© Leibniz-Institut (IPK)

Mission

© Leibniz Institut (IPK)

The activities of the group cover a wide range of applications related to gene bank material-derived data. We have developed and continue to operate an IT-based plant genetic resources (PGR) information system aimed at facilitating access to PGR for researchers, breeders and other users, as well as to support the Gene Bank’s workflow. In order to ensure the long-term availability of PGR-related data, our major focus is on the further development of both the Genebank Information System (GBIS) and the European Search Catalogue for Plant Genetic Resources (EURISCO). The research group is responsible for assigning permanent and unique identifiers for genebank accessions.

In addition, the group contributes to various international PGR networks and biodiversity informatics initiatives, including the maintenance and improvement of certain international biodiversity-related databases. The group is also responsible for the operation of IPK's meteorology station.

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Projects

GBIS

The Genebank Information System (GBIS) is the central database and software for the management of accessions in the Gene Bank.

The GBIS/M subsystem is used to enter all information into the system and to organise the storage, reproduction, control and shipment of seed and planting material by the Gene Bank's assortment groups.

The second subsystem, GBIS/I, provides worldwide access via the website to the passport data of approx. 151,000 accessions - information on the identity, history, geographical origin and botanical classification of the material - including the North sub-collections in Groß Lüsewitz (potatoes) and Malchow/Poel (oil and fodder plants). Increasingly, characterisation and evaluation data (C&E data) of selected plant species are also published via GBIS/I.

Moreover, it contains an integrated ordering system for Gene Bank material.

Gene Bank data are provided in MCPD format for international PGR databases. Furthermore, the system is connected to IPK-internal and external systems via different interfaces.

 

EURISCO

The European Search Catalogue for Plant Genetic Resources, EURISCO, provides information about more than two million accessions of crop plants and their wild relatives, preserved ex situ by more than 400 institutes in Europe and beyond. EURISCO is being maintained on behalf of the European Cooperative Programme for Plant Genetic Resources (ECPGR). It is based on a network of National Inventories of 43 member countries and represents an important effort for the preservation of world’s agrobiological diversity by providing information about the large genetic diversity kept by the collaborating institutions.

Moreover, EURISCO also assists its member countries in fulfilling legal obligations and commitments, e.g. with respect to the International Treaty on Plant Genetic Resources, the Second Global Plan of Action for Plant Genetic Resources for Food and Agriculture of the United Nation’s Food and Agriculture Organization, or the Convention on Biological Diversity.

The germplasm accessions documented in EURISCO presently comprise more than 6,700 genera and 45,000 species.

 

AGENT

The Activated GEnebank NeTwork (AGENT) project is funded under the Horizon 2020 call "Adding value to plant Genetic Resources" (SFS-28-2019 B). AGENT is a concerted action to activate gene banks. It focuses primarily on wheat and barley and aims to facilitate access to genetic resources for breeders and farmers through standardised protocols for data generation, documentation and provision. Our working group is mainly involved in two work packages aimed at developing guidelines and formats for data production, data exchange and data presentation, and at developing the infrastructure for the management and analysis of genotypic and phenotypic data on genetic resources, respectively.

The AGENT project has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No 862613.

 

INCREASE

The project "Intelligent Collections of Food-Legume Genetic Resources for European Agrofood Systems" (INCREASE), again funded by the EU under SFS-28-2019 B, will improve the management and use of legume genetic resources.

Focusing on chickpea, broad bean, lentil and lupin, INCREASE takes a new approach to the conservation, management and characterisation of genetic resources. These species represent a cross-section in terms of their potential value for sustainable food production. They are all strongly linked to European food traditions and needs and offer significant options for EU agriculture.

With the data management work package, our working group is providing a backbone to the project. Here the working group can capitalise on its dual nature as experts in genetic resource documentation and IT specialists.

The INCREASE project has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No 862862.

