© Leibniz-Institut (IPK)

Mission

The research group Heterosis studies plant performance, primarily in the model plant Arabidopsis thaliana (thale cress) and the crop plants maize, oilseed rape and barley. Of particular interest are the molecular factors, processes and mechanisms that control growth under fluctuating environmental conditions, or that contribute to heterosis of biomass formation.

Climate models predict rising average temperatures and changes in the amount and distribution of precipitation. Crop yield is increasingly and adversely affected by drought and extreme temperatures. Plants must adjust their growth and metabolism dynamically to perform well in this often rapidly changing environment.

Investigations focus on biomass accumulation during the vegetative phase in shoot and root, as well as the quality of formed seeds. In order to analyse the molecular processes under relevant field-like conditions, state-of-the-art environment simulation and non-invasive phenotyping methods are combined with systems biology analysis procedures.

We use natural and induced biological variability to answer the question of how plants regulate their growth under changing environmental conditions. The aim is to identify (epi)genetic factors, as well as molecular and physiological mechanisms that influence and control plant performance under relevant dynamic environmental conditions. In doing so, plant cultivation under fully controlled, field-like environmental conditions also allows the simulation of cultivation conditions as they may occur in future climate scenarios. By modelling the complex molecular processes in the plant with the help of the phenotypic and molecular omics data obtained, the critical factors can be determined. Ultimately, this knowledge will inform the optimisation of breeding strategies to stabilise crop yields and product qualities under changing climatic conditions.

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Projects

  • Evaluation of the performance of rapeseed lines with respect to growth, seed formation and seed quality under highly controlled field-like dynamic conditions for the integration with spatially and temporally resolved ‘omics’ analyses, and their visualisation using augmented reality (AR) and advanced virtuality (AV) techniques. (AVATARS)     
    BMBF funded, in cooperation with RGs SE, AAN, NAM, BA, MD, BIT and external partners NPZi, BPO, Leibniz-University of Hannover, University of Bielefeld, Technical University of Kaiserslautern
     
  • Exploiting biodiversity to increase the efficiency of how plants use light energy to convert carbon dioxide and water into sugars to boost yields in key crops such as maize. (CAPITALISE)  
    H2020 funded; in cooperation with 14 European, two Israeli and one Ethiopian partners
     
  • Precision phenotyping of maize lines from Mediterranean populations for drought and heat stress related traits. (DROMAMED)
    BMBF (PRIMA) funded; in cooperation CSIC-MBG Spain (P. Revilla), ENSA Algeria (A. Djemel), University of Vigo Spain (R. Santiago), University of Bologna Italy (E. Frascaroli), CRERA-CI Italy (C. Balconi), NOVA University Lisbon Portugal (M.L. Alves), INRA France (A. Charcosset), Hassan I University Morocco (A. K. Essamadi)
     
  • Time-resolved identification and characterisation of candidate genes associated with growth dynamics and growth differences in maize, Arabidopsis and rapeseed with particular emphasis on genes influencing expression and metabolite patterns and the corresponding networks under fluctuating conditions. (Growth Dynamics) 
    in cooperation with RGs NAM, BA, APP, RGR, QG
     
  • Characterisation of genes and gene-networks causing differences in growth (including heterosis) and resource efficiency in the model system Arabidopsis, and translation to crop plants rapeseed, maize and barley.    
    in cooperation with RGs APP, MD, GGR, DG, QG, MPE
     
  • Characterisation of epigenetic factors that are involved in growth and resource efficiency in Arabidopsis and barley, including detection of epiQTL causing biomass heterosis in Arabidopsis using epiRILs, and identification of the relevant DNA methylation and gene expression patterns. (epiRILs)    

    in cooperation with RGs MPE, GGR, DG, ScienceCampus Halle, Barley Epigenome Platform K. Humbeck (MLU Halle), and F. Johannes, Population Epigenetics & Epigenomics TU München
     
  • Identification and validation of hybrid predictors derived from genomic, phenotypic and biochemical data of rapeseed inbreds and hybrids. (PREDICT)   
    DFG funded, in cooperation with the University of Gießen, NPZ and DSV

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Staff

NameEmailTelephone
Scientists
AltmannProf. Dr. Thomas altmann@ipk-gatersleben.de+49 39482 5-214
ORCID iD icon0000-0002-3759-360X
AltschmiedDr. Lothar lothar@ipk-gatersleben.de+49 39482 5-242
ORCID iD icon0000-0002-7692-2971
HeuermannDr. Marc heuermann@ipk-gatersleben.de+49 39482 5-813
ORCID iD icon0000-0002-5520-5287
KnochDr. Dominic knochd@ipk-gatersleben.de+49 39482 5-809
ORCID iD icon0000-0002-9362-3105
KuhlmannDr. Markus kuhlmann@ipk-gatersleben.de+49 39482 5-172
ORCID iD icon0000-0003-3104-0825
MeyerDr. Rhonda meyer@ipk-gatersleben.de+49 39482 5-257
ORCID iD icon0000-0002-6210-4900
Scientific guests / Fellowship
ConradProf. Dr. Udo conradu@ipk-gatersleben.de+49 39482 5-253
ORCID iD icon0000-0002-9416-3470
Lopez-MalvarDr. Ana malvar@ipk-gatersleben.de
Lab Technicians
Bettermann Sibille betterma@ipk-gatersleben.de+49 39482 5-388
Driesslein Sandra drieslei@ipk-gatersleben.de+49 39482 5-324
Fischer Iris fischeri@ipk-gatersleben.de+49 39482 5-735
Michaelis Marion michaelism@ipk-gatersleben.de+49 39482 5-764
Pfort Ingrid pfort@ipk-gatersleben.de+49 39482 5-249
Rech Alexandra rech@ipk-gatersleben.de+49 39482 5-348
Tillack Isolde tillack@ipk-gatersleben.de+49 39482 5-249
Topali Georgia topali@ipk-gatersleben.de+49 39482 5-249

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Publications

AuthorTitle
2021

Dodig D, Božinović S, Nikolić A, Zorić M, Vančetović J, Ignjatović-Micić D, Delić N, Weigelt-Fischer K, Altmann T, Junker A:

Dynamics of maize vegetative growth and drought adaptability using image-based phenotyping under controlled conditions. Front. Plant Sci. 12 (2021) 652116. https://dx.doi.org/10.3389/fpls.2021.652116

Feiner A, Pitra N, Matthews P, Pillen K, Wessjohann L A, Riewe D:

Downy mildew resistance is genetically mediated by prophylactic production of phenylpropanoids in hop. Plant Cell Environ. 44 (2021) 323-338. https://dx.doi.org/10.1111/pce.13906

Grehl C, Schultheiß C, Hoffmann K, Binder M, Altmann T, Grosse I, Kuhlmann M:

Detection of SARS-CoV-2 derived small RNAs and changes in circulating small RNAs associated with COVID-19. Viruses 13 (2021) 1593. https://dx.doi.org/10.3390/v13081593

Knoch D, Werner C R, Meyer R C, Riewe D, Abbadi A, Lücke S, Snowdon R, Altmann T:

Multi-omics-based prediction of hybrid performance in canola. Theor. Appl. Genet. 134 (2021) 1147–1165. https://dx.doi.org/10.1007/s00122-020-03759-x

Langstroff A, Heuermann M C, Stahl A, Junker A:

Opportunities and limits of controlled-environment plant phenotyping for climate response traits. Theor. Appl. Genet. (2021) Epub ahead of print. dx.doi.org/10.1007/s00122-021-03892-1

Li M, Hensel G, Melzer M, Junker A, Tschiersch H, Ruwe H, Arend D, Kumlehn J, Börner T, Stein N:

Mutation of the ALBOSTRIANS ohnologous gene HvCMF3 impairs chloroplast development and thylakoid architecture in barley. Front. Plant Sci. 12 (2021) 732608. https://dx.doi.org/10.3389/fpls.2021.732608

Meyer R C, Weigelt-Fischer K, Knoch D, Heuermann M, Zhao Y, Altmann T:

Temporal dynamics of QTL effects on vegetative growth in Arabidopsis thaliana. J. Exp. Bot. 72 (2021) 476–490. https://dx.doi.org/10.1093/jxb/eraa490

Narisetti N, Henke M, Seiler C, Junker A, Ostermann J, Altmann T, Gladilin E:

Fully-automated root image analysis (faRIA). Sci. Rep. 11 (2021) 16047. https://dx.doi.org/10.1038/s41598-021-95480-y

Patocchi A, Keilwagen J, Berner T, Wenzel S, Broggini G A L, Altschmied L, Hanke M-V, Flachowsky H:

No evidence of unexpected transgenic insertions in T1190 – a transgenic apple used in rapid cycle breeding – following whole genome sequencing. Front. Plant Sci. 12 (2021) 715737. https://dx.doi.org/10.3389/fpls.2021.715737

2020

Butardo Jr V M, Seiler C, Sreeenivasulu N, Kuhlmann M:

Obtaining high-quality transcriptome data from cereal seeds by a modified method for gene expression profiling. J. Vis. Exp. 159 (2020) e60602. https://dx.doi.org/10.3791/60602

Feiner A E:

Genetic and metabolic analysis of downy mildew resistance in hops (Humulus lupulus L.). (PhD Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät III Agrar- und Ernährungswissenschaften, Geowissenschaften und Informatik (2020) 140 pp.

Henke M, Junker A, Neumann K, Altmann T, Gladilin E:

A two-step registration-classification approach to automated segmentation of multimodal images for high-throughput greenhouse plant phenotyping. Plant Methods 16 (2020) 95. https://dx.doi.org/10.1186/s13007-020-00637-x

Heuermann M:

Gene discovery using high-throughput phenotyping under fluctuating growth conditions and rapid identification of mutated genes. (PhD Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät I Biowissenschaften (2020) 141 pp.

Ho T T, Nguyen G T, Pham N B, Le V P, Trinh T B N, Vu T H, Phan H T, Conrad U, Chu H H:

Plant-derived trimeric CO-26K-equivalent epitope induced neutralizing antibodies against Porcine epidemic diarrhea virus. Front. Immunol. 11 (2020) 2152. https://dx.doi.org/10.3389/fimmu.2020.02152

Johansson K S L, El-Soda M, Pagel E, Meyer R C, Tõldsepp K, Nilsson A K, Brosché M, Kollist H, Uddling J, Andersson M X:

Genetic controls of short- and long-term stomatal CO2 responses in Arabidopsis thaliana. Ann. Bot. 126 (2020) 179-190. https://dx.doi.org/10.1093/aob/mcaa065

Knoch D:

Growth-related systems genetics analyses and hybrid performance prediction in canola. (PhD Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät I Biowissenschaften (2020) 185 pp.

Knoch D, Abbadi A, Grandke F, Meyer R C, Samans B, Werner C R, Snowdon R J, Altmann T:

Strong temporal dynamics of QTL action on plant growth progression revealed through high-throughput phenotyping in canola. Plant Biotechnol. J. 18 (2020) 68-82. https://dx.doi.org/10.1111/pbi.13171

Krieg L-M:

Molekulare Analyse eines QTL zur Stickstoffverwertung in Arabidopsis thaliana. (Bachelor Thesis) Bernburg, Hochschule Anhalt, Fachbereich Landwirtschaft, Ökotrophologie und Landschaftsentwicklung (2020) 65 pp.

