Ahmadli U, Kalidass M, Crhak Khaitova L, Fuchs J, Cuacos M, Demidov D, Zuo S, Pecinkova J, Mascher M, Ingouff M, Heckmann S, Houben A, Riha K, Lermontova I:

High temperature increases centromere-mediated genome elimination frequency and enhances haploid induction in Arabidopsis. Plant Commun. 4 (2023) 100507. https://dx.doi.org/10.1016/j.xplc.2022.100507

Brodführer S, Mohler V, Stadlmeier M, Okoń S, Beuch S, Mascher M, Tinker N A, Bekele W A, Hackauf B, Herrmann M H:

Genetic mapping of the powdery mildew resistance gene Pm7 on oat chromosome 5D. Theor. Appl. Genet. 136 (2023) 53. https://dx.doi.org/10.1007/s00122-023-04288-z

Câmara A S, Kubalová I, Schubert V:

Helical chromonema coiling is conserved in eukaryotes. Plant J. (2023) Epub ahead of print. https://dx.doi.org/10.1111/tpj.16484

Câmara A S, Mascher M:

Consistencies and contradictions in different polymer models of chromatin architecture. Comput. Struct. Biotechnol. J. 21 (2023) 1084-1091. https://dx.doi.org/10.1016/j.csbj.2023.01.033

Daszkowska-Golec A, Mascher M, Zhang R:

Editorial: Applications of long-read sequencing in plant genomics and transcriptomics. Front. Plant Sci. 14 (2023) 1141429. https://dx.doi.org/10.3389/fpls.2023.1141429

El Hanafi S, Jiang Y, Kehel Z, Schulthess A W, Zhao Y, Mascher M, Haupt M, Himmelbach A, Stein N, Amri A, Reif J C:

Genomic predictions to leverage phenotypic data across genebanks. Front. Plant Sci. 14 (2023) 1227656. https://dx.doi.org/10.3389/fpls.2023.1227656

Feng J-W, Mascher M:

The story of wheat and its cousins. Nat. Plants 9 (2023) 377-378. https://dx.doi.org/10.1038/s41477-023-01365-5

Huang Y, Kamal R, Shanmugaraj N, Rutten T, Thirulogachandar V, Zhao S, Hoffie I, Hensel G, Rajaraman J, Moya Y A T, Hajirezaei M-R, Himmelbach A, Poursarebani N, Lundqvist U, Kumlehn J, Stein N, von Wirén N, Mascher M, Melzer M, Schnurbusch T:

A molecular framework for grain number determination in barley. Sci. Adv. 9 (2023) eadd0324. https://dx.doi.org/10.1126/sciadv.add0324

Jayakodi M, Golicz A A, Kreplak J, Fechete L I, Angra D, Bednář P, Bornhofen E, Zhang H, Boussageon R, Kaur S, Cheung K, Čížková J, Gundlach H, Hallab A, Imbert B, Keeble-Gagnère G, Koblížková A, Kobrlová L, Krejčí P, Mouritzen T W, Neumann P, Nadzieja M, Nielsen L K, Novák P, Orabi J, Padmarasu S, Robertson-Shersby-Harvie T, Robledillo L Á, Schiemann A, Tanskanen J, Törönen P, Warsame A O, Wittenberg A H J, Himmelbach A, Aubert G, Courty P-E, Doležel J, Holm L U, Janss L L, Khazaei H, Macas J, Mascher M, Smýkal P, Snowdon R J, Stein N, Stoddard F L, Stougaard J, Tayeh N, Torres A M, Usadel B, Schubert I, OSullivan D M, Schulman A H, Andersen S U:

The giant diploid faba genome unlocks variation in a global protein crop. Nature 615 (2023) 652-659. https://dx.doi.org/10.1038/s41586-023-05791-5

König P, Beier S, Mascher M, Stein N, Lange M, Scholz U:

DivBrowse—interactive visualization and exploratory data analysis of variant call matrices. GigaScience 12 (2023) giad025. https://dx.doi.org/10.1093/gigascience/giad025

Kubalová I, Câmara A S, Cápal P, Beseda T, Rouillard J-M, Krause Gina M, Holušová K, Toegelová H, Himmelbach A, Stein N, Houben A, Doležel J, Mascher M, Šimková H, Schubert V:

Helical coiling of metaphase chromatids. Nucleic Acids Res. 51 (2023) 2641–2654. https://dx.doi.org/10.1093/nar/gkad028

Kudapa H, Ghatak A, Barmukh R, Chaturvedi P, Khan A, Kale S, Fragner L, Chitikineni A, Weckwerth W, Varshney R K:

Integrated multi-omics analysis reveals drought stress response mechanism in chickpea (Cicer arietinum L.). Plant Genome (2023) Epub ahead of print. https://dx.doi.org/10.1002/tpg2.20337

Kuo Y-T, Câmara A S, Schubert V, Neumann P, Macas J, Melzer M, Chen J, Fuchs J, Abel S, Klocke E, Huettel B, Himmelbach A, Demidov D, Dunemann F, Mascher M, Ishii T, Marques A, Houben A:

Holocentromeres can consist of merely a few megabase-sized satellite arrays. Nat. Commun. 14 (2023) 3502. https://dx.doi.org/10.1038/s41467-023-38922-7

Ost C, Cao H X, Nguyen T L, Himmelbach A, Mascher M, Stein N, Humbeck K:

Drought-stress-related reprogramming of gene expression in barley involves differential histone modifications at ABA-related genes. Int. J. Mol. Sci. 24 (2023) 12065. https://dx.doi.org/10.3390/ijms241512065

Shanmugaraj N, Rajaraman J, Kale S, Kamal R, Huang Y, Thirulogachandar V, Garibay-Hernandez A, Budhagatapalli N, Tandron Moya Y A, Hajirezaei M R, Rutten T, Hensel G, Melzer M, Kumlehn J, von Wirén N, Mock H-P, Schnurbusch T:

Multilayered regulation of developmentally programmed pre-anthesis tip degeneration of the barley inflorescence. Plant Cell 35 (2023) 3973–4001. https://dx.doi.org/10.1093/plcell/koad164

Acevedo-Garcia J, Walden K, Leissing F, Baumgarten K, Drwiega K, Kwaaitaal M, Reinstädler A, Freh M, Dong X, James G V, Baus L C, Mascher M, Stein N, Schneeberger K, Brocke-Ahmadinejad N, Kollmar M, Schulze-Lefert P, Panstruga R:

Barley Ror1 encodes a class XI myosin required for mlo-based broad-spectrum resistance to the fungal powdery mildew pathogen. Plant J. 112 (2022) 84-103. https://dx.doi.org/10.1111/tpj.15930

Avni R, Lux T, Minz-Dub A, Millet E, Sela H, Distelfeld A, Deek J, Yu G, Steuernagel B, Pozniak C, Ens J, Gundlach H, Mayer K F X, Himmelbach A, Stein N, Mascher M, Spannagl M, Wulff B B H, Sharon A:

Genome sequences of three Aegilops species of the section Sitopsis reveal phylogenetic relationships and provide resources for wheat improvement. Plant J. 110 (2022) 179-192. https://dx.doi.org/10.1111/tpj.15664

Chang C-W, Fridman E, Mascher M, Himmelbach A, Schmid K:

Physical geography, isolation by distance and environmental variables shape genomic variation of wild barley (Hordeum vulgare L. ssp. spontaneum) in the Southern Levant. Heredity 128 (2022) 107–119. https://dx.doi.org/10.1038/s41437-021-00494-x

Demidov D, Lermontova I, Moebes M, Kochevenko A, Fuchs J, Weiss O, Rutten T, Sorge E, Zuljan E, Giehl R F H, Mascher M, Somasundaram S, Conrad U, Houben A:

Haploid induction by nanobody targeted ubiquitin-proteasome-based degradation of EYFP-tagged CENH3 in Arabidopsis thaliana. J. Exp. Bot. 73 (2022) 7243–7254. https://dx.doi.org/10.1093/jxb/erac359

Dinh H X, Singh D, Gomez de la Cruz D, Hensel G, Kumlehn J, Mascher M, Stein N, Perovic D, Ayliffe M, Moscou M J, Park R F, Pourkheirandish M:

The barley leaf rust resistance gene Rph3 encodes a predicted membrane protein and is induced upon infection by avirulent pathotypes of Puccinia hordei. Nat. Commun. 13 (2022) 2386. https://dx.doi.org/10.1038/s41467-022-29840-1

Dreissig S, Mascher M:

Cherish your weeds. Mol. Plant 15 (2022) 396-397. https://dx.doi.org/10.1016/j.molp.2022.01.021

Fusi R, Rosignoli S, Lou H, Sangiorgi G, Bovina R, Pattem J K, Borkar A N, Lombardi M, Forestan C, Milner S G, Davis J L, Lale A, Kirschner G K, Swarup R, Tassinari A, Pandey B K, York L M, Atkinson B S, Sturrock C J, Mooney S J, Hochholdinger F, Tucker M R, Himmelbach A, Stein N, Mascher M, Nagel K A, de Gara L, Simmonds J, Uauy C, Tuberosa R, Lynch J P, Yakubov G E, Bennett M J, Bhosale R, Salvi S:

Root angle is controlled by EGT1 in cereal crops employing a novel anti-gravitropic mechanism. Proc. Natl. Acad. Sci. U.S.A. 119 (2022) e2201350119. https://dx.doi.org/10.1073/pnas.2201350119

Garg V, Dudchenko O, Wang J, Khan A W, Gupta S, Kaur P, Han K, Saxena R K, Kale S M, Pham M, Yu J, Chitikineni A, Zhang Z, Fan G, Lui C, Valluri V, Meng F, Bhandari A, Liu X, Yang T, Chen H, Valliyodan B, Roorkiwal M, Shi C, Yang H B, Durand N C, Pandey M K, Li G, Barmukh R, Wang X, Chen X, Lam H-M, Jiang H, Zong X, Liang X, Liu X, Liao B, Guo B, Jackson S, Nguyen H T, Zhuang W, Shubo W, Wang X, Aiden E L, Bennetzen J L, Varshney R K:

Chromosome-length genome assemblies of six legume species provide insights into genome organization, evolution, and agronomic traits for crop improvement. J. Adv. Res. 42 (2022) 315-329. https://dx.doi.org/10.1016/j.jare.2021.10.009

Gaurav K, Arora S, Silva P, Sanchez-Martin J, Horsnell R, Gao L, Brar G S, Widrig V, John Raupp W, Singh N, Wu S, Kale S M, Chinoy C, Nicholson P, Quiroz-Chavez J, Simmonds J, Hayta S, Smedley M A, Harwood W, Pearce S, Gilbert D, Kangara N, Gardener C, Forner-Martinez M, Liu J, Yu G, Boden S A, Pascucci A, Ghosh S, Hafeez A N, OHara T, Waites J, Cheema J, Steuernagel B, Patpour M, Justesen A F, Liu S, Rudd J C, Avni R, Sharon A, Steiner B, Kirana R P, Buerstmayr H, Mehrabi A A, Nasyrova F Y, Chayut N, Matny O, Steffenson B J, Sandhu N, Chhuneja P, Lagudah E, Elkot A F, Tyrrell S, Bian X, Davey R P, Simonsen M, Schauser L, Tiwari V K, Randy Kutcher H, Hucl P, Li A, Liu D-C, Mao L, Xu S, Brown-Guedira G, Faris J, Dvorak J, Luo M-C, Krasileva K, Lux T, Artmeier S, Mayer K F X, Uauy C, Mascher M, Bentley A R, Keller B, Poland J, Wulff B B H:

Population genomic analysis of Aegilops tauschii identifies targets for bread wheat improvement. Nat. Biotechnol. 40 (2022) 422–431. https://dx.doi.org/10.1038/s41587-021-01058-4

Guo Y, Himmelbach A, Weiss E, Stein N, Mascher M:

Six-rowed wild-growing barleys are hybrids of diverse origins. Plant J. 111 (2022) 849-858. https://dx.doi.org/10.1111/tpj.15861

Hinterberger V, Douchkov D, Lück S, Kale S, Mascher M, Stein N, Reif J C, Schulthess A W:

Mining for new sources of resistance to powdery mildew in genetic resources of winter wheat. Front. Plant Sci. 13 (2022) 836723. https://dx.doi.org/10.3389/fpls.2022.836723

Jiang C, Lei M, Guo Y, Gao G, Shi L, Jin Y, Cai Y, Himmelbach A, Zhou S, He Q, Yao X, Kan J, Haberer G, Duan F, Li L, Liu J, Zhang J, Spannagl M, Liu C, Stein N, Feng Z, Mascher M, Yang P:

A reference-guided TILLING by amplicon-seq platform supports forward and reverse genetics in barley. Plant Commun. 3 (2022) 100317. https://doi.org/10.1016/j.xplc.2022.100317

Kale S M, Schulthess A W, Padmarasu S, Boeven P H G, Schacht J, Himmelbach A, Steuernagel B, Wulff B B H, Reif J C, Stein N, Mascher M:

A catalogue of resistance gene homologs and a chromosome-scale reference sequence support resistance gene mapping in winter wheat. Plant Biotechnol. J. 20 (2022) 1730-1742. https://dx.doi.org/10.1111/pbi.13843

Kamal N, Lux T, Jayakodi M, Haberer G, Gundlach H, Mayer K F X, Mascher M, Spannagl M:

The barley and wheat pan-genomes. In: Edwards D (Ed.): Plant bioinformatics: methods and protocols. (Series: Methods in molecular biology, Vol. 2443) New York, NY: Humana (2022) ISBN 978-1-0716-2066-3, 147-159. https://dx.doi.org/10.1007/978-1-0716-2067-0_7

Kamal N, Tsardakas Renhuldt N, Bentzer J, Gundlach H, Haberer G, Juhász A, Lux T, Bose U, Tye-Din J A, Lang D, van Gessel N, Reski R, Fu Y-B, Spégel P, Ceplitis A, Himmelbach A, Waters A J, Bekele W A, Colgrave M L, Hansson M, Stein N, Mayer K F X, Jellen E N, Maughan P J, Tinker N A, Mascher M, Olsson O, Spannagl M, Sirijovski N:

The mosaic oat genome gives insights into a uniquely healthy cereal crop. Nature 606 (2022) 113-119. https://dx.doi.org/10.1038/s41586-022-04732-y

Koppolu R, Jiang G, Milner S G, Muqaddasi Q H, Rutten T, Himmelbach A, Guo Y, Stein N, Mascher M, Schnurbusch T:

The barley mutant multiflorus2.b reveals quantitative genetic variation for new spikelet architecture. Theor. Appl. Genet. 135 (2022) 571–590. https://dx.doi.org/10.1007/s00122-021-03986-w

Navrátilová P, Toegelová H, Tulpová Z, Kuo Y-T, Stein N, Doležel J, Houben A, Šimková H, Mascher M:

Prospects of telomere-to-telomere assembly in barley: analysis of sequence gaps in the MorexV3 reference genome. Plant Biotechnol. J. 20 (2022) 1373-1386. https://dx.doi.org/10.1111/pbi.13816

Püpke Marone M, Singh H C, Pozniak C J, Mascher M:

A technical guide to TRITEX, a computational pipeline for chromosome-scale sequence assembly of plant genomes. Plant Methods 18 (2022) 128. https://dx.doi.org/10.1186/s13007-022-00964-1

Rosignoli S, Cosenza F, Moscou M J, Civolani L, Musiani F, Forestan C, Milner S G, Savojardo C, Tuberosa R, Salvi S:

Cloning the barley nec3 disease lesion mimic mutant using complementation by sequencing. Plant Genome 15 (2022) e20187. https://dx.doi.org/10.1002/tpg2.20187

Sakkour A, Mascher M, Himmelbach A, Haberer G, Lux T, Spannagl M, Stein N, Kawamoto S, Sato K:

Chromosome-scale assembly of barley Cv. Haruna Nijo as a resource for barley genetics. DNA Res. 29 (2022) dsac001. https://dx.doi.org/10.1093/dnares/dsac001

Schreiber M, Gao Y, Koch N, Fuchs J, Heckmann S, Himmelbach A, Börner A, Özkan H, Maurer A, Stein N, Mascher M, Dreissig S:

Recombination landscape divergence between populations is marked by larger low-recombining regions in domesticated rye. Mol. Biol. Evol. 39 (2022) msac131. https://dx.doi.org/10.1093/molbev/msac131

Schulthess A W, Kale S M, Liu F, Zhao Y, Philipp N, Rembe M, Jiang Y, Beukert U, Serfling A, Himmelbach A, Fuchs J, Oppermann M, Weise S, Boeven P H G, Schacht J, Longin C F H, Kollers S, Pfeiffer N, Korzun V, Lange M, Scholz U, Stein N, Mascher M, Reif J C:

Genomics-informed prebreeding unlocks the diversity in genebanks for wheat improvement. Nat. Genet. 54 (2022) 1544-1552. https://dx.doi.org/10.1038/s41588-022-01189-7

Schulthess A W, Kale S M, Zhao Y, Gogna A, Rembe M, Philipp N, Liu F, Beukert U, Serfling A, Himmelbach A, Oppermann M, Weise S, Boeven P H G, Schacht J, Longin C F H, Kollers S, Pfeiffer N, Korzun V, Fiebig A, Schüler D, Lange M, Scholz U, Stein N, Mascher M, Reif J C:

Large-scale genotyping and phenotyping of a worldwide winter wheat genebank for its use in pre-breeding. Sci. Data 9 (2022) 784. https://dx.doi.org/10.1038/s41597-022-01891-5

Tinker N A, Wight C P, Bekele W A, Yan W, Jellen E N, Renhuldt N T, Sirijovski N, Lux T, Spannagl M, Mascher M:

Genome analysis in Avena sativa reveals hidden breeding barriers and opportunities for oat improvement. Commun. Biol. 5 (2022) 474. https://dx.doi.org/10.1038/s42003-022-03256-5

Wang Y, Habekuss A, Jayakodi M, Mascher M, Snowdon R J, Stahl A, Fuss J, Ordon F, Perovic D:

High-resolution mapping of Barley mild mosaic virus resistance gene rym15. Front. Plant Sci. 13 (2022) 908170. https://dx.doi.org/10.3389/fpls.2022.908170

Yu G, Matny O, Champouret N, Steuernagel B, Moscou M J, Hernández-Pinzón I, Green P, Hayta S, Smedley M, Harwood W, Kangara N, Yue Y, Gardener C, Banfield M J, Olivera P D, Welchin C, Simmons J, Millet E, Minz-Dub A, Ronen M, Avni R, Sharon A, Patpour M, Justesen A F, Jayakodi M, Himmelbach A, Stein N, Wu S, Poland J, Ens J, Pozniak C, Karafiátová M, Molnár I, Doležel J, Ward E R, Reuber T L, Jones J D G, Mascher M, Steffenson B J, Wulff B B H:

Aegilops sharonensis genome-assisted identification of stem rust resistance gene Sr62. Nat. Commun. 13 (2022) 1607. https://dx.doi.org/10.1038/s41467-022-29132-8

Zhang H, Mascher M, Abbo S, Jayakodi M:

Advancing grain legumes domestication and evolution studies with genomics. Plant Cell Physiol. 63 (2022) 1540–1553. https://dx.doi.org/10.1093/pcp/pcac062

Câmara A S, Schubert V, Mascher M, Houben A:

A simple model explains the cell cycle-dependent assembly of centromeric nucleosomes in holocentric species. Nucleic Acids Res. 49 (2021) 9053–9065. https://dx.doi.org/10.1093/nar/gkab648

Chen C, Jost M, Clark B, Martin M, Matny O, Steffenson B J, Franckowiak J D, Mascher M, Singh D, Perovic D, Richardson T, Periyannan S, Lagudah E S, Park R F, Dracatos P M:

BED-domain-containing NLR from wild barley confers resistance to leaf rust. Plant Biotechnol. J. 19 (2021) 1206-1215. https://dx.doi.org/10.1111/pbi.13542

Gao L, Koo D-H, Juliana P, Rife T, Singh D, Lemes da Silva C, Lux T, Dorn K M, Clinesmith M, Silva P, Wang X, Spannagl M, Monat C, Friebe B, Steuernagel B, Muehlbauer G J, Walkowiak S, Pozniak C, Singh R, Stein N, Mascher M, Fritz A, Poland J:

The Aegilops ventricosa 2NvS segment in bread wheat: cytology, genomics and breeding. Theor. Appl. Genet. 134 (2021) 529–542. https://dx.doi.org/10.1007/s00122-020-03712-y

Halstead-Nussloch G, Tanaka T, Copetti D, Paape T, Kobayashi F, Hatakeyama M, Kanamori H, Wu J, Mascher M, Kawaura K, Shimizu K K, Handa H:

Multiple wheat genomes reveal novel Gli-2 sublocus location and variation of celiac disease epitopes in duplicated alpha-gliadin genes. Front. Plant Sci. 12 (2021) 715985. https://dx.doi.org/10.3389/fpls.2021.715985

Hewitt T, Müller M C, Molnár I, Mascher M, Holušová K, Šimková H, Kunz L, Zhang J, Li J, Bhatt D, Sharma R, Schudel S, Yu G, Steuernagel B, Periyannan S, Wulff B, Ayliffe M, McIntosh R, Keller B, Lagudah E, Zhang P:

A highly differentiated region of wheat chromosome 7AL encodes a Pm1a immune receptor that recognises its corresponding AvrPm1a effector from Blumeria graminis. New Phytol. 229 (2021) 2812-2826. https://dx.doi.org/10.1111/nph.17075

Jayakodi M, Schreiber M, Stein N, Mascher M:

Building pan-genome infrastructures for crop plants and their use in association genetics. DNA Res. 28 (2021) dsaa030. https://dx.doi.org/10.1093/dnares/dsaa030

Kirschner G K, Rosignoli S, Guo L, Vardanega I, Imani J, Altmüller J, Milner S G, Balzano R, Nagel K A, Pflugfelder D, Forestan C, Bovina R, Koller R, Stöcker T G, Mascher M, Simmonds J, Uauy C, Schoof H, Tuberosa R, Salvi S, Hochholdinger F:

ENHANCED GRAVITROPISM 2 encodes a STERILE ALPHA MOTIF-containing protein that controls root growth angle in barley and wheat. Proc. Natl. Acad. Sci. U.S.A. 118 (2021) e2101526118. https://dx.doi.org/10.1073/pnas.2101526118

Lange M, Alako B T F, Cochrane G, Ghaffar M, Mascher M, Habekost P-K, Hillebrand U, Scholz U, Schorch F, Freitag J, Scholz A H:

Quantitative monitoring of nucleotide sequence data from genetic resources in context of their citation in the scientific literature. GigaScience 10 (2021) giab084. https://dx.doi.org/10.1093/gigascience/giab084

Mascher M, Jayakodi M, Stein N:

The reinvention of potato. Cell Res. 31 (2021) 1144–1145. https://dx.doi.org/10.1038/s41422-021-00542-5

Mascher M, Wicker T, Jenkins J, Plott C, Lux T, Koh C S, Ens J, Gundlach H, Boston L B, Tulpová Z, Holden S, Hernández-Pinzón I, Scholz U, Mayer K F X, Spannagl M, Pozniak C J, Sharpe A G, Šimková H, Moscou M J, Grimwood J, Schmutz J, Stein N:

Long-read sequence assembly: a technical evaluation in barley. Plant Cell 33 (2021) 1888-1906. https://dx.doi.org/10.1093/plcell/koab077

Petroll R, Schreiber M, Finke H, Cock J M, Gould S B, Rensing S A:

Signatures of transcription factor evolution and the secondary gain of red algae complexity. Genes 12 (2021) 1055. https://dx.doi.org/10.3390/genes12071055

Rabanus-Wallace M T, Hackauf B, Mascher M, Lux T, Wicker T, Gundlach H, Baez M, Houben A, Mayer K F X, Guo L, Poland J, Pozniak C J, Walkowiak S, Melonek J, Praz C R, Schreiber M, Budak H, Heuberger M, Steuernagel B, Wulff B, Börner A, Byrns B, Čížková J, Fowler D B, Fritz A, Himmelbach A, Kaithakottil G, Keilwagen J, Keller B, Konkin D, Larsen J, Li Q, Myśków B, Padmarasu S, Rawat N, Sesiz U, Biyiklioglu-Kaya S, Sharpe A, Šimková H, Small I, Swarbreck D, Toegelová H, Tsvetkova N, Voylokov A V, Vrána J, Bauer E, Bolibok-Bragoszewska H, Doležel J, Hall A, Jia J, Korzun V, Laroche A, Ma X-F, Ordon F, Özkan H, Rakoczy-Trojanowska M, Scholz U, Schulman A H, Siekmann D, Stojalowski S, Tiwari V K, Spannagl M, Stein N:

Chromosome-scale genome assembly provides insights into rye biology, evolution and agronomic potential. Nat. Genet. 53 (2021) 564-573. https://dx.doi.org/10.1038/s41588-021-00807-0

Sato K, Abe F, Mascher M, Haberer G, Gundlach H, Spannagl M, Shirasawa K, Isobe S:

Chromosome-scale genome assembly of the transformation-amenable common wheat cultivar Fielder. DNA Res. 28 (2021) dsab008. https://dx.doi.org/10.1093/dnares/dsab008

Sato K, Mascher M, Himmelbach A, Haberer G, Spannagl M, Stein N:

Chromosome-scale assembly of wild barley accession ‘OUH602’. G3 Genes Genom. Genet. 11 (2021) jkab244. https://doi.org/10.1093/g3journal/jkab244

Schreiber M, Özkan H, Komatsuda T, Mascher M:

Evolution and domestication of rye. In: Rabanus-Wallace M T, Stein N (Eds.): The rye genome. (Series: Compendium of plant genomes) Cham: Springer (2021) ISBN 978-3-030-83383-1, 85-100. https://dx.doi.org/10.1007/978-3-030-83383-1_6

Shimizu K K, Copetti D, Okada M, Wicker T, Tameshige T, Hatakeyama M, Shimizu-Inatsugi R, Aquino C, Nishimura K, Kobayashi F, Murata K, Kuo T, Delorean E, Poland J, Haberer G, Spannagl M, Mayer K F X, Gutierrez-Gonzalez J, Muehlbauer G J, Monat C, Himmelbach A, Padmarasu S, Mascher M, Walkowiak S, Nakazaki T, Ban T, Kawaura K, Tsuji H, Pozniak C, Stein N, Sese J, Nasuda S, Handa H:

De novo genome assembly of the Japanese wheat cultivar Norin 61 highlights functional variation in flowering time and Fusarium resistance genes in East Asian genotypes. Plant Cell Physiol. 62 (2021) 8-27. https://dx.doi.org/10.1093/pcp/pcaa152

Thiel J, Koppolu R, Trautewig C, Hertig C, Kale S M, Erbe S, Mascher M, Himmelbach A, Rutten T, Esteban E, Pasha A, Kumlehn J, Provart N J, Vanderauwera S, Frohberg C, Schnurbusch T:

Transcriptional landscapes of floral meristems in barley. Sci. Adv. 7 (2021) eabf0832. https://dx.doi.org/10.1126/sciadv.abf0832

Tripodi P, Rabanus-Wallace M T, Barchi L, Kale S, Esposito S, Acquadro A, Schafleitner R, van Zonneveld M, Prohens J, Diez M J, Börner A, Salinier J, Caromel B, Bovy A, Boyaci F, Pasev G, Brandt R, Himmelbach A, Portis E, Finkers R, Lanteri S, Paran I, Lefebvre V, Giuliano G, Stein N:

Global range expansion history of pepper (Capsicum spp.) revealed by over 10,000 genebank accessions. Proc. Natl. Acad. Sci. U.S.A. 118 (2021) e2104315118. https://dx.doi.org/10.1073/pnas.2104315118

Wolde G M, Schreiber M, Trautewig C, Himmelbach A, Sakuma S, Mascher M, Schnurbusch T:

Genome-wide identification of loci modifying spike-branching in tetraploid wheat. Theor. Appl. Genet. 134 (2021) 1925–1943. https://dx.doi.org/10.1007/s00122-020-03743-5

Xu W, Tucker J R, Bekele W A, You F M, Fu Y-B, Khanal R, Yao Z, Singh J, Boyle B, Beattie A D, Belzile F, Mascher M, Tinker N A, Badea A:

Genome assembly of the Canadian two-row malting barley cultivar AAC synergy. G3 Genes Genom. Genet. 11 (2021) jkab031. https://dx.doi.org/10.1093/g3journal/jkab031

Žegarac A, Winkelbach L, Blöcher J, Diekmann Y, Krečković Gavrilović M, Porčić M, Stojković B, Milašinović L, Schreiber M, Wegmann D, Veeramah K R, Stefanović S, Burger J:

Ancient genomes provide insights into family structure and the heredity of social status in the early Bronze Age of southeastern Europe. Sci. Rep. 11 (2021) 10072. https://dx.doi.org/10.1038/s41598-021-89090-x

Zhu T, Wang L, Rimbert H, Rodriguez J C, Deal K R, De Oliveira R, Choulet F, Keeble-Gagnère G, Tibbits J, Rogers J, Eversole K, Appels R, Gu Y Q, Mascher M, Dvorak J, Luo M-C:

Optical maps refine the bread wheat Triticum aestivum cv Chinese Spring genome assembly. Plant J. 107 (2021) 303-314. https://doi.org/10.1111/tpj.15289

Dreissig S, Fuchs J, Himmelbach A, Mascher M, Houben A:

Quantification of recombination rate and segregation distortion by genotyping and sequencing of single pollen nuclei. In: Pradillo M, Heckmann S (Eds.): Plant Meiosis: methods and protocols. (Series: Methods in molecular biology, Vol. 2061) New York, NY: Humana Press (2020) 978-1-4939-9817-3, 281-300. https://dx.doi.org/10.1007/978-1-4939-9818-0_20

Haas M, Himmelbach A, Mascher M:

The contribution of cis- and trans-acting variants to gene regulation in wild and domesticated barley under cold stress and control conditions. J. Exp. Bot. 71 (2020) 2573-2584. https://dx.doi.org/10.1093/jxb/eraa036

Jayakodi M, Padmarasu S, Haberer G, Bonthala V S, Gundlach H, Monat C, Lux T, Kamal N, Lang D, Himmelbach A, Ens J, Zhang X Q, Angessa T T, Zhou G, Tan C, Hill C, Wang P, Schreiber M, Boston L B, Plott C, Jenkins J, Guo Y, Fiebig A, Budak H, Xu D, Zhang J, Wang C, Grimwood J, Schmutz J, Guo G, Zhang G, Mochida K, Hirayama T, Sato K, Chalmers K J, Langridge P, Waugh R, Pozniak C J, Scholz U, Mayer K F X, Spannagl M, Li C, Mascher M, Stein N:

The barley pan-genome reveals the hidden legacy of mutation breeding. Nature 588 (2020) 284-289. https://dx.doi.org/10.1038/s41586-020-2947-8

König P, Beier S, Basterrechea M, Schüler D, Arend D, Mascher M, Stein N, Scholz U, Lange M:

BRIDGE – a visual analytics web tool for barley genebank genomics. Front. Plant Sci. 11 (2020) 701. https://dx.doi.org/10.3389/fpls.2020.00701

Saxena R K, Kale S, Mir R R, Mallikarjuna N, Yadav P, Das R R, Molla J, Sonnappa M, Ghanta A, Narasimhan Y, Rathore A, Kumar C V S, Varshney R K:

Genotyping-by-sequencing and multilocation evaluation of two interspecific backcross populations identify QTLs for yield-related traits in pigeonpea. Theor. Appl. Genet. 133 (2020) 737–749. https://dx.doi.org/10.1007/s00122-019-03504-z

Schreiber M, Mascher M, Wright J, Padmarasu S, Himmelbach A, Heavens D, Milne L, Clavijo B J, Stein N, Waugh R:

A genome assembly of the barley transformation reference cultivar Golden Promise. G3-Genes Genom. Genet. 10 (2020) 1823-1827. https://dx.doi.org/10.1534/g3.119.401010

Sinha P, Singh V K, Saxena R K, Kale S M, Li Y, Garg V, Tang M, Khan A W, Kim K D, Chitikineni A, Saxena K B, Sameer Kumar C V, Liu X, Xu X, Jackson S, Powell W, Nevo E, Searle I R, Lodha M, Varshney R K:

Genome-wide analysis of epigenetic and transcriptional changes associated with heterosis in pigeonpea. Plant Biotechnol. J. 18 (2020) 1697-1710. https://dx.doi.org/10.1111/pbi.13333

Tikhenko N, Alqudah A M, Borisjuk L, Ortleb S, Rutten T, Wu D D, Nagel M, Himmelbach A, Mascher M, Röder M, Ganal M, Sehmisch S, Houben A, Börner A:

DEFECTIVE ENDOSPERM-D1 (Dee-D1) is crucial for endosperm development in hexaploid wheat. Commun. Biol. 3 (2020) 791. https://doi.org/10.1038/s42003-020-01509-9

Walkowiak S, Gao L, Monat C, Haberer G, Kassa M T, Brinton J, Ramirez-Gonzalez R H, Kolodziej M C, Delorean E, Thambugala D, Klymiuk V, Byrns B, Gundlach H, Bandi V, Siri J N, Nilsen K, Aquino C, Himmelbach A, Copetti D, Ban T, Venturini L, Bevan M, Clavijo B, Koo D H, Ens J, Wiebe K, NDiaye A, Fritz A K, Gutwin C, Fiebig A, Fosker C, Fu B X, Accinelli G G, Gardner K A, Fradgley N, Gutierrez-Gonzalez J, Halstead-Nussloch G, Hatakeyama M, Koh C S, Deek J, Costamagna A C, Fobert P, Heavens D, Kanamori H, Kawaura K, Kobayashi F, Krasileva K, Kuo T, McKenzie N, Murata K, Nabeka Y, Paape T, Padmarasu S, Percival-Alwyn L, Kagale S, Scholz U, Sese J, Juliana P, Singh R, Shimizu-Inatsugi R, Swarbreck D, Cockram J, Budak H, Tameshige T, Tanaka T, Tsuji H, Wright J, Wu J, Steuernagel B, Small I, Cloutier S, Keeble-Gagnere G, Muehlbauer G, Tibbets J, Nasuda S, Melonek J, Hucl P J, Sharpe A G, Clark M, Legg E, Bharti A, Langridge P, Hall A, Uauy C, Mascher M, Krattinger S G, Handa H, Shimizu K K, Distelfeld A, Chalmers K, Keller B, Mayer K F X, Poland J, Stein N, McCartney C A, Spannagl M, Wicker T, Pozniak C J:

Multiple wheat genomes reveal global variation in modern breeding. Nature 588 (2020) 277-283. https://dx.doi.org/10.1038/s41586-020-2961-x

Youssef H M, Allam M, Boussora F, Himmelbach A, Milner S G, Mascher M, Schnurbusch T:

Dissecting the genetic basis of lateral and central spikelet development and grain traits in intermedium-spike barley (Hordeum vulgare convar. intermedium). Plants 9 (2020) 1655. https://dx.doi.org/10.3390/plants9121655

Börner A, Alqudah A, Alomari D, Berrueta W, Cardelli M, Castro A, Castro A, Chesnokov Y, del Río J, Eggert K, Giménez D, Jayakodi M, Kartseva T, Lohwasser U, Lori G, Malbrán I, Misheva S, Muqaddasi Q, Nagel M, Röder M, Saldúa L, Schierenbeck M, Shamanin V, Simón M, Tarawneh R, Uranga J, von Wirén N, Yanniccari M, Zaynali Nezhad K:

Items from Germany. Ann. Wheat Newsl. 65 (2019) 12-16.