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Staff

NameEmailTelephone
Scientists
KellnerDr. Franziska kellner@ipk-gatersleben.de+49 39482 5-283
ORCID iD icon0000-0002-3424-6776
Oppermann Markus opperman@ipk-gatersleben.de+49 39482 5-360
ORCID iD icon0000-0002-3370-3218
WeiseDr. Stephan weise@ipk-gatersleben.de+49 39482 5-744
ORCID iD icon0000-0003-4031-9131
Lab Technicians
Kotni Pragna kotni@ipk-gatersleben.de+49 39482 5-574
Kumar Suman kumar@ipk-gatersleben.de+49 39482 5-563
Ralfs Torben ralfst@ipk-gatersleben.de
Schuetze Gudrun schuetze@ipk-gatersleben.de+49 39482 5-126
Soechting Annedore soechting@ipk-gatersleben.de+49 39482 5-848

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Publications

AuthorTitle
2021

Adam-Blondon A-F, Boichard M, Bozzano M, Goritschnig S, Sharrock S, Sturaro E, van Hintum T, Weise S, Westergren M:

Strategy and priorities for delivering information services to end users. GenRes Bridge – Joining forces for genetic resources and biodiversity management, H2020 project no. 817580 European Commission. (2021) 32 pp.

Badaeva E D, Konovalov F A, Knüpffer H, Fricano A, Ruban A S, Kehel Z, Zoshchuk S A, Surzhikov S A, Neumann K, Graner A, Hammer K, Filatenko A, Bogaard A, Jones G, Özkan H, Kilian B:

Genetic diversity, distribution and domestication history of the neglected GGAtAt genepool of wheat. Theor. Appl. Genet. (2021) Epub ahead of print. dx.doi.org/10.1007/s00122-021-03912-0

Bellucci E, Aguilar O M, Alseekh S, Bett K, Brezeanu C, Cook D, De la Rosa L, Delledonne M, Dostatny D F, Ferreira J J, Geffroy V, Ghitarrini S, Kroc M, Kumar Agrawal S, Logozzo G, Marino M, Mary-Huard T, McClean P, Meglič V, Messer T, Muel F, Nanni L, Neumann K, Servalli F, Străjeru S, Varshney R K, Vasconcelos M W, Zaccardelli M, Zavarzin A, Bitocchi E, Frontoni E, Fernie A R, Gioia T, Graner A, Guasch L, Prochnow L, Opperman M, Susek K, Tenaillon M, Papa R:

The INCREASE project: Intelligent collections of food-legume genetic resources for European agrofood systems. Plant J. 108 (2021) 646-660. https://dx.doi.org/10.1111/tpj.15472

Cortinovis G, Oppermann M, Neumann K, Graner A, Gioia T, Marsella M, Alseekh S, Fernie A R, Papa R, Bellucci E, Bitocchi E:

Towards the development, maintenance, and standardized phenotypic characterization of single-seed-descent genetic resources for common bean. Curr. Protoc. 1 (2021) e133. https://dx.doi.org/10.1002/cpz1.133

Jiang Y, Weise S, Graner A, Reif J C:

Using genome-wide predictions to assess the phenotypic variation of a barley (Hordeum sp.) gene bank collection for important agronomic traits and passport information. Front. Plant Sci. 11 (2021) 604781. https://dx.doi.org/10.3389/fpls.2020.604781

Kroc M, Tomaszewska M, Czepiel K, Bitocchi E, Oppermann M, Neumann K, Guasch L, Bellucci E, Alseekh S, Graner A, Fernie A R, Papa R, Susek K:

Towards development, maintenance, and standardized phenotypic characterization of single-seed-descent genetic resources for lupins. Curr. Protoc. 1 (2021) e191. https://dx.doi.org/10.1002/cpz1.191

Sharma S, Schulthess A W, Bassi F M, Badaeva E D, Neumann K, Graner A, Özkan H, Werner P, Knüpffer H, Kilian B:

Introducing beneficial alleles from plant genetic resources into the wheat germplasm. Biology 10 (2021) 982. https://dx.doi.org/10.3390/biology10100982

Shaw P D, Weise S, Obreza M, Raubach S, McCouch S, Kilian B, Werner P:

Database solutions for genebanks and germplasm collections. In: Ghamkhar K, Williams W, Brown A H D (Eds.): Plant Genetic Resources for the 21st Century. The OMICS Era. : Apple Academic Press Inc. (2021) accepted. ISBN 9781774910825

Weise S:

Data management for preserving genetic diversity: Experiences and challenges. In: Hartmann S, Bachmann-Pfabe S, Byrne S, Feuerstein U, Julier B, Kölliker R, Kopecky D, Roldan-Ruiz I, Ruttink T, Sampoux J-P, Studer B, Vleugels T (Eds.): Exploiting genetic diversity of forages to fulfil their economic and environmental roles: Proceedings of the 34th Meeting of the EUCARPIA Fodder Crops and Amenity Grasses Section in cooperation with the EUCARPIA Festulolium Working Group, Freising, Germany, 06.-08. September 2021. Olomouc: Palacký University Press (2021) 12-16. dx.doi.org/10.5507/vup.21.24459677.03

2020

Herkner J R:

Auswahl und Anwendung geeigneter Metriken zur Messung der Qualität von Passportdaten im MCPD-Format zu pflanzengenetischen Ressourcen in Genbanken am Beispiel des European Search Catalogue for Plant Genetic Resources (EURISCO). (Bachelor Thesis) Merseburg, Hochschule Merseburg (FH), Fachbereich Ingenieur- und Naturwissenschaften (2020) 94 pp.

Lohwasser U, Weise S:

Genetic resources of medicinal and aromatic plants. In: Novak J, Blüthner W-D (Eds.): Medicinal, aromatic and stimulant plants. (Series: Handbook of plant breeding, Vol. 12) Cham: Springer (2020) 1-205. doi.org/10.1007/978-3-030-38792-1_1 ISBN 978-3-030-38791-4

Papoutsoglou E A, Faria D, Arend D, Arnaud E, Athanasiadis I N, Chaves I, Coppens F, Cornut G, Costa B V, Ćwiek-Kupczyńska H, Droesbeke B, Finkers R, Gruden K, Junker A, King G J, Krajewski P, Lange M, Laporte M-A, Michotey C, Oppermann M, Ostler R, Poorter H, Ramı́rez-Gonzalez R, Ramšak Ž, Reif J C, Rocca-Serra P, Sansone S-A, Scholz U, Tardieu F, Uauy C, Usadel B, Visser R G F, Weise S, Kersey P J, Miguel C M, Adam-Blondon A-F, Pommier C:

Enabling reusability of plant phenomic datasets with MIAPPE 1.1. New Phytol. 227 (2020) 260-273. https://dx.doi.org/10.1111/nph.16544

Weise S, Kreide S, Maxted N:

Concept for a possible extension of EURISCO for in situ crop wild relative and on-farm landrace data. Farmer’s Pride – Networking, partnerships and tools to enhance in situ conservation of European plant genetic resources, H2020 project no. 774271 European Commission. (2020) 23 pp.

Weise S, Lohwasser U, Oppermann M:

Document or lose it – on the importance of information management for genetic resources conservation in genebanks. Plants 9 (2020) 1050. https://doi.org/10.3390/plants9081050

2019

Kreide S, Oppermann M, Weise S:

Advancement of taxonomic searches in the European search catalogue for plant genetic resources. Plant Genet. Resour. 17 (2019) 559-561. https://dx.doi.org/10.1017/S1479262119000339

Milner S G, Jost M, Taketa S, Mazón E R, Himmelbach A, Oppermann M, Weise S, Knüpffer H, Basterrechea M, König P, Schüler D, Sharma R, Pasam R K, Rutten T, Guo G, Xu D, Zhang J, Herren G, Müller T, Krattinger S G, Keller B, Jiang Y, González M Y, Zhao Y, Habekuß A, Färber S, Ordon F, Lange M, Börner A, Graner A, Reif J C, Scholz U, Mascher M, Stein N:

Genebank genomics highlights the diversity of a global barley collection. Nat. Genet. 51 (2019) 319-326. https://doi.org/10.1038/s41588-018-0266-x

Oppermann M, Weise S:

Assessment of the quality of accession describing metadata on plant genetic resources. Biodiversity Information Science and Standards 3 (2019) e34973. https://dx.doi.org/10.3897/biss.3.34973

Philipp N, Weise S, Oppermann M, Börner A, Keilwagen J, Kilian B, Arend D, Zhao Y, Graner A, Reif J C, Schulthess A W:

Historical phenotypic data from seven decades of seed regeneration in a wheat ex situ collection. Sci. Data 6 (2019) 137. https://dx.doi.org/10.1038/s41597-019-0146-y

Schulze Brüning R:

Comparison of statistical approaches to predict seed longevity. (Master Thesis) , Justus-Liebig-Universität Gießen und Technische Hochschule Mittelhessen, Department MNI, Life Science Informatics (2019) 54 pp.

Weise S, Kreide S, Oppermann M (compilers):

Report of the EURISCO Training Workshop 2018. National Focal Points Regional Training Workshop, 9–11 October 2018, Gatersleben, Germany. European Cooperative Programme for Plant Genetic Resources, Rome, Italy www.ecpgr.cgiar.org/resources/ecpgr-publications/publication/report-of-the-eurisco-training-workshop-2018-national-focal-points-regional-training-workshop-9-11/. (2019) 13.

2018

Bachmann-Pfabe S, Willner E, Oppermann M, Weise S, Dehmer K J:

Enhancing the sustainable use of Lolium perenne genetic resources from genebanks in plant breeding and research. In: Brazauskas G, Statkevičiūtė G, Jonavičienė K (Eds.): Breeding Grasses and Protein Crops in the Era of Genomics. Cham: Springer (2018) 27-32. dx.doi.org/10.1007/978-3-319-89578-9_5 978-3-319-89578-9

González M Y, Philipp N, Schulthess A W, Weise S, Zhao Y, Börner A, Oppermann M, Graner A, Reif J C:

Unlocking historical phenotypic data from an ex situ collection to enhance the informed utilization of genetic resources of barley (Hordeum sp.). Theor. Appl. Genet. 131 (2018) 2009-2019. https://dx.doi.org/10.1007/s00122-018-3129-z

González M Y, Weise S, Zhao Y, Philipp N, Arend D, Börner A, Oppermann M, Graner A, Reif J C, Schulthess A W:

Unbalanced historical phenotypic data from seed regeneration of a barley ex situ collection. Sci. Data 5 (2018) 180278. https://dx.doi.org/10.1038/sdata.2018.278

Julier B, Skøt L, Weise S, Karagić Ð, Roldán-Ruiz I, Barre P, Lloyd D:

Breeding forage and grain legumes to increase EU’s and China’s protein self-sufficiency. In: Brazauskas G, Statkevičiūtė G, Jonavičienė K (Eds.): Breeding Grasses and Protein Crops in the Era of Genomics. Cham: Springer (2018) 103-108. dx.doi.org/10.1007/978-3-319-89578-9_18 978-3-319-89578-9

Palmé A, Weise S, Willner E, Marum P, Sampoux J-P (compilers):

Forages WG report for phase IX (2014–2018). 15th Steering Committee meeting, 15–17 May 2018, Thessaloniki, Greece. European Cooperative Programme for Plant Genetic Resources, Rome, Italy www.ecpgr.cgiar.org/fileadmin/templates/ecpgr.org/upload/SC_2018_Thessaloniki/WG_Chairs_reports/Forages_WG_Chair_s_report_for_SC_-_for_web.pdf. (2018) 7 pp.