Kuhlmann M, Meyer R C, Jia Z, Klose D, Krieg L-M, von Wirén N, Altmann T:

Epigenetic variation at a genomic locus affecting biomass accumulation under low nitrogen in Arabidopsis thaliana. Agronomy 10 (2020) 636. https://doi.org/10.3390/agronomy10050636

Melandri G, AbdElgawad H, Riewe D, Hageman J A, Asard H, Beemster G T S, Kadam N, Jagadish K, Altmann T, Ruyter-Spira C, Bouwmeester H:

Biomarkers for grain yield stability in rice under drought stress. J. Exp. Bot. 71 (2020) 669–683. https://dx.doi.org/10.1093/jxb/erz221

Mikołajczak K, Ogrodowicz P, Ćwiek-Kupczyńska H, Weigelt-Fischer K, Mothukuri S R, Junker A, Altmann T, Krystkowiak K, Adamski T, Surma M, Kuczyńska A, Krajewski P:

Image phenotyping of spring barley (Hordeum vulgare L.) RIL population under drought: selection of traits and biological interpretation. Front. Plant Sci. 11 (2020) 743. https://dx.doi.org/10.3389/fpls.2020.00743

Phan H T, Pham V T, Ho T T, Pham N B, Chu H H, Vu T H, Abdelwhab E M, Scheibner D, Mettenleiter T C, Hanh T X, Meister A, Gresch U, Conrad U:

Immunization with plant-derived multimeric H5 hemagglutinins protect chicken against highly pathogenic avian influenza virus H5N1. Vaccines 8 (2020) 593. https://dx.doi.org/10.3390/vaccines8040593

Poursarebani N, Trautewig C, Melzer M, Nussbaumer T, Lundqvist U, Rutten T, Schmutzer T, Brandt R, Himmelbach A, Altschmied L, Koppolu R, Youssef H M, Sibout R, Dalmais M, Bendahmane A, Stein N, Xin Z, Schnurbusch T:

COMPOSITUM 1 contributes to the architectural simplification of barley inflorescence via meristem identity signals. Nat. Commun. 11 (2020) 5138. https://dx.doi.org/10.1038/s41467-020-18890-y

Rizzo P, Altschmied L, Ravindran B M, Rutten T, DAuria J C:

The biochemical and genetic basis for the biosynthesis of bioactive compounds in Hypericum perforatum L., one of the largest medicinal crops in Europe. Genes 11 (2020) E1210. https://dx.doi.org/10.3390/genes11101210

Wiebach J, Nagel M, Börner A, Altmann T, Riewe D:

Age-dependent loss of seed viability is associated with increased lipid oxidation and hydrolysis. Plant Cell Environ. 43 (2020) 303-314. https://dx.doi.org/10.1111/pce.13651

Woźniak N J, Kappel C, Marona C, Altschmied L, Neuffer B, Sicard A:

A similar genetic architecture underlies the convergent evolution of the selfing syndrome in Capsella. Plant Cell 32 (2020) 935-949. https://dx.doi.org/10.1105/tpc.19.00551

2019

Anacleto R, Badoni S, Parween S, Butardo V M, Jr., Misra G, Cuevas R P, Kuhlmann M, Trinidad T P, Mallillin A C, Acuin C, Bird A R, Morell M K, Sreenivasulu N:

Integrating a genome-wide association study with a large-scale transcriptome analysis to predict genetic regions influencing the glycaemic index and texture in rice. Plant Biotechnol. J. 17 (2019) 1261-1275. https://dx.doi.org/10.1111/pbi.13051

Demidov D, Heckmann S, Weiss O, Rutten T, Tomaštíková E D, Kuhlmann M, Scholl P, Municio C M, Lermontova I, Houben A:

Deregulated phosphorylation of CENH3 at Ser65 affects the development of floral meristems in Arabidopsis thaliana. Front. Plant Sci. 10 (2019) 928. https://dx.doi.org/10.3389/Fpls.2019.00928

Dodig D, Bozinovic S, Nikolic A, Zoric M, Vancetovic J, Ignjatovic-Micic D, Delic N, Weigelt-Fischer K, Junker A, Altmann T:

Image-derived traits related to mid-season growth performance of maize under nitrogen and water stress. Front. Plant Sci. 10 (2019) 814. https://dx.doi.org/10.3389/Fpls.2019.00814

Ferguson J N, Meyer R C, Edwards K D, Humphry M, Brendel O, Bechtold U:

Accelerated flowering time reduces lifetime water use without penalizing reproductive performance in Arabidopsis. Plant Cell Environ. 42 (2019) 1847-1867. https://dx.doi.org/10.1111/pce.13527

Henke M, Junker A, Neumann K, Altmann T, Gladilin E:

Comparison and extension of three methods for automated registration of multimodal plant images. Plant Methods 15 (2019) 44. https://dx.doi.org/10.1186/s13007-019-0426-8

Henke M, Junker A, Neumann K, Altmann T, Gladilin E:

Comparison of feature point detectors for multimodal image registration in plant phenotyping. PLoS One 14 (2019) e0221203. https://dx.doi.org/10.1371/journal.pone.0221203

Heuermann M C, Rosso M G, Mascher M, Brandt R, Tschiersch H, Altschmied L, Altmann T:

Combining next-generation sequencing and progeny testing for rapid identification of induced recessive and dominant mutations in maize M2 individuals. Plant J. 100 (2019) 851-862. https://dx.doi.org/10.1111/tpj.14431

Jia Z, Giehl R F H, Meyer R C, Altmann T, von Wirén N:

Natural variation of BSK3 tunes brassinosteroid signaling to regulate root foraging under low nitrogen. Nat. Commun. 10 (2019) 2378. https://dx.doi.org/10.1038/s41467-019-10331-9

Kuhlmann M:

DNA-Methylierung – das 5. Element. Biol. Unserer Zeit 49 (2019) 342-349. https://dx.doi.org/10.1002/biuz.201910686

Lück S, Kreszies T, Strickert M, Schweizer P, Kuhlmann M, Douchkov D:

siRNA-Finder (si-Fi) software for RNAi-target design and off-target prediction. Front. Plant Sci. 10 (2019) 1023. https://dx.doi.org/10.3389/fpls.2019.01023

Meyer R C, Gryczka C, Neitsch C, Müller M, Bräutigam A, Schlereth A, Schön H, Weigelt-Fischer K, Altmann T:

Genetic diversity for nitrogen use efficiency in Arabidopsis thaliana. Planta 250 (2019) 41–57. https://dx.doi.org/10.1007/s00425-019-03140-3

Narisetti N, Henke M, Seiler C, Shi R, Junker A, Altmann T, Gladilin E:

Semi-automated Root Image Analysis (saRIA). Sci. Rep. 9 (2019) 19674. https://dx.doi.org/10.1038/s41598-019-55876-3

Püffeld M, Seiler C, Kuhlmann M, Sreenivasulu N, Butardo V M:

Analysis of developing rice grain transcriptome using the agilent microarray platform. In: Sreenivasulu N (Ed.): Rice grain quality: methods and protocols. (Series: Methods in molecular biology, Vol. 1892) New York, NY: Humana Press (2019) 277-300. doi.org/10.1007/978-1-4939-8914-0_16 ISBN 978-1-4939-8912-6

Rizzo P, Altschmied L, Stark P, Rutten T, Guendel A, Scharfenberg S, Franke K, Baeumlein H, Wessjohann L, Koch M, Borisjuk L, Sharbel T F:

Discovery of key regulators of dark glands development and hypericin biosynthesis in St. Johns wort (Hypericum perforatum). Plant Biotechnol. J. 17 (2019) 2299-2312. https://dx.doi.org/10.1111/pbi.13141

Seiler C, Kuhlmann M:

Quantification of DNA methylation as biomarker for grain quality. In: Sreenivasulu N (Ed.): Rice grain quality: methods and protocols. (Series: Methods in molecular biology, Vol. 1892) New York, NY: Humana Press (2019) 301-310. doi.org/10.1007/978-1-4939-8914-0_17 ISBN 978-1-4939-8912-6

Surdonja K:

Influence of post-anthesis drought stress on germination and malting quality in barley. (PhD Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät I, Biowissenschaften (2019) 104 pp.

Tedeschi F, Rizzo P, Huong B, Czihal A, Rutten T, Altschmied L, Scharfenberg S, Grosse I, Becker C, Weigel D, Bäumlein H, Kuhlmann M:

EFFECTOR OF TRANSCRIPTION factors are novel plant-specific regulators associated with genomic DNA methylation in Arabidopsis. New Phytol. 221 (2019) 261-278. https://dx.doi.org/10.1111/nph.15439

Zhang Y, Ramming A, Heinke L, Altschmied L, Slotkin R K, Becker J D, Kappel C, Lenhard M:

The poly(A) polymerase PAPS1 interacts with the RNA-directed DNA methylation pathway in sporophyte and pollen development. Plant J. 99 (2019) 655-672. https://dx.doi.org/10.1111/tpj.14348

2018

Altmann S, Muino J M, Lortzing V, Brandt R, Himmelbach A, Altschmied L, Hilker M:

Transcriptomic basis for reinforcement of elm antiherbivore defence mediated by insect egg deposition. Mol. Ecol. 27 (2018) 4901-4915. https://dx.doi.org/10.1111/mec.14900

Casartelli A, Riewe D, Hubberten H M, Altmann T, Hoefgen R, Heuer S:

Exploring traditional aus-type rice for metabolites conferring drought tolerance. Rice 11 (2018) 9. https://doi.org/10.1186/s12284-017-0189-7

Chen D, Shi R, Pape J-M, Neumann K, Arend D, Graner A, Chen M, Klukas C:

Predicting plant biomass accumulation from image-derived parameters. GigaScience 7 (2018) 1-13. https://dx.doi.org/10.1093/gigascience/giy001

Döll S, Kuhlmann M, Rutten T, Mette M F, Scharfenberg S, Petridis A, Berreth D C, Mock H-P:

Accumulation of the coumarin scopolin under abiotic stress conditions is mediated by the Arabidopsis thaliana THO/TREX complex. Plant J. 93 (2018) 431-444. https://dx.doi.org/10.1111/tpj.13797

Grehl C, Kuhlmann M, Becker C, Glaser B, Grosse I:

How to design a whole-genome bisulfite sequencing experiment. Epigenomes 2 (2018) 21. https://dx.doi.org/10.3390/epigenomes2040021

Hashemipetroudi S H, Nematzadeh G, Ahmadian G, Yamchi A, Kuhlmann M:

Assessment of DNA contamination in RNA samples based on ribosomal DNA. J. Vis. Exp. 131 (2018) e55451. https://dx.doi.org/10.3791/55451

Henke M, Junker A, Neumann K, Altmann T, Gladilin E:

Automated alignment of multi-modal plant images using integrative phase correlation approach. Front. Plant Sci. 9 (2018) 1519. https://dx.doi.org/10.3389/fpls.2018.01519

Johnson J M, Thürich J, Petutschnig E K, Altschmied L, Meichsner D, Sherameti I, Dindas J, Mrozinska A, Paetz C, Scholz S S, Furch A C U, Lipka V, Hedrich R, Schneider B, Svatoš A, Oelmüller R:

A poly(A) ribonuclease controls the cellotriose-based interaction between Piriformospora indica and its host Arabidopsis. Plant Physiol. 176 (2018) 2496-2514. https://dx.doi.org/10.1104/pp.17.01423

Klose D:

Untersuchung der Stickstoffverwertung unterschiedlicher Arabidopsis-Akzessionen. (Bachelor Thesis) Mittweida, Hochschule Mittweida, University of Applied Sciences, Fakultät: Angewandte Computer- und Biowissenschaften (2018) 109 pp.

Kochevenko A, Jiang Y, Seiler C, Surdonja K, Kollers S, Reif J C, Korzun V, Graner A:

Identification of QTL hot spots for malting quality in two elite breeding lines with distinct tolerance to abiotic stress. BMC Plant Biol. 18 (2018) 106. https://dx.doi.org/10.1186/s12870-018-1323-4

Meitzel T:

Signaling pathways in legume seed development: evidence for a crosstalk between trehalose 6-phosphate and auxin. (PhD Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät I Biowissenschaften (2018) 177 pp.