Bustos-Korts D, Dawson I K, Russell J, Tondelli A, Guerra D, Ferrandi C, Strozzi F, Nicolazzi E L, Molnar-Lang M, Ozkan H, Megyeri M, Miko P, Cakir E, Yakisir E, Trabanco N, Delbono S, Kyriakidis S, Booth A, Cammarano D, Mascher M, Werner P, Cattivelli L, Rossini L, Stein N, Kilian B, Waugh R, van Eeuwijk F A:

Exome sequences and multi-environment field trials elucidate the genetic basis of adaptation in barley. Plant J. 99 (2019) 1172-1191. https://dx.doi.org/10.1111/tpj.14414

Darrier B, Russell J, Milner S G, Hedley P E, Shaw P D, Macaulay M, Ramsay L D, Halpin C, Mascher M, Fleury D L, Langridge P, Stein N, Waugh R:

A comparison of mainstream genotyping platforms for the evaluation and use of barley genetic resources. Front. Plant Sci. 10 (2019) 544. https://dx.doi.org/10.3389/fpls.2019.00544

Dreissig S, Mascher M, Heckmann S:

Variation in recombination rate is shaped by domestication and environmental conditions in barley. Mol. Biol. Evol. 36 (2019) 2029–2039. https://dx.doi.org/10.1093/molbev/msz141

Gutierrez-Gonzalez J J, Mascher M, Poland J, Muehlbauer G J:

Dense genotyping-by-sequencing linkage maps of two Synthetic W7984xOpata reference populations provide insights into wheat structural diversity. Sci. Rep. 9 (2019) 1793. https://dx.doi.org/10.1038/s41598-018-38111-3

Haas M, Mascher M:

Use of the secondary gene pool of barley in breeding improved varieties. In: Ordon F, Friedt W (Eds.): Advances in breeding techniques for cereal crops. (Series: Burleigh dodds series in agricultural science, Vol. 60) Cambridge, UK: Burleigh Dodds Science Pub LTD (2019) ISBN 978-1-78676-244-3, https://dx.doi.org/10.19103/AS.2019.0051.02

Haas M, Schreiber M, Mascher M:

Domestication and crop evolution of wheat and barley: Genes, genomics, and future directions. J. Integr. Plant Biol. 61 (2019) 204-225. https://dx.doi.org/10.1111/jipb.12737

Heuermann M C, Rosso M G, Mascher M, Brandt R, Tschiersch H, Altschmied L, Altmann T:

Combining next-generation sequencing and progeny testing for rapid identification of induced recessive and dominant mutations in maize M2 individuals. Plant J. 100 (2019) 851-862. https://dx.doi.org/10.1111/tpj.14431

Hoseinzadeh H, Zhou R, Mascher M, Himmelbach A, Niks R E, Schweizer P, Stein N:

High resolution genetic and physical mapping of a major powdery mildew resistance locus in barley. Front. Plant Sci. 10 (2019) 146. https://dx.doi.org/10.3389/fpls.2019.00146

Jayakodi M, Schreiber M, Mascher M:

Sweet genes in melon and watermelon. Nat. Genet. 51 (2019) 1572-1573. https://dx.doi.org/10.1038/s41588-019-0529-1

Li M, Hensel G, Mascher M, Melzer M, Budhagatapalli N, Rutten T, Himmelbach A, Beier S, Korzun V, Kumlehn J, Boerner T, Stein N:

Leaf variegation and impaired chloroplast development caused by a truncated CCT domain gene in albostrians barley. Plant Cell 31 (2019) 1430-1445. https://dx.doi.org/10.1105/tpc.19.00132

Maccaferri M, Harris N S, Twardziok S O, Pasam R K, Gundlach H, Spannagl M, Ormanbekova D, Lux T, Prade V M, Milner S G, Himmelbach A, Mascher M, Bagnaresi P, Faccioli P, Cozzi P, Lauria M, Lazzari B, Stella A, Manconi A, Gnocchi M, Moscatelli M, Avni R, Deek J, Biyiklioglu S, Frascaroli E, Corneti S, Salvi S, Sonnante G, Desiderio F, Mare C, Crosatti C, Mica E, Ozkan H, Kilian B, De Vita P, Marone D, Joukhadar R, Mazzucotelli E, Nigro D, Gadaleta A, Chao S, Faris J D, Melo A T O, Pumphrey M, Pecchioni N, Milanesi L, Wiebe K, Ens J, MacLachlan R P, Clarke J M, Sharpe A G, Koh C S, Liang K Y H, Taylor G J, Knox R, Budak H, Mastrangelo A M, Xu S S, Stein N, Hale I, Distelfeld A, Hayden M J, Tuberosa R, Walkowiak S, Mayer K F X, Ceriotti A, Pozniak C J, Cattivelli L:

Durum wheat genome highlights past domestication signatures and future improvement targets. Nat. Genet. 51 (2019) 885-895. https://dx.doi.org/10.1038/s41588-019-0381-3

Mascher M, Schreiber M, Scholz U, Graner A, Reif J C, Stein N:

Genebank genomics bridges the gap between the conservation of crop diversity and plant breeding. Nat. Genet. 51 (2019) 1076-1081. https://dx.doi.org/10.1038/s41588-019-0443-6

Milne R J, Dibley K E, Schnippenkoetter W H, Mascher M, Lui A C, Wang L, Lo C, Ashton A R, Ryan P R, Lagudah E:

The wheat Lr67 gene of the Sugar Transport Protein 13 family confers multipathogen resistance in barley. Plant Physiol. 179 (2019) 1285-1297. https://dx.doi.org/10.1104/pp.18.00945

Milner S G, Jost M, Taketa S, Mazón E R, Himmelbach A, Oppermann M, Weise S, Knüpffer H, Basterrechea M, König P, Schüler D, Sharma R, Pasam R K, Rutten T, Guo G, Xu D, Zhang J, Herren G, Müller T, Krattinger S G, Keller B, Jiang Y, González M Y, Zhao Y, Habekuß A, Färber S, Ordon F, Lange M, Börner A, Graner A, Reif J C, Scholz U, Mascher M, Stein N:

Genebank genomics highlights the diversity of a global barley collection. Nat. Genet. 51 (2019) 319-326. https://doi.org/10.1038/s41588-018-0266-x

Monat C, Padmarasu S, Lux T, Wicker T, Gundlach H, Himmelbach A, Ens J, Li C, Muehlbauer G J, Schulman A H, Waugh R, Braumann I, Pozniak C, Scholz U, Mayer K F X, Spannagl M, Stein N, Mascher M:

TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools. Genome Biol. 20 (2019) 284. https://dx.doi.org/10.1186/s13059-019-1899-5

Monat C, Schreiber M, Stein N, Mascher M:

Prospects of pan-genomics in barley. Theor. Appl. Genet. 132 (2019) 785–796. https://dx.doi.org/10.1007/s00122-018-3234-z

Muqaddasi Q H, Jayakodi M, Börner A, Röder M S:

Identification of consistent QTL with large effect on anther extrusion in doubled haploid populations developed from spring wheat accessions in German Federal ex situ Genebank. Theor. Appl. Genet. 132 (2019) 3035–3045. https://dx.doi.org/10.1007/s00122-019-03404-2

Padmarasu S, Himmelbach A, Mascher M, Stein N:

In situ Hi-C for plants: an improved method to detect long-range chromatin interactions. In: Chekanova J, Wang H-L (Eds.): Plant long non-coding RNAs: methods and protocols. (Series: Methods in molecular biology, Vol. 1933) New York, NY: Humana Press (2019) ISBN 978-1-4939-9044-3, 441-472. https://doi.org/10.1007/978-1-4939-9045-0_28

Radchuk V, Sharma R, Potokina E, Radchuk R, Weier D, Munz E, Schreiber M, Mascher M, Stein N, Wicker T, Kilian B, Borisjuk L:

The highly divergent Jekyll genes, required for sexual reproduction, are lineage specific for the related grass tribes Triticeae and Bromeae. Plant J. 98 (2019) 961-974. https://dx.doi.org/10.1111/tpj.14363

Sakuma S, Golan G, Guo Z, Ogawa T, Tagiri A, Sugimoto K, Bernhardt N, Brassac J, Mascher M, Hensel G, Ohnishi S, Jinno H, Yamashita Y, Ayalon I, Peleg Z, Schnurbusch T, Komatsuda T:

Unleashing floret fertility in wheat through the mutation of a homeobox gene. Proc. Natl. Acad. Sci. U.S.A. 116 (2019) 5182-5187. https://dx.doi.org/10.1073/pnas.1815465116

Schreiber M:

Ein Blick in die Kulturgeschichte von Roggen, Gerste & Weizen. (PhD Thesis) Mainz, Johannes Gutenberg-Universität Mainz, Fachbereich Anthropologie (2019) 399 pp.