Palmé A, Willner E, Marum P, Weise S (compilers):

AEGIS progress and improved access to data on European Forage PGR (ForageDataAccess). Activity Report of the ECPGR Activity Grant Scheme – Second Call, 2015. European Cooperative Programme for Plant Genetic Resources (2018) 17 pp. www.ecpgr.cgiar.org/fileadmin/bioversity/publications/pdfs/ActivtyReport_ECPGRForagesDataAccess_final_web_28_06_2018.pdf

Philipp N, Weise S, Oppermann M, Börner A, Graner A, Keilwagen J, Kilian B, Zhao Y S, Reif J C, Schulthess A W:

Leveraging the use of historical data gathered during seed regeneration of an ex situ genebank collection of wheat. Front. Plant Sci. 9 (2018) 609. https://dx.doi.org/10.3389/Fpls.2018.00609

Weise S:

EURISCO progress report (April 2014 – April 2018). ECPGR Phase IX, 15th Steering Committee meeting, 15–17 May 2018, Thessaloniki, Greece. European Cooperative Programme for Plant Genetic Resources, Rome, Italy www.ecpgr.cgiar.org/fileadmin/templates/ecpgr.org/upload/SC_2018_Thessaloniki/Progress_report_EURISCO_2014-2018.pdf. (2018) 15.

Weise S, Oppermann M:

Best practices for setting up a repository of phenotypic data for European germplasm holdings. Biodiversity Information Science and Standards 2 (2018) e25223. https://dx.doi.org/10.3897/biss.2.25223

Zencirci N, Yılmaz H, Garaybayova N, Karagöz A, Kilian B, Özkan H, Hammer K, Knüpffer H:

Mirza (Hacızade) Gökgöl (1897–1981): the great explorer of wheat genetic resources in Turkey. Genet. Resour. Crop Evol. 65 (2018) 693-711. https://dx.doi.org/10.1007/s10722-018-0606-9

2017

Badaeva E D, Knüpffer H, Mitrofanova O P, Kilian B:

Karyotype diversity of emmer wheat helps reconstructing possible migration routes of the crop. In: Proc. 13th International Wheat Genetics Symposium, April 23-28, 2017, Tulln, Austria. (2017) 129-131.

Bolger M, Schwacke R, Gundlach H, Schmutzer T, Chen J, Arend D, Oppermann M, Weise S, Lange M, Fiorani F, Spannagl M, Scholz U, Mayer K, Usadel B:

From plant genomes to phenotypes. J. Biotechnol. 261 (2017) 46-52. https://dx.doi.org/10.1016/j.jbiotec.2017.06.003

Maeße M:

Entwicklung eines Prototyps zur Erfassung und Verarbeitung von inhomogenen phänotypischen Daten. (Bachelor Thesis) Wernigerode, Hochschule Harz (2017) 79 pp.

Schmutzer T, Bolger M E, Rudd S, Chen J, Gundlach H, Arend D, Oppermann M, Weise S, Lange M, Spannagl M, Usadel B, Mayer K F X, Scholz U:

Bioinformatics in the plant genomic and phenomic domain: The German contribution to resources, services and perspectives. J. Biotechnol. 261 (2017) 37-45. https://dx.doi.org/10.1016/j.jbiotec.2017.07.006

Velcheva N, Knüpffer H, Weise S:

Bulgarian national inventory in international plant genetic resources databases. In: Cholakov T, Uzundzhalieva K (Eds.): Proceedings, International Conference “135 Years Agricultural Science in Sadovo and 40 Years Institute of Plant Genetic Resources – Sadovo”, Plovdiv, Bulgaria, 29–30 May 2017. (2017) 137-144. ISBN 978-619-90842-0-5

Weise S:

EURISCO Newsletter. Dezember 2017. IPK Gatersleben, Germany. (2017) 3 pp. eurisco.ipk-gatersleben.de/apex/EURISCO_WEB.download_file.

Weise S:

EURISCO Newsletter. August 2017. IPK Gatersleben, Germany. (2017) 2 pp. eurisco.ipk-gatersleben.de/apex/EURISCO_WEB.download_file.

Weise S, Knüpffer H, Maggioni L, Adam-Blondon A F (compilers):

Report of the EURISCO Training Workshop 2016, National Focal Points Regional Training Workshop for Western Europe, 12–14 October 2016, Angers, France. European Cooperative Programme for Plant Genetic Resources, Rome, Italy www.ecpgr.cgiar.org/working-groups/documentation-information/eurisco-training-workshop-2016/. (2017) 13.