Pommerrenig B, Junker A, Abreu I, Bieber A, Fuge J, Willner E, Bienert M D, Altmann T, Bienert G P:

Identification of rapeseed (Brassica napus) cultivars with a high tolerance to boron-deficient conditions. Front. Plant Sci. 9 (2018) 1142. https://dx.doi.org/10.3389/fpls.2018.01142

Radchuk V, Tran V, Radchuk R, Diaz-Mendoza M, Weier D, Fuchs J, Riewe D, Hensel G, Kumlehn J, Munz E, Heinzel N, Rolletschek H, Martinez M, Borisjuk L:

Vacuolar processing enzyme 4 contributes to maternal control of grain size in barley by executing programmed cell death in the pericarp. New Phytol. 218 (2018) 1127-1142. https://dx.doi.org/10.1111/nph.14729

Shi R, Junker A, Seiler C, Altmann T:

Phenotyping roots in darkness: disturbance-free root imaging with near infrared illumination. Funct. Plant Biol. 45 (2018) 400-411. https://doi.org/10.1071/FP17262

Shi R, Melzer M, Zheng S, Benke A, Stich B, von Wirén N:

Iron retention in root hemicelluloses causes genotypic variability in the tolerance to iron deficiency-induced chlorosis in maize. Front. Plant Sci. 9 (2018) 557. https://dx.doi.org/10.3389/fpls.2018.00557

Wang H, Chen W, Eggert K, Charnikhova T, Bouwmeester H, Schweizer P, Hajirezaei M R, Seiler C, Sreenivasulu N, von Wirén N, Kuhlmann M:

Abscisic acid influences tillering by modulation of strigolactones in barley. J. Exp. Bot. 69 (2018) 3883-3898. https://dx.doi.org/10.1093/jxb/ery200

2017

Blossei J:

Untersuchung zum Einfluss der Überexpression von ERI auf die Zunahme der frühen Biomasse. (Bachelor Thesis) Bremen, Hochschule Bremen, Internationaler Studiengang Technische und Angewandte Biologie, Fakultät 5 (2017) 42 pp.

Chen D:

Dissecting and modeling the phenotypic components of plant growth and drought responses based on high-throughput image analysis. (PhD Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät I Biowissenschaften (2017) 185 pp.

de Guzman M K, Parween S, Butardo V M, Alhambra C M, Anacleto R, Seiler C, Bird A R, Chow C P, Sreenivasulu N:

Investigating glycemic potential of rice by unraveling compositional variations in mature grain and starch mobilization patterns during seed germination. Sci. Rep. 7 (2017) 5854. https://dx.doi.org/10.1038/s41598-017-06026-0

Galla G, Zenoni S, Avesani L, Altschmied L, Rizzo P, Sharbel T F, Barcaccia G:

Pistil transcriptome analysis to disclose genes and gene products related to Aposporous apomixis in Hypericum perforatum L. Front. Plant Sci. 8 (2017) 79. https://dx.doi.org/10.3389/fpls.2017.00079

Kloth K J, Busscher J, Wiegers G, Kruijer W, Buijs G, Meyer R C, Albrectsen B R, Bouwmeester H J, Dicke M, Jongsma M A:

SIEVE ELEMENT-LINING CHAPERONE 1 restricts aphid feeding on Arabidopsis during heat stress. Plant Cell 29 (2017) 2450-2464. https://dx.doi.org/10.1105/tpc.16.00424

Knoch D, Riewe D, Meyer R C, Boudichevskaia A, Schmidt R, Altmann T:

Genetic dissection of metabolite variation in Arabidopsis seeds: evidence for mQTL hotspots and a master regulatory locus of seed metabolism. J. Exp. Bot. 68 (2017) 1655-1667. https://doi.org/10.1093/jxb/erx049

Ma W, Gabriel T S, Martis M M, Gursinsky T, Schubert V, Vrana J, Dolezel J, Grundlach H, Altschmied L, Scholz U, Himmelbach A, Behrens S E, Banaei-Moghaddam A M, Houben A:

Rye B chromosomes encode a functional Argonaute-like protein with in vitro slicer activities similar to its A chromosome paralog. New Phytol. 213 (2017) 916-928. https://dx.doi.org/10.1111/nph.14110

Muraya M M, Chu J, Zhao Y, Junker A, Klukas C, Reif J C, Altmann T:

Genetic variation of growth dynamics in maize (Zea mays L.) revealed through automated non-invasive phenotyping. Plant J. 89 (2017) 366–380. https://dx.doi.org/10.1111/tpj.13390

Patzold F:

Identifikation von QTL für Zwergrostresistenz (Puccinia hordei) in ausgewählten Familien der Gerste (Hordeum vulgare ssp. vulgare) Nested Association Mapping Population NAM HEB-25. (Master Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg (2017) 74 pp.

Radchuk V, Riewe D, Peukert M, Matros A, Strickert M, Radchuk R, Weier D, Steinbiß H-H, Sreenivasulu N, Weschke W, Weber H:

Down-regulated sucrose transporters HvSUT1, HvSUT2 affects sucrose homeostasis along its delivery path in barley grains. J. Exp. Bot. 68 (2017) 4595-4612. https://doi.org/10.1093/jxb/erx266

Riewe D, Wiebach J, Altmann T:

Structure annotation and quantification of wheat seed oxidized lipids by high resolution LC-MS/MS. Plant Physiol. 175 (2017) 600-618. https://dx.doi.org/10.1104/pp.17.00470

Sandmann M, Talbert P, Demidov D, Kuhlmann M, Rutten T, Conrad U, Lermontova I:

Targeting of A. thaliana KNL2 to centromeres depends on the conserved CENPC-k motif in its C-terminus. Plant Cell 29 (2017) 144-155. https://dx.doi.org/10.1105/tpc.16.00720

Schmidt R, Boudichevskaia A, Cao H X, He S, Meyer R C, Reif J C:

Extracting genotype information of Arabidopsis thaliana recombinant inbred lines from transcript profiles established with high-density oligonucleotide arrays. Plant Cell Rep. 36 (2017) 1871-1881. https://dx.doi.org/10.1007/s00299-017-2200-6

Surdonja K, Eggert K, Hajirezaei M-R, Harshavardhan V, Seiler C, von Wirén N, Sreenivasulu N, Kuhlmann M:

Increase of DNA methylation at the HvCKX2.1 promoter by terminal drought stress in barley. Epigenomes 1 (2017) 9. https://dx.doi.org/10.3390/epigenomes1020009

Tedeschi F, Rizzo P, Rutten T, Altschmied L, Bäumlein H:

RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol. 213 (2017) 1909–1924. https://dx.doi.org/10.1111/nph.14293

Thirulogachandar V, Alqudah A M, Koppolu R, Rutten T, Graner A, Hensel G, Kumlehn J, Bräutigam A, Sreenivasulu N, Schnurbusch T, Kuhlmann M:

Leaf primordium size specifies leaf width and vein number among row-type classes in barley. Plant J. 91 (2017) 601-612. https://dx.doi.org/10.1111/tpj.13590

Tikhenko N, Rutten T, Senula A, Rubtsova M, Keller E R J, Börner A:

The changes in the reproductive barrier between hexaploid wheat (Triticum aestivum L.) and rye (Secale cereale L.): different states lead to different fates. Planta 246 (2017) 377–388. https://dx.doi.org/10.1007/s00425-017-2694-8

Tschiersch H, Junker A, Meyer R C, Altmann T:

Establishment of integrated protocols for automated high throughput kinetic chlorophyll fluorescence analyses. Plant Methods 13 (2017) 54. https://dx.doi.org/10.1186/s13007-017-0204-4

Venkatasubbu T:

Dosage of duplicated and antifunctionalized homeobox proteins influences leaf and spikelet development in barley (Hordeum vulgare L.). (PhD Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät I - Biowissenschaften (2017) 165 pp.

Walch-Liu P, Meyer R C, Altmann T, Forde B G:

QTL analysis of the developmental response to L-glutamate in Arabidopsis roots and its genotype-by-environment interactions. J. Exp. Bot. 68 (2017) 2919-2931. https://dx.doi.org/10.1093/jxb/erx132

Wang H:

Genetic manipulation of the cross-talk between abscisic acid and strigolactones and their biosynthetic link during late tittelring in barley. (PhD Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät I Biowissenschaften (2017) 114 pp.

2016

Arend D, Junker A, Scholz U, Schüler D, Wylie J, Lange M:

PGP repository: a plant phenomics and genomics data publication infrastructure. Database 2016 (2016) 1-10. https://dx.doi.org/10.1093/database/baw033

Arend D, Lange M, Pape J-M, Weigelt-Fischer K, Arana-Ceballos F, Mücke I, Klukas C, Altmann T, Scholz U, Junker A:

Quantitative monitoring of Arabidopsis thaliana growth and development using high-throughput plant phenotyping. Sci. Data 3 (2016) 160055. https://dx.doi.org/10.1038/sdata.2016.55

Ćwiek-Kupczyńska H, Altmann T, Arend D, Arnaud E, Chen D, Cornut G, Fiorani F, Frohmberg W, Junker A, Klukas C, Lange M, Mazurek C, Nafissi A, Neveu P, van Oeveren J, Pommier C, Poorter H, Rocca-Serra P, Sansone S-A, Scholz U, van Schriek M, Seren Ü, Usadel B, Weise S, Kersey P, Krajewski P:

Measures for interoperability of phenotypic data: minimum information requirements and formatting. Plant Methods 12 (2016) 44. https://dx.doi.org/10.1186/s13007-016-0144-4

Edlich-Muth C, Muraya M M, Altmann T, Selbig J:

Phenomic prediction of maize hybrids. Biosystems 146 (2016) 102-109. https://dx.doi.org/10.1016/j.biosystems.2016.05.008

Graeff M, Straub D, Eguen T, Dolde U, Rodrigues V, Brandt R, Wenkel S:

MicroProtein-mediated recruitment of CONSTANS into a TOPLESS trimeric complex represses flowering in Arabidopsis. PLoS Genet. 12 (2016) e1005959. https://dx.doi.org/10.1371/journal.pgen.1005959

Hashemi S H, Nematzadeh G, Ahmadian G, Yamchi A, Kuhlmann M:

Identification and validation of Aeluropus littoralis reference genes for quantitative real-time PCR normalization. J. Biol. Res. (Thessalon.) 23 (2016) 18. https://dx.doi.org/10.1186/s40709-016-0053-8

Hashemipetroudi S H, Nematzadeh G, Ahmadian G, Yamchi A, Kuhlmann M:

Expression analysis of salt stress related expressed sequence tags (ESTs) from Aeluropus littoralis by quantitative real-time PCR. Biosci. Biotech. Res. Comm. 9 (2016) 445-456.

Hertig C:

Characterization and interaction studies of two-component signaling components expressed in barley endosperm transfer cells. (Master Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät I, Institut für Biologie (2016) 72 pp.