Schreiber M, Himmelbach A, Börner A, Mascher M:

Genetic diversity and relationship of domesticated rye and its wild relatives as revealed through genotyping-by-sequencing. Evol. Appl. 12 (2019) 66-77. https://dx.doi.org/10.1111/eva.12624

Wolde G M, Mascher M, Schnurbusch T:

Genetic modification of spikelet arrangement in wheat increases grain number without significantly affecting grain weight. Mol. Genet. Genomics 294 (2019) 457–468. https://dx.doi.org/10.1007/s00438-018-1523-5

Wolde G M, Trautewig C, Mascher M, Schnurbusch T:

Genetic insights into morphometric inflorescence traits of wheat. Theor. Appl. Genet. 132 (2019) 1661-1676. https://dx.doi.org/10.1007/s00122-019-03305-4

Brandt R, Mascher M, Thiel J:

Laser-capture microdissection-based RNA-seq of barley grain tissues. In: Murray G I (Ed.): Laser Capture Microdissection: Methods and Protocols. (Series: Methods in molecular biology, Vol. 1723) New York, NY: Humana Press (2018) ISBN 978-1-4939-7557-0, 397-409. https://doi.org/10.1007/978-1-4939-7558-7_23

Himmelbach A, Ruban A, Walde I, Šimková H, Doležel J, Hastie A, Stein N, Mascher M:

Discovery of multi-megabase polymorphic inversions by chromosome conformation capture sequencing in large-genome plant species. Plant J. 96 (2018) 1309-1316. https://dx.doi.org/10.1111/tpj.14109

Himmelbach A, Walde I, Mascher M, Stein N:

Tethered chromosome conformation capture sequencing in Triticeae: a valuable tool for genome assembly. Bio-protocol 8 (2018) e2955. https://dx.doi.org/10.21769/BioProtoc.2955

Mascher M, Sato K, Steffenson B:

Genomics approaches to mining barley germplasm collections. In: Stein N, Muehlbauer G J (Eds.): The Barley Genome, 1st ed. (Series: Kole, C (Ed.): Compendium of Plant Genomes) Cham: Springer (2018) ISBN 978-3-319-92528-8, 155-169. https://dx.doi.org/10.1007/978-3-319-92528-8_11

Muñoz-Amatriaín M, Mascher M:

Sequence diversity and structural variation. In: Stein N, Muehlbauer G J (Eds.): The Barley Genome, 1st ed. (Series: Kole, C (Ed.): Compendium of Plant Genomes) Cham: Springer (2018) ISBN 978-3-319-92528-8, 109-122. https://dx.doi.org/10.1007/978-3-319-92528-8_8

Rajaraman J, Douchkov D, Lück S, Hensel G, Nowara D, Pogoda M, Rutten T, Meitzel T, Brassac J, Höfle C, Hückelhoven R, Klinkenberg J, Trujillo M, Bauer E, Schmutzer T, Himmelbach A, Mascher M, Lazzari B, Stein N, Kumlehn J, Schweizer P:

Evolutionarily conserved partial gene duplication in the Triticeae tribe of grasses confers pathogen resistance. Genome Biol. 19 (2018) 116. https://dx.doi.org/10.1186/s13059-018-1472-7

Romero C C T, Vermeulen J P, Vels A, Himmelbach A, Mascher M, Niks R E:

Mapping resistance to powdery mildew in barley reveals a large-effect nonhost resistance QTL. Theor. Appl. Genet. 131 (2018) 1031–1045. https://dx.doi.org/10.1007/s00122-018-3055-0

Schreiber M, Stein N, Mascher M:

Genomic approaches for studying crop evolution. Genome Biol. 19 (2018) 140. https://dx.doi.org/10.1186/s13059-018-1528-8

Stein N, Mascher M:

Barley genome sequencing amd assembly - a first version reference sequence. In: Stein N, Muehlbauer G J (Eds.): The Barley Genome, 1st ed. (Series: Kole, C (Ed.): Compendium of Plant Genomes) Cham: Springer (2018) ISBN 978-3-319-92528-8, 57-71. https://dx.doi.org/10.1007/978-3-319-92528-8_5

The International Wheat Genome Sequencing Consortium (IWGSC; IPK authors: Mascher M, Zhou, R., Himmelbach, A. & co-corresponding author: Stein, N.):

Shifting the limits in wheat research and breeding using a fully annotated reference genome. Science 361 (2018) eaar7191. https://dx.doi.org/10.1126/science.aar7191

Zeng X, Guo Y, Xu Q, Mascher M, Guo G, Li S, Mao L, Liu Q, Xia Z, Zhou J, Yuan H, Tai S, Wang Y, Wei Z, Song L, Zha S, Li S, Tang Y, Bai L, Zhuang Z, He W, Zhao S, Fang X, Gao Q, Yin Y, Wang J, Yang H, Zhang J, Henry R J, Stein N, Tashi N:

Origin and evolution of qingke barley in Tibet. Nat. Commun. 9 (2018) 5433. https://dx.doi.org/10.1038/s41467-018-07920-5

Avni R, Nave M, Barad O, Baruch K, Twardziok S O, Gundlach H, Hale I, Mascher M, Spannagl M, Wiebe K, Jordan K W, Golan G, Deek J, Ben-Zvi B, Ben-Zvi G, Himmelbach A, MacLachlan R P, Sharpe A G, Fritz A, Ben-David R, Budak H, Fahima T, Korol A, Faris J D, Hernandez A, Mikel M A, Levy A A, Steffenson B, Maccaferri M, Tuberosa R, Cattivelli L, Faccioli P, Ceriotti A, Kashkush K, Pourkheirandish M, Komatsuda T, Eilam T, Sela H, Sharon A, Ohad N, Chamovitz D A, Mayer K F X, Stein N, Ronen G, Peleg Z, Pozniak C J, Akhunov E D, Distelfeld A:

Wild emmer genome architecture and diversity elucidate wheat evolution and domestication. Science 357 (2017) 93-97. https://dx.doi.org/10.1126/science.aan0032

Bauer E, Schmutzer T, Barilar I, Mascher M, Gundlach H, Martis M M, Twardziok S O, Hackauf B, Gordillo A, Wilde P, Schmidt M, Korzun V, Mayer K F X, Schmid K, Schön C-C, Scholz U:

Towards a whole-genome sequence for rye (Secale cereale L.). Plant J. 89 (2017) 853-869. https://dx.doi.org/10.1111/tpj.13436

Beier S, Himmelbach A, Colmsee C, Zhang X-Q, Barrero R A, Zhang Q, Li L, Bayer M, Bolser D, Taudien S, Groth M, Felder M, Hastie A, Šimková H, Staňková H, Vrána J, Chan S, Muñoz-Amatriaín M, Ounit R, Wanamaker S, Schmutzer T, Aliyeva-Schnorr L, Grasso S, Tanskanen J, Sampath D, Heavens D, Cao S, Chapman B, Dai F, Han Y, Li H, Li X, Lin C, McCooke J K, Tan C, Wang S, Yin S, Zhou G, Poland J A, Bellgard M I, Houben A, Doležel J, Ayling S, Lonardi S, Langridge P, Muehlbauer G J, Kersey P, Clark M D, Caccamo M, Schulman A H, Platzer M, Close T J, Hansson M, Zhang G, Braumann I, Li C, Waugh R, Scholz U, Stein N, Mascher M:

Construction of a map-based reference genome sequence for barley, Hordeum vulgare L. Sci. Data 4 (2017) 170044. https://dx.doi.org/10.1038/sdata.2017.44

Beier S, Thiel T, Münch T, Scholz U, Mascher M:

MISA-web: a web server for microsatellite prediction. Bioinformatics 33 (2017) 2583–2585. https://dx.doi.org/10.1093/bioinformatics/btx198

Braatz J, Harloff H-J, Mascher M, Stein N, Himmelbach A, Jung C:

CRISPR-Cas9 targeted mutagenesis leads to simultaneous modification of different homoeologous gene copies in polyploid oilseed rape (Brassica napus). Plant Physiol. 174 (2017) 935-942. https://dx.doi.org/10.1104/pp.17.00426

Dreissig S, Fuchs J, Himmelbach A, Mascher M, Houben A:

Sequencing of single pollen nuclei reveals meiotic recombination events at megabase resolution and circumvents segregation distortion caused by postmeiotic processes. Front. Plant Sci. 8 (2017) 1620. https://dx.doi.org/10.3389/fpls.2017.01620

