters J, van Dam P, Ji X, Kuzak M, Gerats T, Schubert I, Schneeberger K, Colot V, Martienssen R, Koornneef M, Nordborg M, Juenger T E, de Jong H, Schranz M E Molecular, genetic and evolutionary analysis of a paracentric inversion in Arabidopsis thaliana. Plant J. 88 (2016) 159-178.
He S, Schulthess A W, Mirdita V, Zhao Y, Korzun V, Bothe R, Ebmeyer E, Reif J C, Jiang Y Genomic selection in a commercial winter wheat population. Theor. Appl. Genet. 129 (2016) 641-651.
Lermontova I, Fajkus J, Schmit A C, Schubert I (Eds.) Front. Plant Sci., Special Research Topic “Centromere and telomere biology of Plants” Vol. 7. (2016) pp.
Li Y-h, Shi X-h, Li H-h, Reif J C, Wang J-j, Liu Z-x, He S, Yu B-s, Qiu L-j Dissecting the genetic basis of resistance to soybean cyst nematode combining linkage and linkage disequilibrium mapping. Plant Genome 9 (2016)
Liu G, Zhao Y, Gowda M, Longin C F, Reif J C, Mette M F Predicting hybrid performances for quality traits through genomic-assisted approaches in Central European wheat. PLoS One 11 (2016) e0158635.
Liu W, Leiser W L, Reif J C, Tucker M R, Losert D, Weissmann S, Hahn V, Maurer H P, Würschum T Multiple-line cross QTL mapping for grain yield and thousand kernel weight in triticale. Plant Breed. 135 (2016) 567–573.
Ma Y, Reif J C, Jiang Y, Wen Z, Wang D, Liu Z, Guo Y, Wei S, Wang S, Yang C, Wang H, Yang C, Lu W, Xu R, Zhou R, Wang R, Sun Z, Chen H, Zhang W, Wu J, Hu G, Liu C, Luan X, Fu Y, Guo T, Han T, Zhang M, Sun B, Zhang L, Chen W, Wu C, Sun S, Yuan B, Zhou X, Han D, Yan H, Li W, Qiu L Potential of marker selection to increase prediction accuracy of genomic selection in soybean (Glycine max L.). Mol. Breed. 36 (2016) 113.
Philipp N, Liu G, Zhao Y, He S, Spiller M, Stiewe G, Pillen K, Reif J C, Li Z Genomic prediction of barley hybrid performance. Plant Genome 9 (2016)
Sandmann M, Fuchs J, Lermontova I Immunolabeling of nuclei/chromosomes in Arabidopsis thaliana. In: Caillaud M-C (Ed.): Plant cell division: methods and protocols. (Series: Methods in molecular biology, Vol. 1370) New York [u.a.]: Humana Press (2016) 127-135. ISBN 978-1-4939-3141-5
Schubert I We have an inflation of review papers – for what are reviews good? Front. Plant Sci. 7 (2016) 88.
Schubert I, Vu G T H Genome stability and evolution: attempting a holistic view. Trends Plant Sci. 21 (2016) 749-757.
Schulthess A W, Wang Y, Miedaner T, Wilde P, Reif J C, Zhao Y Multiple-trait- and selection indices-genomic predictions for grain yield and protein content in rye for feeding purposes. Theor. Appl. Genet. 129 (2016) 273-287.
Vargas V H, Schulthess A, Royo C, Matus I, Schwember A R Transcripts levels of Phytoene synthase 1 (Psy-1) are associated to semolina yellowness variation in durum wheat (Triticum turgidum L. ssp. durum). J. Cer. Sci. 68 (2016) 155-163.
Wang Y Genome-wide prediction of testcross performance and phenotypic stability for important agronomic and quality traits in elite hybrid rye (Secale cereale L.). (PhD Thesis, kumulativ) Stuttgart, Landessaatzuchtanstalt der Universität Hohenheim (2016) 35 pp.
Watanabe K, Breier U, Hensel G, Kumlehn J, Schubert I, Reiss B Stable gene replacement in barley by targeted double-strand break induction. J. Exp. Bot. 67 (2016) 1433-1445.
Weimer A K, Demidov D, Lermontova I, Beeckman T, Van Damme D Aurora kinases throughout plant development. Trends Plant Sci. 21 (2016) 69-79.
Zou J, Zhao Y, Liu P, Shi L, Wang X, Wang M, Meng J, Reif J C Seed quality traits can be predicted with high accuracy in Brassica napus using genomic data. PLoS One 11 (2016) e0166624.