Hosseini S A, Hajirezaei M-R, Seiler C, Sreenivasulu N, von Wiren N:

A potential role of flag leaf potassium in conferring tolerance to drought-Induced leaf senescence in barley. Front. Plant Sci. 7 (2016) 206. https://dx.doi.org/10.3389/fpls.2016.00206

Huu C N, Kappel C, Keller B, Sicard A, Takebayashi Y, Breuninger H, Nowak M D, Baurle I, Himmelbach A, Burkart M, Ebbing-Lohaus T, Sakakibara H, Altschmied L, Conti E, Lenhard M:

Presence versus absence of CYP734A50 underlies the style-length dimorphism in primroses. eLife 5 (2016) e17956. https://dx.doi.org/10.7554/eLife.17956

Kumke K, Macas J, Fuchs J, Altschmied L, Kour J, Dhar M K, Houben A:

Plantago lagopus B chromosome is enriched in 5S rDNA-derived satellite DNA. Cytogenet. Genome Res. 148 (2016) 68-73. https://dx.doi.org/10.1159/000444873

Lootens P, De Swaef T, Roldán-Ruiz I, Altmann T:

Workshop “Phenotyping”. In: Roldán-Ruiz I, Baert J, Reheul D (Eds.): Breeding in a world of scarcity: proceedings of the 2015 meeting of the section “Forage crops and amenity grasses” of Eucarpia. Cham: Springer (2016) 301-302. dx.doi.org/10.1007/978-3-319-28932-8_45 ISBN 978-3-319-28930-4

Nawrot R, Barylski J, Lippmann R, Altschmied L, Mock H-P:

Combination of transcriptomic and proteomic approaches helps to unravel the protein composition of Chelidonium majus L. milky sap. Planta 244 (2016) 1055–1064. https://dx.doi.org/10.1007/s00425-016-2566-7

Opitz N, Marcon C, Paschold A, Malik W A, Lithio A, Brandt R, Piepho H P, Nettleton D, Hochholdinger F:

Extensive tissue-specific transcriptomic plasticity in maize primary roots upon water deficit. J. Exp. Bot. 67 (2016) 1095-1107. https://dx.doi.org/10.1093/jxb/erv453

Revilla P, Rodríguez V M, Ordás A, Rincent R, Charcosset A, Giauffret C, Melchinger A E, Schön C-C, Bauer E, Altmann T, Brunel D, Moreno-González J, Campo L, Ouzunova M, Álvarez Á, Ruíz de Galarreta J I, Laborde J, Malvar R A:

Association mapping for cold tolerance in two large maize inbred panels. BMC Plant Biol. 16 (2016) 127. https://dx.doi.org/10.1186/s12870-016-0816-2

Riewe D, Jeon H J, Lisec J, Heuermann M C, Schmeichel J, Seyfarth M, Meyer R C, Willmitzer L, Altmann T:

A naturally occurring promoter polymorphism of the Arabidopsis FUM2 gene causes expression variation and is associated with metabolic and growth traits. Plant J. 88 (2016) 826-838. https://dx.doi.org/10.1111/tpj.13303

Soták M, Czeranková O, Klein D, Nigutová K, Altschmied L, Li L, Jose A, Wurtele E S, Čellárová E:

Differentially expressed genes in hypericin-containing Hypericum perforatum leaf tissues as revealed by de novo assembly of RNA-seq. Plant Mol. Biol. Rep. 34 (2016) 1027–1041. https://dx.doi.org/10.1007/s11105-016-0982-2

Wiebach J:

Prädiktion der Keimfähigkeit von Weizen und Gerste durch metabole Signaturen. (Diploma Thesis) Berlin, Technische Universität Berlin, Institut für Biotechnologie (2016) 80 pp.

Yamunarani R, Ramegowda V, Govind G, Jalendrakumar H G, Udayakumar M, Shankar A G:

Effect of Zn application on its uptake, distribution and concentration of Fe and Cu in finger millet [Eleusine coracana (L.) Gaertn.]. J. Plant Nutr. 39 (2016) 569-580. https://dx.doi.org/10.1080/01904167.2016.1143490

2015

Banaei-Moghaddam A M, Martis M M, Macas J, Gundlach H, Himmelbach A, Altschmied L, Mayer K F, Houben A:

Genes on B chromosomes: Old questions revisited with new tools. Biochim. Biophys. Acta 1849 (2015) 64-70. https://dx.doi.org/10.1016/j.bbagrm.2014.11.007

Castellini A, Edlich-Muth C, Muraya M, Klukas C, Altmann T, Selbig J:

Towards a graph-theoretic approach to hybrid performance prediction from large-scale phenotypic data. In: Lones M, Tyrrell A, Smith S, Fogel G (Eds.): Information Processing in Cells and Tissues.10th International Conference, IPCAT 2015, San Diego, CA, USA, September 14-16, 2015, Proceedings. (Series: Lecture Notes in Computer Science, Vol. 9303) Cham: Springer (2015) 173-184. dx.doi.org/10.1007/978-3-319-23108-2_15 ISBN 978-3-319-23107-5

Fuchs J, Melkus G, Borisjuk L, Jakob P:

Tracking metabolite dynamics in plants via indirect 13C chemical shift imaging with an interleaved variable density acquisition weighted sampling pattern. Magn. Reson. Mat. Phys. 28 (2015) 127-134. https://dx.doi.org/10.1007/s10334-014-0453-4

Hagmann J, Becker C, Müller J, Stegle O, Meyer R C, Wang G, Schneeberger K, Fitz J, Altmann T, Bergelson J, Borgwardt K, Weigel D:

Century-scale methylome stability in a recently diverged Arabidopsis thaliana lineage. PLoS Genet. 11 (2015) e1004920. https://dx.doi.org/10.1371/journal.pgen.1004920

Jeon H-J:

Analysis of allelic gene effects in Arabidopsis thaliana biomass heterosis and metabolism. (PhD Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät I Biowissenschaften (2015) 129 pp.

Junker A, Muraya M M, Weigelt-Fischer K, Arana-Ceballos F, Klukas C, Melchinger A E, Meyer R C, Riewe D, Altmann T:

Optimizing experimental procedures for quantitative evaluation of crop plant performance in high throughput phenotyping systems. Front. Plant Sci. 5 (2015) 770. https://dx.doi.org/10.3389/fpls.2014.00770

Kohl S, Hollmann J, Erban A, Kopka J, Riewe D, Weschke W, Weber H:

Metabolic and transcriptional transitions in barley glumes reveal a role as transitory resource buffers during endosperm filling. J. Exp. Bot. 66 (2015) 1397-1411. https://dx.doi.org/10.1093/jxb/eru492

Löser C, Urit T, Keil P, Bley T:

Studies on the mechanism of synthesis of ethyl acetate in Kluyveromyces marxianus DSM 5422. Appl. Microbiol. Biotechnol. 99 (2015) 1131-1144. https://dx.doi.org/10.1007/s00253-014-6098-4

Marques A, Ribeiro T, Neumann P, Macas J, Novák P, Schubert V, Pellino M, Fuchs J, Ma W, Kuhlmann M, Brandt R, Vanzela A L L, Beseda T, Šimková H, Pedrosa-Harand A, Houben A:

Holocentromeres in Rhynchospora are associated with genome-wide centromere-specific repeat arrays interspersed amongst euchromatin. Proc. Natl. Acad. Sci. U.S.A. 112 (2015) 13633–13638. https://dx.doi.org/10.1073/pnas.1512255112

Meyer R C, Hönig G, Brandt R, Arana-Ceballos F, Neitsch C, Reuter G, Altmann T, Kuhlmann M:

Overexpression of Arabidopsis thaliana ERI, the homolog of C. elegans Enhancer of RNAinterference, leads to enhanced growth. Front. Plant Sci. 6 (2015) 531. https://dx.doi.org/10.3389/fpls.2015.00531

Muñoz-Amatriaín M, Lonardi S, Luo M, Madishetty K, Svensson J, Moscou M, Wanamaker S, Jiang T, Kleinhofs A, Muehlbauer G, Wise R, Stein N, Ma Y, Rodriguez E, Kudrna D, Bhat P R, Chao S, Condamine P, Heinen S, Resnik J, Wing R, Witt H N, Alpert M, Beccuti M, Bozdag S, Cordero F, Mirebrahim H, Ounit R, Wu Y, You F, Zheng J, Šimková H, Doležel J, Grimwood J, Schmutz J, Duma D, Altschmied L, Blake T, Bregitzer P, Cooper L, Dilbirligi M, Falk A, Feiz L, Graner A, Gustafson P, Hayes P, Lemaux P, Mammadov J, Close T:

Sequencing of 15,622 gene-bearing BACs clarifies the gene-dense regions of the barley genome. Plant J. 84 (2015) 216-227. https://dx.doi.org/10.1111/tpj.12959

Muraya M M, Schmutzer T, Ulpinnis C, Scholz U, Altmann T:

Targeted sequencing reveals large-scale sequence polymorphism in maize candidate genes for biomass production and composition. PLoS One 10 (2015) e0132120. https://dx.doi.org/10.1371/journal.pone.0132120

Muscolo A, Junker A, Klukas C, Weigelt-Fischer K, Riewe D, Altmann T:

Phenotypic and metabolic responses to drought and salinity of four contrasting lentil accessions. J. Exp. Bot. 66 (2015) 5467-5480. https://dx.doi.org/10.1093/jxb/erv208

Nagel M, Kranner I, Neumann K, Rolletschek H, Seal C E, Colville L, Fernández-Marín B, Börner A:

Genome-wide association mapping and biochemical markers reveal that seed ageing and longevity are intricately affected by genetic background, developmental and environmental conditions in barley. Plant Cell Environ. 38 (2015) 1011-1022. https://dx.doi.org/10.1111/pce.12474

Rolletschek H, Fuchs J, Friedel S, Börner A, Todt H, Jakob P, Borisjuk L:

A novel noninvasive procedure for high-throughput screening of major seed traits. Plant Biotechnol. J. 13 (2015) 188-199. https://dx.doi.org/10.1111/pbi.12245

Rolletschek H, Grafahrend-Belau E, Munz E, Radchuk V V, Kartäusch R, Tschiersch H, Melkus G, Schreiber F, Jakob P M, Borisjuk L:

Metabolic architecture of the cereal grain and its relevance to maximize carbon use efficiency. Plant Physiol. 169 (2015) 1698-1713. https://dx.doi.org/10.1104/pp.15.00981

Schilling S, Gramzow L, Lobbes D, Kirbis A, Weilandt L, Hoffmeier A, Junker A, Weigelt-Fischer K, Klukas C, Wu F, Meng Z, Altmann T, Theissen G:

Non-canonical structure, function and phylogeny of the B MADS-box gene OsMADS30 of rice (Oryza sativa). Plant J. 84 (2015) 1059-1072. https://dx.doi.org/10.1111/tpj.13055

Schwender J, Hebbelmann I, Heinzel N, Hildebrandt T M, Rogers A, Naik D, Klapperstück M, Braun H P, Schreiber F, Denolf P, Borisjuk L, Rolletschek H:

Quantitative multilevel analysis of central metabolism in developing oilseeds of Brassica napus during in vitro culture. Plant Physiol. 168 (2015) 828-848. https://dx.doi.org/10.1104/pp.15.00385

Sree K S, Keresztes A, Mueller-Roeber B, Brandt R, Eberius M, Fischer W, Appenroth K J:

Phytotoxicity of cobalt ions on the duckweed Lemna minor – Morphology, ion uptake, and starch accumulation. Chemosphere 131 (2015) 149-156. https://dx.doi.org/10.1016/j.chemosphere.2015.03.008

Subbarayan K, Rolletschek H, Senula A, Ulagappan K, Hajirezaei M-R, Keller E R J:

Influence of oxygen deficiency and the role of specific amino acids in cryopreservation of garlic shoot tips. BMC Biotechnol. 15 (2015) 40. https://dx.doi.org/10.1186/s12896-015-0171-7

Thormählen I, Meitzel T, Groysman J, Öchsner A B, von Roepenack-Lahaye E, Naranjo B, Cejudo F J, Geigenberger P:

Thioredoxin f1 and NADPH-dependent thioredoxin reductase C have overlapping functions in regulating photosynthetic metabolism and plant growth in response to varying light conditions. Plant Physiol. 169 (2015) 1766-1786. https://dx.doi.org/10.1104/pp.15.01122

Xie Y, Straub D, Eguen T, Brandt R, Stahl M, Martínez-Garcia J F, Wenkel S:

Meta-analysis of Arabidopsis KANADI1 direct target genes identifies basic growth-promoting module acting upstream of hormonal signaling pathways. Plant Physiol. 169 (2015) 1240-1253. https://dx.doi.org/10.1104/pp.15.00764

Zhang H M, Wheeler S, Xia X, Radchuk R, Weber H, Offler C E, Patrick J W:

Differential transcriptional networks associated with key phases of ingrowth wall construction in trans-differentiating epidermal transfer cells of Vicia faba cotyledons. BMC Plant Biol. 15 (2015) 103. https://dx.doi.org/10.1186/s12870-015-0486-5

2014

Altmann T:

Innovation Pflanzenzüchtung – Leistungsvorhersage mittels tiefer genetischer und biologischer Markerdaten. In: Innovative Erzeugung, Konversion und Nutzung agrarischer Biomasse - Zukunftsfeld der Bioökonomie: 25. Hülsenberger Gespräche. (Schriftenreihe der H. Wilhelm Schaumann Stiftung) Hamburg (2014) 59-67.

Altmann T:

Standpunkt. Pro. Braucht die Bioökonomie die Grüne Gentechnik? Transcript 20 (2014) 54.