Mascher M, Gundlach H, Himmelbach A, Beier S, Twardziok S O, Wicker T, Radchuk V, Dockter C, Hedley P E, Russell J, Bayer M, Ramsay L, Liu H, Haberer G, Zhang X-Q, Zhang Q, Barrero R A, Li L, Taudien S, Groth M, Felder M, Hastie A, Šimková H, Staňková H, Vrána J, Chan S, Muñoz-Amatriaín M, Ounit R, Wanamaker S, Bolser D, Colmsee C, Schmutzer T, Aliyeva-Schnorr L, Grasso S, Tanskanen J, Chailyan A, Sampath D, Heavens D, Clissold L, Cao S, Chapman B, Dai F, Han Y, Li H, Li X, Lin C, McCooke J K, Tan C, Wang P, Wang S, Yin S, Zhou G, Poland J A, Bellgard M I, Borisjuk L, Houben A, Doležel J, Ayling S, Lonardi S, Kersey P, Langridge P, Muehlbauer G J, Clark M D, Caccamo M, Schulman A H, Mayer K F X, Platzer M, Close T J, Scholz U, Hansson M, Zhang G, Braumann I, Spannagl M, Li C, Waugh R, Stein N:

A chromosome conformation capture ordered sequence of the barley genome. Nature 544 (2017) 427-433. https://dx.doi.org/10.1038/nature22043

Meier A, Worch S, Böer E, Hartmann A, Mascher M, Marzec M, Scholz U, Riechen J, Baronian K, Schauer F, Bode R, Kunze G:

Agdc1p – a gallic acid decarboxylase involved in the degradation of 1 tannic acid in the yeast Blastobotrys (Arxula) adeninivorans. Front. Microbiol. 8 (2017) 1777. https://dx.doi.org/10.3389/fmicb.2017.01777

Wendler N, Mascher M, Himmelbach A, Bini F, Kumlehn J, Stein N:

A high-density, sequence-enriched genetic map of Hordeum bulbosum and its collinearity to H. vulgare. Plant Genome 10 (2017) https://dx.doi.org/10.3835/plantgenome2017.06.0049

Wicker T, Schulman A H, Tanskanen J, Spannagl M, Twardziok S, Mascher M, Springer N M, Li Q, Waugh R, Li C, Zhang G, Stein N, Mayer K F X, Gundlach H:

The repetitive landscape of the 5100 Mbp barley genome. Mobile DNA 8 (2017) 22. https://dx.doi.org/10.1186/s13100-017-0102-3

Youssef H M, Mascher M, Ayoub M A, Stein N, Kilian B, Schnurbusch T:

Natural diversity of inflorescence architecture traces cryptic domestication genes in barley (Hordeum vulgare L.). Genet. Resour. Crop Evol. 64 (2017) 843-853. https://dx.doi.org/10.1007/s10722-017-0504-6

Beier S, Himmelbach A, Schmutzer T, Felder M, Taudien S, Mayer K F X, Platzer M, Stein N, Scholz U, Mascher M:

Multiplex sequencing of bacterial artificial chromosomes for assembling complex plant genomes. Plant Biotechnol. J. 14 (2016) 1511-1522. https://dx.doi.org/10.1111/pbi.12511

Jost M, Taketa S, Mascher M, Himmelbach A, Yuo T, Shahinnia F, Rutten T, Druka A, Schmutzer T, Steuernagel B, Beier S, Taudien S, Scholz U, Morgante M, Waugh R, Stein N:

A homolog of Blade-On-Petiole 1 and 2 (BOP1/2) controls internode length and homeotic changes of the barley inflorescence. Plant Physiol. 171 (2016) 1113-1127. https://dx.doi.org/10.1104/pp.16.00124

Livaja M, Unterseer S, Erath W, Lehermeier C, Wieseke R, Plieske J, Polley A, Luerssen H, Wieckhorst S, Mascher M, Hahn V, Ouzunova M, Schön C C, Ganal M W:

Diversity analysis and genomic prediction of Sclerotinia resistance in sunflower using a new 25 K SNP genotyping array. Theor. Appl. Genet. 129 (2016) 317-329. https://dx.doi.org/10.1007/s00122-015-2629-3

Mascher M, Schuenemann V J, Davidovich U, Marom N, Himmelbach A, Hübner S, Korol A, David M, Reiter E, Riehl S, Schreiber M, Vohr S H, Green R E, Dawson I K, Russell J, Kilian B, Muehlbauer G J, Waugh R, Fahima T, Krause J, Weiss E, Stein N:

Genomic analysis of 6,000-year-old cultivated grain illuminates the domestication history of barley. Nat. Genet. 48 (2016) 1089-1093. https://dx.doi.org/10.1038/ng.3611

Nagel M, Kodde J, Pistrick S, Mascher M, Börner A, Groot S P C:

Barley seed ageing: genetics behind the dry elevated pressure of oxygen ageing and moist controlled deterioration. Front. Plant Sci. 7 (2016) 388. https://dx.doi.org/10.3389/fpls.2016.00388

Rauter M, Kasprzak J, Becker K, Riechen J, Worch S, Hartmann A, Mascher M, Scholz U, Baronian K, Bode R, Schauer F, Matthias Vorbrodt H, Kunze G:

Aadh2p: an Arxula adeninivorans alcohol dehydrogenase involved in the first step of the 1-butanol degradation pathway. Microb. Cell Fact. 15 (2016) 175. https://dx.doi.org/10.1186/s12934-016-0573-9

Russell J, Mascher M, Dawson I K, Kyriakidis S, Calixto C, Freund F, Bayer M, Milne I, Marshall-Griffiths T, Heinen S, Hofstad A, Sharma R, Himmelbach A, Knauft M, van Zonneveld M, Brown J W, Schmid K, Kilian B, Muehlbauer G J, Stein N, Waugh R:

Exome sequencing of geographically diverse barley landraces and wild relatives gives insights into environmental adaptation. Nat. Genet. 48 (2016) 1024-1030. https://dx.doi.org/10.1038/ng.3612

Brown R H, Singh J, Singh S, Dahleen L S, Lemaux P G, Stein N, Mascher M, Bregitzer P:

Behavior of a modified Dissociation element in barley: a tool for genetic studies and for breeding transgenic barley. Mol. Breed. 35 (2015) 85. https://dx.doi.org/10.1007/s11032-015-0193-9

Chapman J A, Mascher M, Buluç A, Barry K, Georganas E, Session A, Strnadova V, Jenkins J, Seghal S, Oliker L, Schmutz J, Yelick K A, Scholz U, Waugh R, Poland J A, Muehlbauer G J, Stein N, Rokhsar D S:

A whole-genome shotgun approach for assembling and anchoring the hexaploid bread wheat genome. Genome Biol. 16 (2015) 26. https://dx.doi.org/10.1186/s13059-015-0582-8

Colmsee C, Beier S, Himmelbach A, Schmutzer T, Stein N, Scholz U, Mascher M:

BARLEX – the barley draft genome explorer. Mol. Plant 8 (2015) 964-966. https://dx.doi.org/10.1016/j.molp.2015.03.009

Lermontova I, Sandmann M, Mascher M, Schmit A C, Chabouté M E:

Centromeric chromatin and its dynamics in plants. Plant J. 83 (2015) 4-17. https://dx.doi.org/10.1111/tpj.12875

Mascher M:

Genetische Verankerung und Anordnung von Sequenzassemblies zur Unterstützung der genombasierten Pflanzenzüchtung. 17. Kurt von Rümker-Vorträge. Vortr. Pflanzenzücht. 85 (2015) 63-67.

Pourkheirandish M, Hensel G, Kilian B, Senthil N, Chen G, Sameri M, Azhaguvel P, Sakuma S, Dhanagond S, Sharma R, Mascher M, Himmelbach A, Gottwald S, Nair S K, Tagiri A, Yukuhiro F, Nagamura Y, Kanamori H, Matsumoto T, Willcox G, Middleton C P, Wicker T, Walther A, Waugh R, Fincher G B, Stein N, Kumlehn J, Sato K, Komatsuda T:

Evolution of the grain dispersal system in barley. Cell 162 (2015) 527-539. https://dx.doi.org/10.1016/j.cell.2015.07.002

Spannagl M, Alaux M, Lange M, Bolser D M, Bader K C, Letellier T, Kimmel E, Flores R, Pommier C, Kerhornou A, Walts B, Nussbaumer T, Grabmuller C, Chen J, Colmsee C, Beier S, Mascher M, Schmutzer T, Arend D, Thanki A, Ramirez-Gonzalez R, Ayling M, Ayling S, Caccamo M, Mayer K F X, Scholz U, Steinbach D, Quesneville H, Kersey P J:

transPLANT resources for Triticeae genomic data. Plant Genome 9 (2015) 1-13. https://dx.doi.org/10.3835/plantgenome2015.06.0038

Wendler N, Mascher M, Himmelbach A, Johnston P, Pickering R, Stein N:

Bulbosum to go: a toolbox to utilize Hordeum vulgare/ bulbosum introgressions for breeding and beyond. Mol. Plant 8 (2015) 1507-1519. https://dx.doi.org/10.1016/j.molp.2015.05.004