Publikationen Jochen C. Reif


Alheit, K.V., H.P. Maurer, J.C. Reif, M.R. Tucker, V. Hahn, E.A. Weissmann, and T. Würschum. 2012. Genome-wide evaluation of genetic diversity and linkage disequilibrium in winter and spring triticale (x Triticosecale Wittmack). BMC Genomics 13:235.

Cai, H., F. Chen1, G. Mi, F. Zhang, H.P. Maurer, W. Liu, J.C. Reif, and L. Yuan. 2012. Mapping QTLs for root system architecture of maize in the field at different developmental stages. Theoretical and Applied Genetics 125:1313-1324.

Gowda, M., C.F.H. Longin, V. Lein, and J.C. Reif. 2012. Relevance of specific versus general combining ability in wheat (Triticum aestivum L.). Crop Science 52:2494-2500.

Gowda, M., Y. Zhao, H.P. Maurer, E.A. Weissmann, T. Würschum, and J.C. Reif. 2012. Best linear unbiased prediction of triticale hybrid performance. Euphytica DOI 10.1007/s10681-012-0784-z.

Hübner, M., P. Wilde, B. Schmiedchen, P. Dopierala, M. Gowda, and J.C. Reif, T. Miedaner. 2012. Hybrid rye performance under natural drought stress in Europe. Theoretical and Applied Genetics DOI 10.1007/s00122-012-1994-4.

Liu, W., J.C. Reif, N. Ranc, G. D. Porta, and T. Würschum. 2012. Comparison of biometrical approaches for QTL detection in multiple segregating families. Theoretical and Applied Genetics 125:987-998.

Longin, CFH, J. Mühleisen, H.P. Maurer, H. Zhang, M. Gowda, and J.C. Reif. 2012. Hybrid breeding in autogamous cereals. Theoretical and Applied Genetics 125:1087-1096. 

Miedaner, T., M. Hübner, V. Korzun, B. Schmiedchen, E. Bauer, G. Haseneyer, P. Wilde, and J.C. Reif. 2012. Genetic architecture of complex agronomic traits in rye. BMC Genomics 13:706. 


Reif, J.C., V. Hahn, and A.E. Melchinger. 2012. Genetic basis of heterosis and prediction of hybrid performance. HELIA 35, Nr. 57, 1-8.


Reif, J.C., Y. Zhao, T. Würschum, M. Gowda, and V. Hahn. 2012. Genomic prediction of sunflower hybrid performance. Plant Breeding. DOI:10.1111/pbr.12007.


Schwegler, D.D., W. Liu, M. Gowda, T. Würschum, B. Schulz, and J.C. Reif. 2012. Multiple-line cross quantitative trait locus mapping in sugar beet (Beta vulgaris L.). Molecular Breeding DOI 10.1007/s11032-012-9788-6.

Steinhoff, J., W. Liu, H.P. Maurer, T. Würschum, C.F.H. Longin, N. Ranc, and J.C. Reif. 2012. Exploitation of elite maize (Zea mays L.) germplasm across maturity zones. Crop Science 52:1534-1542.

Steinhoff, J., W. Liu, J.C. Reif, G. D. Porta, N. Ranc, and T. Würschum. 2012. Genetic architecture of flowering time in elite maize. Theoretical and Applied Genetics 125:1539-1551.

Talas, F., T. Würschum, J.C. Reif, H.K. Parzies, and T. Miedaner. 2012. Association of single nucleotide polymorphic sites in candidate genes with aggressiveness and deoxynivalenol production in Fusarium graminearum causing wheat head blight. BMC Genetics 13:14.

Würschum, T., W. Liu, M. Gowda, H.P. Maurer, H.P. Piepho, S. Fischer, A. Schechert, J.C. Reif. 2012. Comparison of statistical models for joint linkage association mapping in sugar beet. Heredity 108:332-340.

Würschum, T., W. Liu, H.P. Maurer, S. Abel, and J.C. Reif. 2012. Dissecting the genetic architecture of agronomic traits in multiple segregating populations in rapeseed (Brassica napus L.). Theoretical and Applied Genetics 124:153-161.

Würschum, T., H.P. Maurer, F. Dreyer, and J.C. Reif. 2012. Effect of inter- and intragenic epistasis on the heritability of complex traits. Theoretical and Applied Genetics DOI 10.1007/s00122-012-1991-7.