Weise S, Oppermann M, Maggioni L, van Hintum T, Knüpffer H:

EURISCO: The European search catalogue for plant genetic resources. Nucleic Acids Res. 45 (2017) D1003-D1008. https://dx.doi.org/10.1093/nar/gkw755

Weise S, Oppermann M (compilers):

Report of the EURISCO Training Workshop 2017, National Focal Points Regional Training Workshop for Central Europe, 12–14 September 2017, Gatersleben, Germany. European Cooperative Programme for Plant Genetic Resources, Rome, Italy www.ecpgr.cgiar.org/working-groups/documentation-information/eurisco-national-focal-points-training-workshop-2017/. (2017) 13.

2016

Badaeva E D, Ruban A S, Zoshchuk S A, Surzhikov S A, Knüpffer H, Kilian B:

Molecular cytogenetic characterization of Triticum timopheevii chromosomes provides new insight on genome evolution of T. zhukovskyi. Plant Syst. Evol. 302 (2016) 943-956. https://dx.doi.org/10.1007/s00606-016-1309-3

Ćwiek-Kupczyńska H, Altmann T, Arend D, Arnaud E, Chen D, Cornut G, Fiorani F, Frohmberg W, Junker A, Klukas C, Lange M, Mazurek C, Nafissi A, Neveu P, van Oeveren J, Pommier C, Poorter H, Rocca-Serra P, Sansone S-A, Scholz U, van Schriek M, Seren Ü, Usadel B, Weise S, Kersey P, Krajewski P:

Measures for interoperability of phenotypic data: minimum information requirements and formatting. Plant Methods 12 (2016) 44. https://dx.doi.org/10.1186/s13007-016-0144-4

Jalli M, Benková M, Weise S, Leistrumaité A, Placinta D, Legzdina L, Zaczyński M, Švec M, Didier A, Neykov N, Knüpffer H, Jahoor A, Svensson J:

Identification and updating of C&E data in EBDB of AEGIS Hordeum (HordEva). Activity Report. ECPGR Activity Grant Scheme – First Call, 2014. European Cooperative Programme for Plant Genetic Resources (ECPGR) (2016) 20 pp. www.ecpgr.cgiar.org/fileadmin/bioversity/publications/pdfs/Hordeva_final_report.pdf

Knüpffer H:

Plant genetic resources from the Balkan Peninsula in the world’s genebanks. J. Agric. Food Environ. Sci. 69 (2016) 53-68.

Shaaf S, Sharma R, Baloch F S, Badaeva E D, Knüpffer H, Kilian B, Özkan H:

The grain Hardness locus characterized in a diverse wheat panel (Triticum aestivum L.) adapted to the central part of the Fertile Crescent: genetic diversity, haplotype structure, and phylogeny. Mol. Genet. Genomics 291 (2016) 1259-1275. https://dx.doi.org/10.1007/s00438-016-1180-5

Weise S:

EURISCO Newsletter. Dezember 2016. IPK Gatersleben, Germany. (2016) 2 pp. eurisco.ipk-gatersleben.de/apex/EURISCO_WEB.download_file

Weise S:

EURISCO Newsletter. August 2016. IPK Gatersleben, Germany. (2016) 2 pp. eurisco.ipk-gatersleben.de/apex/EURISCO_WEB.download_file

2015

Badaeva E D, Keilwagen J, Knüpffer H, Waßermann L, Dedkova O S, Mitrofanova O P, Kovaleva O N, Liapunova O A, Pukhalskiy V A, Özkan H, Graner A, Willcox G, Kilian B:

Chromosomal passports provide new insights into diffusion of emmer wheat. PLoS One 10 (2015) e0128556. https://dx.doi.org/10.1371/journal.pone.0128556

Hammer K, Knüpffer H:

Genetic resources of Triticum. In: Ogihara Y, Takumi S, Handa H (Eds.): Advances in wheat genetics: from genome to field: proceedings of the 12th International Wheat Genetics Symposium (Yokohama-shi, Japan). Tokyo: Springer (2015) 23-32. dx.doi.org/10.1007/978-4-431-55675-6_3 ISBN 978-4-431-55674-9

Knüpffer H, Zencirci N, Yılmaz H, Garaybayova N, Karagöz A, Kilian B, Özkan H, Hammer K:

Mirza Gökgöl – A pioneer of wheat genetic resources from Turkey. AMEA Genetik Ehtiyatlar İnstitutunun Elmi Əsərləri (Azerbaijan National Academy of Sciences Genetic Resources Institute Scientific Works) 5 (2015) 227-231.

Krajewski P, Chen D, Ćwiek H, van Dijk A D J, Fiorani F, Kersey P, Klukas C, Lange M, Markiewicz A, Nap J P, van Oeveren J, Pommier C, Scholz U, van Schriek M, Usadel B, Weise S:

Towards recommendations for metadata and data handling in plant phenotyping. J. Exp. Bot. 66 (2015) 5417-5427. https://dx.doi.org/10.1093/jxb/erv271

Kywan K:

Analyzing gene centres with the help of the checklist method – the case of Syria. (PhD Thesis) Witzenhausen, Universität Kassel, Fachbereich 11 Ökologische Agrarwissenschaften, Institut für Nutzpflanzenkunde (2015) 146 (+ IX Anhang) pp.

Oppermann M, Weise S, Dittmann C, Knüpffer H:

GBIS: the information system of the German Genebank. Database 2015 (2015) bav021. https://dx.doi.org/10.1093/database/bav021

Schmutzer T, Samans B, Dyrszka E, Ulpinnis C, Weise S, Stengel D, Colmsee C, Lespinasse D, Micic Z, Abel S, Duchscherer P, Breuer F, Abbadi A, Leckband G, Snowdon R, Scholz U:

Species-wide genome sequence and nucleotide polymorphisms from the model allopolyploid plant Brassica napus. Sci. Data 2 (2015) 150072. https://dx.doi.org/10.1038/sdata.2015.72

Schreiber F, Bader G D, Golebiewski M, Hucka M, Kormeier B, Le Novère N, Myers C, Nickerson D, Sommer B, Waltemath D, Weise S:

Specifications of standards in systems and synthetic biology. J. Integr. Bioinform. 12 (2015) 258. https://dx.doi.org/10.2390/biecoll-jib-2015-258

Weise S:

EURISCO Newsletter. December 2015. IPK Gatersleben, Germany. (2015) 2 pp. eurisco.ipk-gatersleben.de/apex/EURISCO_WEB.download_file

Weise S, Ibraliu A, Knüpffer H (compilers) (Eds.):

Report of the EURISCO Training Workshop 2015. National Focal Points Regional Training Workshop for Southeast Europe, 19–21 May 2015, Tirana, Albania. European Cooperative Programme for Plant Genetic Resources, Rome, Italy www.ecpgr.cgiar.org/working-groups/documentation-information/eurisco-training-workshop-2015/. (2015) 27 pp.

2014

Arend D, Colmsee C, Knüpffer H, Oppermann M, Scholz U, Schüler D, Weise S, Lange M:

Data management experiences and best practices from the perspective of a plant research institute. In: Galhardas H, Rahm E (Eds.): Data integration in the life sciences: 10th international conference, DILS 2014, Lisbon, Portugal, July 17-18, 2014; proceedings (Series: Lecture Notes in Computer Science, Vol. 8574) Berlin [u.a.]: Springer (2014) 41-49. dx.doi.org/10.1007/978-3-319-08590-6_4 ISBN 978-3-319-08589-0

Esch M, Chen J, Weise S, Hassani-Pak K, Scholz U, Lange M:

A query suggestion workflow for life science IR-systems. J. Integr. Bioinform. 11 (2014) 237. https://dx.doi.org/doi:10.2390/biecoll-jib-2014-237