Borisjuk L, Melkus G:

Nuclear magnetic resonance imaging of metabolites in plants and animals. In: Hough R, Camarillo J (Eds.): In vivo imaging: new research. New York: Nova Science Publishers (2014) 1-48. ISBN 978-1-62948-633-8

Brandt R, Cabedo M, Xie Y, Wenkel S:

Homeodomain leucine-zipper proteins and their role in synchronizing growth and development with the environment. J. Integr. Plant Biol. 56 (2014) 518-526. https://dx.doi.org/10.1111/jipb.12185

Chen D, Chen M, Altmann T, Klukas C:

Bridging genomics and phenomics. In: Chen M, Hofestädt R (Eds.): Approaches in integrative bioinformatics: towards the virtual cell. Berlin [u.a.]: Springer (2014) 299-333. dx.doi.org/10.1007/978-3-642-41281-3_11 ISBN 978-3-642-41280-6

Chen D, Neumann K, Friedel S, Kilian B, Chen M, Altmann T, Klukas C:

Dissecting the phenotypic components of crop plant growth and drought responses based on high-throughput image analysis. Plant Cell 26 (2014) 4636-4655. https://dx.doi.org/10.1105/tpc.114.129601

Grafahrend-Belau E, Junker A, Schreiber F, Junker B H:

Flux balance analysis as an alternative method to estimate fluxes without labeling. (Review). In: Dieuaide-Noubhani M, Alonso A P (Eds.): Plant metabolic flux analysis: methods and protocols. (Series: Methods in molecular biology, Vol. 1090) New York [u.a.]: Humana Press (2014) 281-299. dx.doi.org/10.1007/978-1-62703-688-7_17 ISBN 978-1-62703-687-0

Harshavardhan V T, Van Son L, Seiler C, Junker A, Weigelt-Fischer K, Klukas C, Altmann T, Sreenivasulu N, Bäumlein H, Kuhlmann M:

AtRD22 and AtUSPL1, members of the plant-specific BURP domain family involved in Arabidopsis thaliana drought tolerance. PLoS One 9 (2014) e110065. https://dx.doi.org/10.1371/journal.pone.0110065

Hay J O, Shi H, Heinzel N, Hebbelmann I, Rolletschek H, Schwender J:

Integration of a constraint-based metabolic model of Brassica napus developing seeds with (13)C-metabolic flux analysis. Front. Plant Sci. 5 (2014) 724. https://dx.doi.org/10.3389/fpls.2014.00724

Heuermann M:

Characterization of the tyrosine aminotransferase gene family in Arabidopsis thaliana. (Master Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät I Biowissenschaften, Institut für Biologie (2014) 78 (+77 Anhang) pp.

Ketterer S, Hövermann D, Guebeli R J, Bartels-Burgahn F, Riewe D, Altmann T, Zurbriggen M D, Junker B, Weber W, Meier M:

Transcription factor sensor system for parallel quantification of metabolites on-chip. Anal. Chem. 86 (2014) 12152-12158. https://dx.doi.org/10.1021/ac503269m

Knoch D:

Metabolic analysis of mature Arabidopsis thaliana seeds. (Master Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät I Biowissenschaften, Institut für Biologie (2014) 88 (+100 Anhang) pp.

Krach C, Junker A, Rohn H, Schreiber F, Junker B H:

Flux visualization using VANTED/FluxMap. In: Krömer J O, Nielsen L K, Blank L M (Eds.): Metabolic flux analysis: methods and protocols. (Series: Methods in molecular biology, Vol. 1191) New York [u.a.]: Humana Press (2014) 225-233. dx.doi.org/10.1007/978-1-4939-1170-7_14 ISBN 978-1-4939-1169-1

Li P, Zhou H, Shi X, Yu B, Zhou Y, Chen S, Wang Y, Peng Y, Meyer R C, Smeekens S C, Teng S:

The ABI4-induced Arabidopsis ANAC060 transcription factor attenuates ABA signaling and renders seedlings sugar insensitive when present in the nucleus. PLoS Genet. 10 (2014) e1004213. https://dx.doi.org/10.1371/journal.pgen.1004213

Lorenz C, Rolletschek H, Sunderhaus S, Braun H P:

Brassica napus seed endosperm - metabolism and signaling in a dead end tissue. J. Proteomics 108 (2014) 382-426. https://dx.doi.org/10.1016/j.jprot.2014.05.024

Muraya M M:

Sorghum genetic diversity. In: Wang Y H, Upadhyaya H, Kole C (Eds.): Genetics, genomics and breeding of Sorghum. (Series: Genetics, genomics and breeding of crop plants) Boca Raton [u.a.]: CRC Press (2014) 114-140. ISBN 978-1-4822-1008-8

Naujoks C:

Expressionsanalysen des AT4G00310-Gens unter Einfluss eines potentiellen epistatischen QTL. (Bachelor Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät I Biowissenschaften, Institut für Biologie (2014) 29 (+18 Anhang) pp.

Radchuk V, Borisjuk L:

Physical, metabolic and developmental functions of the seed coat. Front. Plant Sci. 5 (2014) 510. https://dx.doi.org/10.3389/fpls.2014.00510

Radchuk V, Pirko Y V, Isayenkov S V, Yemets A I, Blume Y B:

cDNA library construction from meristematic tissue of finger millet panicle. Cytol. Genet. 48 (2014) 273-278. https://dx.doi.org/10.3103/S0095452714050089

Revilla P, Rodríguez V M, Ordás A, Rincent R, Charcosset A, Giauffret C, Melchinger A E, Schön C-C, Bauer E, Altmann T, Brunel D, Moreno-González J, Campo L, Ouzunova M, Laborde J, Álvarez Á, Ruíz de Galarreta J I, Malvar R A:

Cold tolerance in two large maize inbred panels adapted to European climates. Crop Sci. 54 (2014) 1981-1991. https://dx.doi.org/10.2135/cropsci2013.11.0733

Rincent R, Moreau L, Monod H, Kuhn E, Melchinger A E, Malvar R A, Moreno-Gonzalez J, Nicolas S, Madur D, Combes V, Dumas F, Altmann T, Brunel D, Ouzunova M, Flament P, Dubreuil P, Charcosset A, Mary-Huard T:

Recovering power in association mapping panels with variable levels of linkage disequilibrium. Genetics 197 (2014) 375-387. https://dx.doi.org/10.1534/genetics.113.159731

Rincent R, Nicolas S, Bouchet S, Altmann T, Brunel D, Revilla P, Malvar R A, Moreno-Gonzalez J, Campo L, Melchinger A E, Schipprack W, Bauer E, Schoen C C, Meyer N, Ouzunova M, Dubreuil P, Giauffret C, Madur D, Combes V, Dumas F, Bauland C, Jamin P, Laborde J, Flament P, Moreau L, Charcosset A:

Dent and Flint maize diversity panels reveal important genetic potential for increasing biomass production. Theor. Appl. Genet. 127 (2014) 2313-2331. https://dx.doi.org/10.1007/s00122-014-2379-7

Schwender J, König C, Klapperstück M, Heinzel N, Munz E, Hebbelmann I, Hay J O, Denolf P, de Bodt S, Redestig H, Caestecker E, Jakob P M, Borisjuk L, Rolletschek H:

Transcript abundance on its own cannot be used to infer fluxes in central metabolism. Front. Plant Sci. 5 (2014) 668. https://dx.doi.org/10.3389/fpls.2014.00668

Tran V, Weier D, Radchuk R, Thiel J, Radchuk V:

Caspase-like activities accompany programmed cell death events in developing barley grains. PLoS One 9 (2014) e109426. https://dx.doi.org/10.1371/journal.pone.0109426

Tschiersch H, Liebsch G, Borisjuk L, Stangelmayer A, Rolletschek H:

Imaging microbial culture O2 consumption: metabolic activity of E. coli monitored inside the incubator with the VisiSens™ A1. Genet. Engin. Biotechnol. News 34 (2014) 30. https://dx.doi.org/10.1089/gen.34.14.15

Venkateswaran K, Muraya M M, Dwivedi S L, Upadhyaya H D:

Wild sorghums – their potential use in crop improvement. In: Wang Y H, Upadhyaya H, Kole C (Eds.): Genetics, genomics and breeding of Sorghum. (Series: Genetics, genomics and breeding of crop plants) Boca Raton [u.a.]: CRC Press (2014) 56-89. ISBN 978-1-4822-1008-8

Wolf F:

Klonierung und Transformation einer fum2-GUS-Promotordeletionsserie in Arabidopsis thaliana. (Bachelor Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät I Biowissenschaften, Institut für Biologie (2014) 32 (+36 Anhang) pp.

2013

Bauer E, Falque M, Walter H, Bauland C, Camisan C, Campo L, Meyer N, Ranc N, Rincent R, Schipprack W, Altmann T, Flament P, Melchinger A E, Menz M, Moreno-González J, Ouzunova M, Revilla P, Charcosset A, Martin O C, Schön C C:

Intraspecific variation of recombination rate in maize. Genome Biol. 14 (2013) R103. https://dx.doi.org/10.1186/gb-2013-14-9-r103

Borisjuk L:

Looking into plant life. International Innovation 10 (2013) 79.

Borisjuk L, Neuberger T, Schwender J, Heinzel N, Sunderhaus S, Fuchs J, Hay J O, Tschiersch H, Braun H P, Denolf P, Lambert B, Jakob P M, Rolletschek H:

Seed architecture shapes embryo metabolism in oilseed rape. Plant Cell 25 (2013) 1625-1640. https://dx.doi.org/10.1105/tpc.113.111740

Borisjuk L, Rolletschek H, Jakob P:

Visualizing the feature of plant science. International Innovation 10 (2013) 80-81.

Borisjuk L, Rolletschek H, Neuberger T:

Nuclear magnetic resonance imaging of lipid in living plants. Prog. Lipid Res. 52 (2013) 465-487. https://dx.doi.org/10.1016/j.plipres.2013.05.003

Brandt R, Xie Y, Musielak T, Graeff M, Stierhof Y D, Huang H, Liu C M, Wenkel S:

Control of stem cell homeostasis via interlocking microRNA and microProtein feedback loops. Mech. Dev. 130 (2013) 25-33. https://dx.doi.org/10.1016/j.mod.2012.06.007

Fuchs J, Neuberger T, Rolletschek H, Schiebold S, Nguyen T H, Borisjuk N, Börner A, Melkus G, Jakob P, Borisjuk L:

A non-invasive platform for imaging and quantifying oil storage in sub-millimetre tobacco seed[W][OA]. Plant Physiol. 161 (2013) 583-593. https://dx.doi.org/10.1104/pp.112.210062

Grafahrend-Belau E, Junker A, Eschenröder A, Müller J, Schreiber F, Junker B H:

Multiscale metabolic modeling: dynamic flux balance analysis on a whole plant scale. Plant Physiol. 163 (2013) 637-647. https://dx.doi.org/10.1104/pp.113.224006

Gupta K J, Rolletschek H:

Plant respiratory metabolism: a special focus on the physiology of beetroot (Beta vulgaris) mitochondria. In: Neelwarne B (Ed.): Red beet biotechnology: food and pharmaceutical applications. New York [u.a.]: Springer (2013) 91-104. dx.doi.org/10.1007/978-1-4614-3458-0_5 ISBN 978-1-4614-3457-3

Hauptmann V, Weichert N, Menzel M, Knoch D, Paege N, Scheller J, Spohn U, Conrad U, Gils M:

Native-sized spider silk proteins synthesized in planta via intein-based multimerization. Transgenic Res. 22 (2013) 369-377. https://dx.doi.org/10.1007/s11248-012-9655-6

Hertig C:

Interaktionsstudien von Elementen des Zwei-Komponenten Signalsystems (TCS) aus Gerste mittels Fluoreszenzkomplementation (BiFC). (Bachelor Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät I Biowissenschaften, Institut für Biologie (2013) 41 pp.