Würschum, T., J.C. Reif, H.P. Maurer, and M. Tucker. 2012. Improved efficiency of doubled haploid generation in hexaploid triticale by in vitro chromosome doubling. BMC Plant Biology BMC Plant Biology 2012, 12:109.

Zhao, Y., M. Gowda, W. Liu, T. Würschum, H.P. Maurer, C.F.H. Longin, N. Ranc, H. P. Piepho, and J.C. Reif. 2012. Choice of shrinkage parameter and prediction of genomic breeding values in elite maize breeding populations. Plant Breeding DOI: 10.1111/pbr.12008.

Zhao, Y., M. Gowda, W. Liu, T. Würschum, H.P. Maurer, C.F.H. Longin, N. Ranc, and J.C. Reif. 2012. Accuracy of genomic selection in European maize elite breeding populations. Theoretical and Applied Genetics 124:769-776.

Zhao, Y., M. Gowda, C.F.H. Longin, T. Würschum, N. Ranc, and J.C. Reif. 2012. Impact of selective genotyping in the training population on accuracy and bias of genomic selection. Theoretical and Applied Genetics 125:707-713.


Alheit, K.V., J.C. Reif, H.P. Maurer, V. Hahn, E.A. Weissmann, T. Miedaner, and Tobias Würschum. 2011. A high-density DArT marker consensus genetic linkage map enables detection of segregation distortion loci in triticale (x Triticosecale Wittmack). BMC Genomics 12:380.

Gowda M., V. Hahn, J.C. Reif, C.F.H. Longin, K. Alheit, and H.P. Maurer. 2011. Potential for simultaneous improvement of grain and biomass yield in central European winter triticale germplasm. Field Crops Research 121:153-157.

Liu, W., M. Gowda, J. Steinhoff, H.P. Maurer, T. Würschum, C.F.H. Longin, F. Cossic, and J.C. Reif. 2011. Association mapping in an elite maize breeding population. Theoretical and Applied Genetics 123:847-858.

Longin, C.F.H., W. Liu, and J.C. Reif. 2011. Association of progeny variance and genetic distances among parents and implications for the design of elite maize breeding programs. Maydica 56:227-232. 

Miedaner, T., T. Würschum, H.P. Maurer, V. Korzun, V. Ebmeyer, and J.C. Reif. 2011. Association mapping for Fusarium head blight resistance in soft European winter wheat. Molecular Breeding DOI 10.1007/s11032-010-9516-z.

Reif, J.C., M. Gowda, H.P. Maurer, C.F.H. Longin, V. Korzun, E. Ebmeyer, R. Bothe, C. Pietsch, and T. Würschum. 2011. Genetic architecture of quality traits in soft winter wheat. Theoretical and Applied Genetics 122:961-970.

Reif, J.C., H.P Maurer, V. Korzun, E. Ebmeyer, T. Miedaner, and T. Würschum. 2011. Mapping QTLs with main and epistatic effects underlying grain yield and heading time in soft winter wheat. Theoretical and Applied Genetics 123:283-292.

Schilly, A., P. Risser, E. Ebmeyer, L. Hartl, J.C. Reif, T. Würschum, and T. Miedaner. 2011. Stability of adult-plant resistance to Septoria tritici in 24 European winter wheat varieties across nine field environments. Journal of Phytopathology 159:411-416.

Steinhoff, J., W. Liu, H.P. Maurer, T. Würschum, C.F.H. Longin, N. Ranc, and J.C. Reif. 2011. Multiple-line cross QTL-mapping in European elite maize. Crop Science 52:2505-2516.

Van Inghelandt, D., J.C. Reif, B. S. Dhillon, P. Flament, and A. E. Melchinger. 2011. Extent and genome-wide distribution of linkage disequilibrium in commercial maize germplasm. Theoretical and Applied Genetics 123:11-20.

Würschum, T., H.P. Maurer, T. Kraft, G. Janssen, C. Nilsson, and J.C. Reif. 2011. Genome-wide association mapping of agronomic traits in sugar beet. Theoretical and Applied Genetics 123:1121-1131.

Würschum, T., H.P. Maurer, B. Schulz, J. Möhring, and J.C. Reif. 2011. Genome-wide association mapping reveals epistasis and genetic interaction networks in sugar beet. Theoretical and Applied Genetics 123:109-118.