Zakhrabekova S, Dockter C, Ahmann K, Braumann I, Gough S P, Wendt T, Lundqvist U, Mascher M, Stein N, Hansson M:

Genetic linkage facilitates cloning of Ert-m regulating plant architecture in barley and identified a strong candidate of Ant1 involved in anthocyanin biosynthesis. Plant Mol. Biol. 88 (2015) 609-626. https://dx.doi.org/10.1007/s11103-015-0350-x

Ariyadasa R, Mascher M, Nussbaumer T, Schulte D, Frenkel Z, Poursarebani N, Zhou R, Steuernagel B, Gundlach H, Taudien S, Felder M, Platzer M, Himmelbach A, Schmutzer T, Hedley P E, Muehlbauer G J, Scholz U, Korol A, Mayer K F X, Waugh R, Langridge P, Graner A, Stein N:

A sequence-ready physical map of barley anchored genetically by two million single-nucleotide polymorphisms. Plant Physiol. 164 (2014) 412-423. https://dx.doi.org/10.1104/pp.113.228213

Kuhlmann M, Finke A, Mascher M, Mette M F:

DNA methylation maintenance consolidates RNA-directed DNA methylation and transcriptional gene silencing over generations in Arabidopsis thaliana. Plant J. 80 (2014) 269-281. https://dx.doi.org/10.1111/tpj.12630

Kunze G, Gaillardin C, Czernicka M, Durrens P, Martin T, Böer E, Gabaldón T, Cruz J A, Talla E, Marck C, Goffeau A, Barbe V, Baret P, Baronian K, Beier S, Bleykasten C, Bode R, Casaregola S, Despons L, Fairhead C, Giersberg M, Gierski P P, Hähnel U, Hartmann A, Jankowska D, Jubin C, Jung P, Lafontaine I, Leh-Louis V, Lemaire M, Marcet-Houben M, Mascher M, Morel G, Richard G-F, Riechen J, Sacerdot C, Sarkar A, Savel G, Schacherer J, Sherman D J, Stein N, Straub M-L, Thierry A, Trautwein-Schult A, Vacherie B, Westhof E, Worch S, Dujon B, Souciet J-L, Wincker P, Scholz U, Neuvéglise C:

The complete genome of Blastobotrys (Arxula) adeninivorans LS3 - a yeast of biotechnological interest. Biotechnol. Biofuels 7 (2014) 66. https://dx.doi.org/10.1186/1754-6834-7-66

Mascher M:

POPSEQ Anchoring and ordering contig assemblies from next generation sequencing data by population sequencing. (PhD Thesis) Bielefeld, Universität Bielefeld, Technische Fakultät (2014) 133 pp.

Mascher M, Gerlach N, Gahrtz M, Bucher M, Scholz U, Dresselhaus T:

Sequence and ionomic analysis of divergent strains of maize inbred line B73 with an altered growth phenotype. PLoS One 9 (2014) e96782. https://dx.doi.org/10.1371/journal.pone.0096782

Mascher M, Jost M, Kuon J E, Himmelbach A, Assfalg A, Beier S, Scholz U, Graner A, Stein N:

Mapping-by-sequencing accelerates forward genetics in barley. Genome Biol. 15 (2014) R78. https://dx.doi.org/10.1186/gb-2014-15-6-r78

Mascher M, Stein N:

Genetic anchoring of whole-genome shotgun assemblies. Front. Genet. 5 (2014) 208. https://dx.doi.org/10.3389/fgene.2014.00208

The International Wheat Genome Sequencing Consortium (IWGSC; IPK Authors: Mascher M, Scholz, U. & Stein, N.):

A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome. Science 345 (2014) 1251788. https://dx.doi.org/10.1126/science.1251788

Wendler N, Mascher M, Nöh C, Himmelbach A, Scholz U, Ruge-Wehling B, Stein N:

Unlocking the secondary gene-pool of barley with next-generation sequencing. Plant Biotechnol. J. 12 (2014) 1122-1131. https://dx.doi.org/10.1111/pbi.12219

Colmsee C, Czauderna T, Grafahrend-Belau E, Hartmann A, Lange M, Mascher M, Weise S, Scholz U, Schreiber F:

OPTIMAS-DW, MetaCrop and VANTED: a case study for data integration, curation and visualisation in life sciences. In: Horbach M (Ed.): GI-Jahrestagung. (Series: LNI, Vol. 220) (2013) ISBN 978-3-88579-614-5, 1834-1840.

Mascher M, Muehlbauer G J, Rokhsar D S, Chapman J, Schmutz J, Barry K, Munoz-Amatriain M, Close T J, Wise R P, Schulman A H, Himmelbach A, Mayer K F, Scholz U, Poland J A, Stein N, Waugh R:

Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ). Plant J. 76 (2013) 718-727. https://dx.doi.org/10.1111/tpj.12319

Mascher M, Richmond T A, Gerhardt D J, Himmelbach A, Clissold L, Sampath D, Ayling S, Steuernagel B, Pfeifer M, DAscenzo M, Akhunov E D, Hedley P E, Gonzales A M, Morrell P L, Kilian B, Blattner F R, Scholz U, Mayer K F, Flavell A J, Muehlbauer G J, Waugh R, Jeddeloh J A, Stein N:

Barley whole exome capture: a tool for genomic research in the genus Hordeum and beyond. Plant J. 76 (2013) 494-505. https://dx.doi.org/10.1111/tpj.12294

Mascher M, Schubert I, Scholz U, Friedel S:

Patterns of nucleotide asymmetries in plant and animal genomes. Biosystems 111 (2013) 181-189. https://dx.doi.org/10.1016/j.biosystems.2013.02.001

Mascher M, Wu S, Amand P S, Stein N, Poland J:

Application of genotyping-by-sequencing on semiconductor sequencing platforms: a comparison of genetic and reference-based marker ordering in barley. PLoS One 8 (2013) e76925. https://dx.doi.org/10.1371/journal.pone.0076925

Muñoz-Amatriaín M, Eichten S R, Wicker T, Richmond T A, Mascher M, Steuernagel B, Scholz U, Ariyadasa R, Spannagl M, Nussbaumer T, Mayer K F X, Taudien S, Platzer M, Jeddeloh J A, Springer N M, Muehlbauer G J, Stein N:

Distribution, functional impact, and origin mechanisms of copy number variation in the barley genome. Genome Biol. 14 (2013) R58. https://dx.doi.org/10.1186/gb-2013-14-6-r58

Colmsee C, Mascher M, Czauderna T, Hartmann A, Schlüter U, Zellerhoff N, Schmitz J, Bräutigam A, Pick T R, Alter P, Gahrtz M, Witt S, Fernie A R, Börnke F, Fahnenstich H, Bucher M, Dresselhaus T, Weber A P, Schreiber F, Scholz U, Sonnewald U:

OPTIMAS-DW: A comprehensive transcriptomics, metabolomics, ionomics, proteomics and phenomics data resource for maize. BMC Plant Biol. 12 (2012) 245. https://dx.doi.org/10.1186/1471-2229-12-245

Mayer K F X, Waugh R, Langridge P, Close T J, Wise R P, Graner A, Matsumoto T, Sato K, Schulman A, Ariyadasa R, Schulte D, Poursarebani N, Zhou R, Steuernagel B, Mascher M, Scholz U, Shi B, Madishetty K, Svensson J T, Bhat P, Moscou M, Resnik J, Muehlbauer G J, Hedley P, Liu H, Morris J, Frenkel Z, Korol A, Bergès H, Taudien S, Felder M, Groth M, Platzer M, Himmelbach A, Lonardi S, Duma D, Alpert M, Cordero F, Beccuti M, Ciardo G, Ma Y, Wanamaker S, Cattonaro F, Vendramin V, Scalabrin S, Radovic S, Wing R, Morgante M, Nussbaumer T, Gundlach H, Martis M, Poland J, Pfeifer M, Moisy C, Tanskanen J, Zuccolo A, Spannagl M, Russell J, Druka A, Marshall D, Bayer M, Swarbreck D, Sampath D, Ayling S, Febrer M, Caccamo M, Tanaka T, Wannamaker S, Schmutzer T, Brown J W S, Fincher G B, Stein N:

A physical, genetic and functional sequence assembly of the barley genome. Nature 491 (2012) 711-716. https://dx.doi.org/10.1038/nature11543

Schlüter U, Mascher M, Colmsee C, Scholz U, Bräutigam A, Fahnenstich H, Sonnewald U:

Maize source leaf adaptation to nitrogen deficiency effects not only nitrogen and carbon metabolism but also control of phosphate homeostasis. Plant Physiol. 160 (2012) 1384-1406. https://dx.doi.org/10.1104/pp.112.204420

Haseneyer G, Schmutzer T, Seidel M, Zhou R, Mascher M, Schon C C, Taudien S, Scholz U, Stein N, Mayer K F, Bauer E:

From RNA-seq to large-scale genotyping - genomics resources for rye (Secale cereale L.). BMC Plant Biol. 11 (2011) 131. https://dx.doi.org/10.1186/1471-2229-11-131