Horn P J, Silva J E, Anderson D, Fuchs J, Borisjuk L, Nazarenus T J, Shulaev V, Cahoon E B, Chapman K D:

Imaging heterogeneity of membrane and storage lipids in transgenic Camelina sativa seeds with altered fatty acid profiles. Plant J. 76 (2013) 138-150. https://dx.doi.org/10.1111/tpj.12278

Jásik J, Boggetti B, Baluška F, Volkmann D, Gensch T, Rutten T, Altmann T, Schmelzer E:

PIN2 turnover in Arabidopsis root epidermal cells explored by the photoconvertible protein Dendra2. PLoS One 8 (2013) e61403. https://dx.doi.org/10.1371/journal.pone.0061403

Kalladan R, Worch S, Rolletschek H, Harshavardhan V T, Kuntze L, Seiler C, Sreenivasulu N, Röder M S:

Identification of quantitative trait loci contributing to yield and seed quality parameters under terminal drought in barley advanced backcross lines. Mol. Breed. 32 (2013) 71-99. https://dx.doi.org/10.1007/s11032-013-9853-9

Kempe K, Rubtsova M, Riewe D, Gils M:

The production of male-sterile wheat plants through split barnase expression is promoted by the insertion of introns and flexible peptide linkers. Transgenic Res. 22 (2013) 1089-1105. https://dx.doi.org/10.1007/s11248-013-9714-7

Kim Y M, Heinzel N, Giese J O, Koeber J, Melzer M, Rutten T, von Wirén N, Sonnewald U, Hajirezaei M-R:

A dual role of tobacco hexokinase 1 in primary metabolism and sugar sensing. Plant Cell Environ. 36 (2013) 1311-1327. https://dx.doi.org/10.1111/pce.12060

Kuhlmann M, Junker A (Eds.):

Barlomics –omic approaches in the barley field. Abstractbook of the 1st IPK Barlomics Summer School 2013. (2013) www.ipk-gatersleben.de/index.php pp.

Solbach D:

Characterization and expression of novel SWEET-like sucrose transporters in developing seeds of Arabidopsis and Pisum sativum. (Bachelor Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät I Biowissenschaften, Institut für Biologie (2013) 46 pp.

Verboven P, Herremans E, Borisjuk L, Helfen L, Ho Q T, Tschiersch H, Fuchs J, Nicolai B M, Rolletschek H:

Void space inside the developing seed of Brassica napus and the modelling of its function. New Phytol. 199 (2013) 936-947. https://dx.doi.org/10.1111/nph.12342

2012

Andorf S, Meyer R C, Selbig J, Altmann T, Repsilber D:

Integration of a systems biological network analysis and QTL results for biomass heterosis in Arabidopsis thaliana. PLoS One 7 (2012) e49951. https://dx.doi.org/10.1371/journal.pone.0049951

Boggetti B, Jasik J, Takamiya M, Strähle U, Reugels A M, Campos-Ortega J A:

NBP, a zebrafish homolog of human Kank3, is a novel Numb interactor essential for epidermal integrity and neurulation. Dev. Biol. 365 (2012) 164-174. https://dx.doi.org/10.1016/j.ydbio.2012.02.021

Borisjuk L, Rolletschek H, Neuberger T:

Surveying the plants world by magnetic resonance imaging. Plant J. 70 (2012) 129-146. https://dx.doi.org/10.1111/j.1365-313X.2012.04927.x

Burkart-Waco D, Josefsson C, Dilkes B R, Kozloff N, Törjek O, Meyer R, Altmann T, Comai L:

Hybrid incompatibility in Arabidopsis is determined by a multi-locus genetic network. Plant Physiol. 158 (2012) 801-812. https://dx.doi.org/10.1104/pp.111.188706

Faix B, Radchuk V, Nerlich A, Hümmer C, Radchuk R, Emery R J, Keller H, Götz K P, Weschke W, Geigenberger P, Weber H:

Barley grains, deficient in cytosolic small subunit of ADP-glucose pyrophosphorylase, reveal coordinate adjustment of C:N metabolism mediated by an overlapping metabolic-hormonal control. Plant J. 69 (2012) 1077-1093. https://dx.doi.org/10.1111/j.1365-313X.2011.04857.x

Horn P J, Korte A R, Neogi P B, Love E, Fuchs J, Strupat K, Borisjuk L, Shulaev V, Lee Y J, Chapman K D:

Spatial mapping of lipids at cellular resolution in embryos of cotton. Plant Cell 24 (2012) 622-636. https://dx.doi.org/10.1105/tpc.111.094581

Huang X, Effgen S, Meyer R C, Theres K, Koornneef M:

Epistatic natural allelic variation reveals a function of AGAMOUS-LIKE6 in axillary bud formation in Arabidopsis. Plant Cell 24 (2012) 2364-2379. https://dx.doi.org/10.1105/tpc.112.099168

Junker A, Bäumlein H:

Multifunctionality of the LEC1 transcription factor during plant development. Plant Signal. Behav. 7 (2012) 1718-1720. https://dx.doi.org/10.4161/psb.22365

Junker A, Junker B H:

Synthetic gene networks in plant systems. In: Weber G, Fussenegger M (Eds.): Synthetic gene networks: methods and protocols. (Series: Methods in molecular biology, Vol. 813) New York [u.a.]: Humana Press (2012) 343-258. dx.doi.org/10.1007/978-1-61779-412-4_21 ISBN 978-1-61779-411-7

Junker A, Mönke G, Rutten T, Keilwagen J, Seifert M, Thi T M, Renou J P, Balzergue S, Viehover P, Hähnel U, Ludwig-Müller J, Altschmied L, Conrad U, Weisshaar B, Bäumlein H:

Elongation-related functions of LEAFY COTYLEDON1 during the development of Arabidopsis thaliana. Plant J. 71 (2012) 427-442. https://dx.doi.org/10.1111/j.1365-313X.2012.04999.x

Junker A, Rohn H, Czauderna T, Klukas C, Hartmann A, Schreiber F:

Creating interactive, web-based and data-enriched maps with the Systems Biology Graphical Notation. Nat. Protoc. 7 (2012) 579-593. https://dx.doi.org/10.1038/nprot.2012.002

Junker A, Rohn H, Schreiber F:

Visual analysis of transcriptome data in the context of anatomical structures and biological networks. Front. Plant Sci. 3 (2012) 252. https://dx.doi.org/10.3389/fpls.2012.00252

Junker A, Sorokin A, Czauderna T, Schreiber F, Mazein A:

Wiring diagrams in biology: towards the standardized representation of biological information. Trends Biotechnol. 30 (2012) 555-557. https://dx.doi.org/10.1016/j.tibtech.2012.08.003

Kaur H, Shaker K, Heinzel N, Ralph J, Galis I, Baldwin I T:

Environmental stresses of field growth allow cinnamyl alcohol dehydrogenase-deficient Nicotiana attenuata plants to compensate for their structural deficiencies. Plant Physiol. 159 (2012) 1545-1570. https://dx.doi.org/10.1104/pp.112.196717

Lapin D, Meyer R C, Takahashi H, Bechtold U, van den Ackerveken G:

Broad-spectrum resistance of Arabidopsis C24 to downy mildew is mediated by different combinations of isolate-specific loci. New Phytol. 196 (2012) 1171-1181. https://dx.doi.org/10.1111/j.1469-8137.2012.04344.x

Meyer R C, Witucka-Wall H, Becher M, Blacha A, Boudichevskaia A, Dörmann P, Fiehn O, Friedel S, von Korff M, Lisec J, Melzer M, Repsilber D, Schmidt R, Scholz M, Selbig J, Willmitzer L, Altmann T:

Heterosis manifestation during early Arabidopsis seedling development is characterized by intermediate gene expression and enhanced metabolic activity in the hybrids. Plant J. 71 (2012) 669-683. https://dx.doi.org/10.1111/j.1365-313X.2012.05021.x

Mönke G, Seifert M, Keilwagen J, Mohr M, Grosse I, Hähnel U, Junker A, Weisshaar B, Conrad U, Bäumlein H, Altschmied L:

Toward the identification and regulation of the Arabidopsis thaliana ABI3 regulon. Nucleic Acids Res. 40 (2012) 8240-8254. https://dx.doi.org/10.1093/nar/gks594

Muraya M M, Geiger H H, Sagnard F, Toure L, Traore P C S, Togola S, de Villiers S, Parzies H K:

Adaptive values of wild × cultivated sorghum (Sorghum bicolor (L.) Moench) hybrids in generations F1, F2, and F3. Genet. Resour. Crop Evol. 59 (2012) 83-93. https://dx.doi.org/10.1007/s10722-011-9670-0

Radchuk V, Kumlehn J, Rutten T, Sreenivasulu N, Radchuk R, Rolletschek H, Herrfurth C, Feussner I, Borisjuk L:

Fertility in barley flowers depends on Jekyll functions in male and female sporophytes. New Phytol. 194 (2012) 142-157. https://dx.doi.org/10.1111/j.1469-8137.2011.04032.x

Riedelsheimer C, Czedik-Eysenberg A, Grieder C, Lisec J, Technow F, Sulpice R, Altmann T, Stitt M, Willmitzer L, Melchinger A E:

Genomic and metabolic prediction of complex heterotic traits in hybrid maize. Nat. Genet. 44 (2012) 217-220. https://dx.doi.org/10.1038/ng.1033

Riedelsheimer C, Lisec J, Czedik-Eysenberg A, Sulpice R, Flis A, Grieder C, Altmann T, Stitt M, Willmitzer L, Melchinger A E:

Genome-wide association mapping of leaf metabolic profiles for dissecting complex traits in maize. Proc. Natl. Acad. Sci. U.S.A. 109 (2012) 8872-8877. https://dx.doi.org/10.1073/pnas.1120813109

Riewe D, Koohi M, Lisec J, Pfeiffer M, Lippmann R, Schmeichel J, Willmitzer L, Altmann T:

A tyrosine aminotransferase involved in tocopherol synthesis in Arabidopsis. Plant J. 71 (2012) 850-859. https://dx.doi.org/10.1111/j.1365-313X.2012.05035.x

Rincent R, Laloë D, Nicolas S, Altmann T, Brunel D, Revilla P, Rodriguez V M, Moreno-Gonzales J, Melchinger A E, Bauer E, Schön C C, Meyer N, Giauffret C, Bauland C, Jamin P, Laborde J, Monod H, Flament P, Charcosset A, Moreau L:

Maximizing the reliability of genomic selection by optimizing the calibration set of reference individuals: Comparison of methods in two diverse groups of maize inbreds (Zea mays L.). Genetics 192 (2012) 715-728. https://dx.doi.org/10.1534/genetics.112.141473

Rohn H, Hartmann A, Junker A, Junker B H, Schreiber F:

FluxMap: A VANTED add-on for the visual exploration of flux distributions in biological networks. BMC Syst. Biol. 6 (2012) 33. https://dx.doi.org/10.1186/1752-0509-6-33

Rohn H, Junker A, Hartmann A, Grafahrend-Belau E, Treutler H, Klapperstück M, Czauderna T, Klukas C, Schreiber F:

VANTED v2: a framework for systems biology applications. BMC Syst. Biol. 6 (2012) 139. https://dx.doi.org/10.1186/1752-0509-6-139

Rolletschek H:

Hypoxia – a phenomenon which shapes seed metabolism. (Habilitation Thesis) Hannover, Leibniz Universität Hannover, Naturwissenschaftliche Fakultät (2012) 286 pp.

Schreiber F, Colmsee C, Czauderna T, Grafahrend-Belau E, Hartmann A, Junker A, Junker B H, Klapperstück M, Scholz U, Weise S:

MetaCrop 2.0: managing and exploring information about crop plant metabolism. Nucleic Acids Res. 40 (2012) D1173-D1177. https://dx.doi.org/10.1093/nar/gkr1004

Schreiber F, Colmsee C, Czauderna T, Grafahrend-Belau E, Hartmann A, Junker A, Junker B H, Koschützki D, Scholz U, Weise S:

MetaCrop 2.0. metacrop.ipk-gatersleben.de (2012).

Thiel J, Riewe D, Rutten T, Melzer M, Friedel S, Bollenbeck F, Weschke W, Weber H:

Differentiation of endosperm transfer cells of barley - a comprehensive analysis at the micro-scale. Plant J. 71 (2012) 639-655. https://dx.doi.org/10.1111/j.1365-313X.2012.05018.x

Todesco M, Balasubramanian S, Cao J, Ott F, Sureshkumar S, Schneeberger K, Meyer R C, Altmann T, Weigel D:

Natural variation in biogenesis efficiency of individual Arabidopsis thaliana microRNAs. Curr. Biol. 22 (2012) 166-170. https://dx.doi.org/10.1016/j.cub.2011.11.060

Tschiersch H, Liebsch G, Borisjuk L, Stangelmayer A, Rolletschek H:

An imaging method for oxygen distribution, respiration and photosynthesis at a microscopic level of resolution. New Phytol. 196 (2012) 926-936. https://dx.doi.org/10.1111/j.1469-8137.2012.04295.x

Wan Y, Jasik J, Wang L, Hao H, Volkmann D, Menzel D, Mancuso S, Baluška F, Lin J:

The signal transducer NPH3 integrates the Phototropin1 photosensor with PIN2-based polar auxin transport in Arabidopsis root phototropism. Plant Cell 24 (2012) 551-565. https://dx.doi.org/10.1105/tpc.111.094284

Weber C:

Analysen der natürlichen Variabilität der Effizienz der Stickstoffnutzung in Arabidopsis thaliana. (Diploma Thesis) Magdeburg, Otto-von-Guericke Universität Magdeburg, Fakultät für Verfahrens- und Systemtechnik (2012) 76 pp.

Zaynali Nezhad K, Weber W E, Röder M S, Sharma S, Lohwasser U, Meyer R C, Saal B, Börner A:

QTL analysis for thousand-grain weight under terminal drought stress in bread wheat. Euphytica 186 (2012) 127-138. https://dx.doi.org/10.1007/s10681-011-0559-y

2011

Altmann T:

Zugang zu neuen FuE-Konzepten durch innovative Verfahren der Pflanzenphänotypisierung. In: Schumann G, Stephan C, Harring G (Eds.): Erstes Symposium Zierpflanzenzüchtung (15.-16.11.2011, Quedlinburg), Proceedings. (Series: Julius-Kühn-Archiv, Julius-Kühn-Institut, Bundesanstalt für Kulturpflanzen, Vol. 433) Berlin: Arno Brynda GmbH (2011) 40-45. ISBN 978-3-930037-83-4

Borisjuk L, Rolletschek H, Fuchs J, Melkus G, Neuberger T:

Low and high field magnetic resonance for in vivo analysis of seeds. Materials 4 (2011) 1426-1439. https://dx.doi.org/10.3390/ma4081426

Brotman Y, Riewe D, Lisec J, Meyer R C, Willmitzer L, Altmann T:

Identification of enzymatic and regulatory genes of plant metabolism through QTL analysis in Arabidopsis. J. Plant Physiol. 168 (2011) 1387-1394. https://dx.doi.org/10.1016/j.jplph.2011.03.008

Cornelius S, Witz S, Rolletschek H, Möhlmann T:

Pyrimidine degradation influences germination seedling growth and production of Arabidopsis seeds. J. Exp. Bot. 62 (2011) 5623-5632. https://dx.doi.org/10.1093/jxb/err251

Hädrich N, Gibon Y, Schudoma C, Altmann T, Lunn J E, Stitt M:

Use of TILLING and robotised enzyme assays to generate an allelic series of Arabidopsis thaliana mutants with altered ADP-glucose pyrophosphorylase activity. J. Plant Physiol. 168 (2011) 1395-1405. https://dx.doi.org/10.1016/j.jplph.2011.01.013

Hayden D M, Rolletschek H, Borisjuk L, Corwin J, Kliebenstein D J, Grimberg A, Stymne S, Dehesh K:

Cofactome analyses reveal enhanced flux of carbon into oil for potential biofuel production. Plant J. 67 (2011) 1018-1028. https://dx.doi.org/10.1111/j.1365-313X.2011.04654.x

Hölzle A, Jonietz C, Törjek O, Altmann T, Binder S, Forner J:

A RESTORER OF FERTILITY-like PPR gene is required for 5-end processing of the nad4 mRNA in mitochondria of Arabidopsis thaliana. Plant J. 65 (2011) 737-744. https://dx.doi.org/10.1111/j.1365-313X.2010.04460.x

Jasik J, Schiebold S, Rolletschek H, Denolf P, Van Adenhove K, Altmann T, Borisjuk L:

Subtissue-specific evaluation of promoter efficiency by quantitative fluorometric assay in laser microdissected tissues of rapeseed. Plant Physiol. 157 (2011) 563-573. https://dx.doi.org/10.1104/pp.111.180760

Melkus G, Rolletschek H, Fuchs J, Radchuk V, Grafahrend-Belau E, Sreenivasulu N, Rutten T, Weier D, Heinzel N, Schreiber F, Altmann T, Jakob P M, Borisjuk L:

Dynamic (13) C/(1) H NMR imaging uncovers sugar allocation in the living seed. Plant Biotechnol. J. 9 (2011) 1022-1037. https://dx.doi.org/10.1111/j.1467-7652.2011.00618.x

Muraya M M, de Villiers S, Parzies H K, Mutegi E, Sagnard F, Kanyenji B M, Kiambi D, Geiger H H:

Genetic structure and diversity of wild sorghum populations (Sorghum spp.) from different eco-geographical regions of Kenya. Theor. Appl. Genet. 123 (2011) 571-583. https://dx.doi.org/10.1007/s00122-011-1608-6

Muraya M M, Geiger H H, de Villiers S, Sagnard F, Kanyenji B M, Kiambi D, Parzies H K:

Investigation of pollen competition between wild and cultivated sorghums (Sorghum bicolor (L.) Moench) using simple sequence repeats markers. Euphytica 178 (2011) 393-401. https://dx.doi.org/10.1007/s10681-010-0319-4

Muraya M M, Mutegi E, Geiger H H, de Villiers S M, Sagnard F, Kanyenji B M, Kiambi D, Parzies H K:

Wild sorghum from different eco-geographic regions of Kenya display a mixed mating system. Theor. Appl. Genet. 122 (2011) 1631-1639. https://dx.doi.org/10.1007/s00122-011-1560-5

Mutegi E, Sagnard F, Semagn K, Deu M, Muraya M, Kanyenji B, de Villiers S, Kiambi D, Herselman L, Labuschagne M:

Genetic structure and relationships within and between cultivated and wild sorghum (Sorghum bicolor (L.) Moench) in Kenya as revealed by microsatellite markers. Theor. Appl. Genet. 122 (2011) 989-1004. https://dx.doi.org/10.1007/s00122-010-1504-5

Rolletschek H, Melkus G, Grafahrend-Belau E, Fuchs J, Heinzel N, Schreiber F, Jakob P M, Borisjuk L:

Combined noninvasive imaging and modeling approaches reveal metabolic compartmentation in the barley endosperm. Plant Cell 23 (2011) 3041-3054. https://dx.doi.org/10.1105/tpc.111.087015

Schiebold S, Tschiersch H, Borisjuk L, Heinzel N, Radchuk R, Rolletschek H:

A novel procedure for the quantitative analysis of metabolites, storage products and transcripts of laser microdissected seed tissues of Brassica napus. Plant Methods 7 (2011) 19. https://dx.doi.org/10.1186/1746-4811-7-19

Seiler C, Harshavardhan V T, Kalladan R, Reddy P S, Strickert M, Rolletschek H, Scholz U, Wobus U, Sreenivasulu N:

ABA biosynthesis and degradation contributing to ABA homeostasis during barley seed development under control and terminal drought-stress conditions. J. Exp. Bot. 62 (2011) 2615-2632. https://dx.doi.org/10.1093/jxb/erq446

Thiel J, Rolletschek H, Friedel S, Lunn J E, Nguyen T H, Feil R, Tschiersch H, Müller M, Borisjuk L:

Seed-specific elevation of non-symbiotic hemoglobin AtHb1: beneficial effects and underlying molecular networks in Arabidopsis thaliana. BMC Plant Biol. 11 (2011) 48. https://dx.doi.org/10.1186/1471-2229-11-48

Tschiersch H, Borisjuk L, Rutten T, Rolletschek H:

Gradients of seed photosynthesis and its role for oxygen balancing. Biosystems 103 (2011) 302-308. https://dx.doi.org/10.1016/j.biosystems.2010.08.007

Tschiersch H, Liebsch G, Stangelmayer A, Borisjuk L, Rolletschek H:

Planar oxygen sensors for non invasive imaging in experimental biology. In: Minin I (Ed.): Microsensors. InTech (2011) 281-294. ISBN 978-953-307-170-1

2010

Altmann T:

Plant Genes Matter – integrative plant research for future needs. Publ. Serv. Rev.: Sci Technol 8 (2010) 198-199.

Andorf S, Selbig J, Altmann T, Poos K, Witucka-Wall H, Repsilber D:

Enriched partial correlations in genome-wide gene expression profiles of hybrids (A. thaliana): a systems biological approach towards the molecular basis of heterosis. Theor. Appl. Genet. 120 (2010) 249-259. https://dx.doi.org/10.1007/s00122-009-1214-z

Bechtold U, Lawson T, Mejia-Carranza J, Meyer R C, Brown I R, Altmann T, Ton J, Mullineaux P M:

Constitutive salicylic acid defences do not compromise seed yield, drought tolerance and water productivity in the Arabidopsis accession C24. Plant Cell Environ. 33 (2010) 1959-1973. https://dx.doi.org/10.1111/j.1365-3040.2010.02198.x

Childs L H, Witucka-Wall H, Günther T, Sulpice R, Korff M V, Stitt M, Walther D, Schmid K J, Altmann T:

Single feature polymorphism (SFP)-based selective sweep identification and association mapping of growth-related metabolic traits in Arabidopsis thaliana. BMC Genomics 11 (2010) 188. https://dx.doi.org/10.1186/1471-2164-11-188

Geigenberger P, Riewe D, Fernie A R:

The central regulation of plant physiology by adenylates. Trends Plant Sci. 15 (2010) 98-105. https://dx.doi.org/10.1016/j.tplants.2009.11.004

Ho Q T, Verboven P, Verlinden B E, Schenk A, Delele M A, Rolletschek H, Vercammen J, Nicolai B M:

Genotype effects on internal gas gradients in apple fruit. J. Exp. Bot. 61 (2010) 2745-2755. https://dx.doi.org/10.1093/jxb/erq108

Kaur H, Heinzel N, Schottner M, Baldwin I T, Galis I:

R2R3-NaMYB8 regulates the accumulation of phenylpropanoid-polyamine conjugates, which are essential for local and systemic defense against insect herbivores in Nicotiana attenuata. Plant Physiol. 152 (2010) 1731-1747. https://dx.doi.org/10.1104/pp.109.151738

Knecht K, Seyffarth M, Desel C, Thurau T, Sherameti I, Lou B, Oelmüller R, Cai D:

Expression of BvGLP-1 encoding a germin-like protein from sugar beet in Arabidopsis thaliana leads to resistance against phytopathogenic fungi. Mol. Plant Microbe Interact. 23 (2010) 446-457. https://dx.doi.org/10.1094/MPMI-23-4-0446

Massonnet C, Vile D, Fabre J, Hannah M A, Caldana C, Lisec J, Beemster G T S, Meyer R C, Messerli G, Gronlund J T, Perkovic J, Wigmore E, May S, Bevan M W, Meyer C, Rubio-Diaz S, Weigel D, Micol J L, Buchanan-Wollaston V, Fiorani F, Walsh S, Rinn B, Gruissem W, Hilson P, Hennig L, Willmitzer L, Granier C:

Probing the reproducibility of leaf growth and molecular phenotypes: A comparison of three Arabidopsis accessions cultivated in ten laboratories. Plant Physiol. 152 (2010) 2142-2157. https://dx.doi.org/10.1104/pp.109.148338

Meyer R C, Kusterer B, Lisec J, Steinfath M, Becher M, Scharr H, Melchinger A E, Selbig J, Schurr U, Willmitzer L, Altmann T:

QTL analysis of early stage heterosis for biomass in Arabidopsis. Theor. Appl. Genet. 120 (2010) 227-237. https://dx.doi.org/10.1007/s00122-009-1074-6

Muraya M M, Hartwig H, Geiger H H, Mutegi E, Kanyenji B, Sagnard F, De Villiers S, Kiambi D, Parzies H K:

Geographical patterns of phenotypic diversity and structure of Kenyan wild sorghum populations (Sorghum spp) as an aid to germplasm collection and conservation strategy. Plant Genet. Resour. 8 (2010) 217-224. https://dx.doi.org/10.1017/S1479262110000225

Muraya M M, Sagnard F, Parzies H K:

Investigation of recent population bottlenecks in Kenyan wild sorghum populations (Sorghum bicolor (L.) Moench ssp. verticilliflorum (Steud.) De Wet) based on microsatellite diversity and genetic disequilibria. Genet. Resour. Crop Evol. 57 (2010) 995–1005. https://dx.doi.org/10.1007/s10722-010-9539-7

Mutegi E, Sagnard F, Muraya M, Kanyenji B, Rono B, Mwongera C, Marangu C, Kamau J, Parzies H, de Villiers S, Semagn K, Traoré P S, Labuschagne M:

Ecogeographical distribution of wild, weedy and cultivated Sorghum bicolor (L.) Moench in Kenya: implications for conservation and crop-to-wild gene flow. Genet. Resour. Crop Evol. 57 (2010) 243-253. https://dx.doi.org/10.1007/s10722-009-9466-7

Sreenivasulu N, Borisjuk L, Junker B H, Mock H-P, Rolletschek H, Seiffert U, Weschke W, Wobus U:

Barley grain development toward an integrative view. Int. Rev. Cell Mol. Biol. 281 (2010) 49-89. https://dx.doi.org/10.1016/S1937-6448(10)81002-0

Sreenivasulu N, Radchuk V, Alawady A, Borisjuk L, Weier D, Staroske N, Fuchs J, Miersch O, Strickert M, Usadel B, Wobus U, Grimm B, Weber H, Weschke W:

De-regulation of abscisic acid contents causes abnormal endosperm development in the barley mutant seg8. Plant J. 64 (2010) 589-603. https://dx.doi.org/10.1111/j.1365-313X.2010.04350.x

Steinfath M, Gärtner T, Lisec J, Meyer R C, Altmann T, Willmitzer L, Selbig J:

Prediction of hybrid biomass in Arabidopsis thaliana by selected parental SNP and metabolic markers. Theor. Appl. Genet. 120 (2010) 239-247. https://dx.doi.org/10.1007/s00122-009-1191-2

Sulpice R, Trenkamp S, Steinfath M, Usadel B, Gibon Y, Witucka-Wall H, Pyl E T, Tschoep H, Steinhauser M C, Guenther M, Hoehne M, Rohwer J M, Altmann T, Fernie A R, Stitt M:

Network analysis of enzyme activities and metabolite levels and their relationship to biomass in a large panel of Arabidopsis accessions. Plant Cell 22 (2010) 2872-2893. https://dx.doi.org/10.1105/tpc.110.076653

Weigelt K:

Transkriptionelle und biochemische Untersuchungen des veränderten Stickstoff- und Kohlenstoffmetabolismus in genetisch modifizierten Erbsensamen. (PhD Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Institut für Biologie (2010) 237 pp.

2009

Ahkami A H, Lischewski S, Haensch K T, Porfirova S, Hofmann J, Rolletschek H, Melzer M, Franken P, Hause B, Druege U, Hajirezaei M-R:

Molecular physiology of adventitious root formation in Petunia hybrida cuttings: involvement of wound response and primary metabolism. New Phytol. 181 (2009) 613-625. https://dx.doi.org/10.1111/j.1469-8137.2008.02704.x

Andorf S, Gärtner T, Steinfath M, Witucka-Wall H, Altmann T, Repsilber D:

Towards systems biology of heterosis: A hypothesis about molecular network structure applied for the Arabidopsis metabolome. EURASIP J. Bioinform. Syst. Biol. (2009) 147157. dx.doi.org/10.1155/2009/147157

Borisjuk L, Rolletschek H:

The oxygen status of the developing seed. New Phytol. 182 (2009) 17-30. https://dx.doi.org/10.1111/j.1469-8137.2008.02752.x

Ganal M W, Altmann T, Röder M S:

SNP identification in crop plants. Curr. Opin. Plant Biol. 12 (2009) 211-217. https://dx.doi.org/10.1016/j.pbi.2008.12.009

Gärtner T, Steinfath M, Andorf S, Lisec J, Meyer R C, Altmann T, Willmitzer L, Selbig J:

Improved heterosis prediction by combining information on DNA- and metabolic markers. PLoS One 4 (2009) e5220. https://dx.doi.org/10.1371/journal.pone.0005220

Lisec J, Steinfath M, Meyer R C, Selbig J, Melchinger A E, Willmitzer L, Altmann T:

Identification of heterotic metabolite QTL in Arabidopsis thaliana RIL and IL populations. Plant J. 59 (2009) 777-788. https://dx.doi.org/10.1111/j.1365-313X.2009.03910.x

Melkus G, Rolletschek H, Radchuk R, Fuchs J, Rutten T, Wobus U, Altmann T, Jakob P, Borisjuk L:

The metabolic role of the legume endosperm: a noninvasive imaging study. Plant Physiol. 151 (2009) 1139-1154. https://dx.doi.org/10.1104/pp.109.143974

Neuberger T, Rolletschek H, Webb A, Borisjuk L:

Non-invasive mapping of lipids in plant tissue using magnetic resonance imaging. In: Armstrong D (Ed.): Lipidomics, Vol. 1, methods and protocols. (Series: Methods in molecular biology, Vol. 579) New York, NY: Humana Press (2009) 485-496. dx.doi.org/10.1007/978-1-60761-322-0_24 ISBN 978-1-607-61321-3

Radchuk V V, Borisjuk L, Sreenivasulu N, Merx K, Mock H-P, Rolletschek H, Wobus U, Weschke W:

Spatiotemporal profiling of starch biosynthesis and degradation in the developing barley grain. Plant Physiol. 150 (2009) 190-204. https://dx.doi.org/10.1104/pp.108.133520

Reif J C, Kusterer B, Piepho H P, Meyer R C, Altmann T, Schön C C, Melchinger A E:

Unraveling epistasis with triple testcross progenies of near-isogenic lines. Genetics 181 (2009) 247-257. https://dx.doi.org/10.1534/genetics.108.093047

Rolletschek H, Stangelmayer A, Borisjuk L:

Methodology and significance of microsensor-based oxygen mapping in plant seeds - an overview. Sensors 9 (2009) 3218-3227. https://dx.doi.org/10.3390/s90503218

Sulpice R, Pyl E T, Ishihara H, Trenkamp S, Steinfath M, Witucka-Wall H, Gibon Y, Usadel B, Poree F, Piques M C, Von Korff M, Steinhauser M C, Keurentjes J J, Guenther M, Hoehne M, Selbig J, Fernie A R, Altmann T, Stitt M:

Starch as a major integrator in the regulation of plant growth. Proc. Natl. Acad. Sci. U. S. A. 106 (2009) 10348-10353. https://dx.doi.org/10.1073/pnas.0903478106

Weigelt K, Küster H, Rutten T, Fait A, Fernie A R, Miersch O, Wasternack C, Emery R J, Desel C, Hosein F, Müller M, Saalbach I, Weber H:

ADP-glucose pyrophosphorylase-deficient Pea embryos reveal specific transcriptional and metabolic changes of carbon-nitrogen metabolism and stress responses. Plant Physiol. 149 (2009) 395-411. https://dx.doi.org/10.1104/pp.108.129940

2008

Balazadeh S, Parlitz S, Mueller-Roeber B, Meyer R C:

Natural developmental variations in leaf and plant senescence in Arabidopsis thaliana. Plant Biol. 10 (2008) 136-147. https://dx.doi.org/10.1111/j.1438-8677.2008.00108.x

Benamar A, Rolletschek H, Borisjuk L, Avelange-Macherel M H, Curien G, Mostefai H A, Andriantsitohaina R, Macherel D:

Nitrite-nitric oxide control of mitochondrial respiration at the frontier of anoxia. Biochim. Biophys. Acta 1777 (2008) 1268-1275. https://dx.doi.org/10.1016/j.bbabio.2008.06.002

Borisjuk L, Rolletschek H:

Nitric oxide is a versatile sensor of low oxygen stress in plants. Plant Signal. Behav. 3 (2008) 391-393. https://dx.doi.org/10.4161/psb.3.6.5403

Forner J, Hölzle A, Jonietz C, Thuss S, Schwarzländer M, Weber B, Meyer R C, Binder S:

Mitochondrial mRNA polymorphisms in different Arabidopsis thaliana accessions. Plant Physiol. 148 (2008) 1106-1116. https://dx.doi.org/10.1104/pp.108.126201

Lisec J, Meyer R C, Steinfath M, Redestig H, Becher M, Witucka-Wall H, Fiehn O, Törjék O, Selbig J, Altmann T, Willmitzer L:

Identification of metabolic and biomass QTL in Arabidopsis thaliana in a parallel analysis of RIL and IL populations. Plant J. 53 (2008) 960-972. https://dx.doi.org/10.1111/j.1365-313X.2007.03383.x

Neuberger T, Sreenivasulu N, Rokitta M, Rolletschek H, Göbel C, Rutten T, Radchuk V, Feussner I, Wobus U, Jakob P, Webb A, Borisjuk L:

Quantitative imaging of oil storage in developing crop seeds. Plant Biotechnol. J. 6 (2008) 31-45. https://dx.doi.org/10.1111/j.1467-7652.2007.00294.x

Rautengarten C, Usadel B, Neumetzler L, Hartmann J, Büssis D, Altmann T:

A subtilisin-like serine protease essential for mucilage release from Arabidopsis seed coats. Plant J. 54 (2008) 466-480. https://dx.doi.org/10.1111/j.1365-313X.2008.03437.x

Riewe D, Grosman L, Fernie A R, Wucke C, Geigenberger P:

The potato-specific apyrase is apoplastically localized and has influence on gene expression, growth, and development. Plant Physiol. 147 (2008) 1092-1109. https://dx.doi.org/10.1104/pp.108.117564

Riewe D, Grosman L, Fernie A R, Zauber H, Wucke C, Geigenberger P:

A cell wall-bound adenosine nucleosidase is involved in the salvage of extracellular ATP in Solanum tuberosum. Plant Cell Physiol. 49 (2008) 1572-1579. https://dx.doi.org/10.1093/pcp/pcn127

Riewe D, Grosman L, Zauber H, Wucke C, Fernie A R, Geigenberger P:

Metabolic and developmental adaptations of growing potato tubers in response to specific manipulations of the adenylate energy status. Plant Physiol. 146 (2008) 1579-1598. https://dx.doi.org/10.1104/pp.108.115758

Tiedemann J, Rutten T, Mönke G, Vorwieger A, Rolletschek H, Meissner D, Milkowski C, Petereck S, Mock H-P, Zank T, Bäumlein H:

Dissection of a complex seed phenotype: novel insights of FUSCA3 regulated developmental processes. Dev. Biol. 317 (2008) 1-12. https://dx.doi.org/10.1016/j.ydbio.2008.01.034

Törjek O, Meyer R C, Zehnsdorf M, Teltow M, Strompen G, Witucka-Wall H, Blacha A, Altmann T:

Construction and analysis of 2 reciprocal Arabidopsis introgression line populations. J. Hered. 99 (2008) 396-406. https://dx.doi.org/10.1093/jhered/esn014

Ülker B, Li Y, Rosso M G, Logemann E, Somssich I E, Weisshaar B:

T-DNA-mediated transfer of Agrobacterium tumefaciens chromosomal DNA into plants. Nat. Biotechnol. 26 (2008) 1015-1017. https://dx.doi.org/10.1038/nbt.1491

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