Keilwagen J, Kilian B, Özkan H, Babben S, Perovic D, Mayer K F, Walther A, Poskar C H, Ordon F, Eversole K, Börner A, Ganal M, Knüpffer H, Graner A, Friedel S:

Separating the wheat from the chaff - a strategy to utilize plant genetic resources from ex situ genebanks. Sci. Rep. 4 (2014) 5231. https://dx.doi.org/10.1038/srep05231

Kilian B, Knüpffer H, Hammer K:

Elisabeth Schiemann (1881-1972): a pioneer of crop plant research, with special reference to cereal phylogeny. Genet. Resour. Crop Evol. 61 (2014) 89-106. https://dx.doi.org/10.1007/s10722-013-0017-x

2013

Keller E R J, Oppermann M:

The ECPGR Allium Database. ealldb.ipk-gatersleben.de (2013).

Pistrick K, Knüpffer H:

DFG-Projekt zur Digitalisierung des IPK-Herbariums (DFG project on IPK Herbarium digitalization). IPK Journal 22 (2013) 12.

Rodriguez M, Rau D, Angioi S A, Bellucci E, Bitocchi E, Nanni L, Knüpffer H, Negri V, Papa R, Attene G:

European Phaseolus coccineus L. landraces: Population structure and adaptation, as revealed by cpSSRs and phenotypic analyses. PLoS One 8 (2013) e57337. https://dx.doi.org/10.1371/journal.pone.0057337

Thomas K, Thanopoulos R, Knüpffer H, Bebeli P J:

Plant genetic resources in a touristic island: the case of Lefkada (Ionian Islands, Greece). Genet. Resour. Crop Evol. 60 (2013) 2431-2455. https://dx.doi.org/10.1007/s10722-013-0011-3

2012

Colmsee C, Keller E R J, Zanke C, Senula A, Funke T, Oppermann M, Weise S, Scholz U:

The Garlic and Shallot Core Collection image database of IPK presenting two vegetatively maintained crops in the Federal ex situ genebank for agricultural and horticultural crops at Gatersleben, Germany. Genet. Resour. Crop Evol. 59 (2012) 1407-1415. https://dx.doi.org/10.1007/s10722-011-9768-4

Endresen D T F, Knüpffer H:

The Darwin Core extension for genebanks opens up new opportunities for sharing germplasm data sets. Biodivers. Informatics 8 (2012) 12-29.

Hanelt P, Knüpffer H, Hammer K:

Erna Bennett (5 August 1925- 3 January 2012). Genet. Resour. Crop Evol. 59 (2012) 967-970. https://dx.doi.org/10.1007/s10722-012-9872-0

Keller E R J, Oppermann M:

The ECPGR Allium Database. ealldb.ipk-gatersleben.de (2012).

Kilian B, Özkan H, Shaaf S, Hübner S, Pasam R K, Sharma R, Neumann K, Weißgerber W, Konovalov F A, Keilwagen J, Friedel S, Knüpffer H, von Korff M, Coupland G, Graner A:

Comparing genetic diversity within a crop and its wild progenitor: a case study for barley. In: Maxted N, Dulloo M E, Ford-Lloyd B V, Frese L, Iriondo J M, Pinheiro de Carvalho M A A (Eds.): Agrobiodiversity conservation: securing the diversity of crop wild relatives and landraces. Wallingford [u.a.]: CABI Publishing (2012) 186-192. ISBN 978-1-84593-851-2

Thomas K, Thanopoulos R, Knüpffer H, Bebeli P J:

Plant genetic resources of Lemnos (Greece), an isolated island in the Northern Aegean Sea, with emphasis on landraces. Genet. Resour. Crop Evol. 59 (2012) 1417-1440. https://dx.doi.org/10.1007/s10722-011-9770-x

Vincent H, von Bothmer R, Knüpffer H, Amri A, Konopka J, Maxted N:

Genetic gap analysis of wild Hordeum taxa. Plant Genet. Resour. 10 (2012) 242-253. https://dx.doi.org/10.1017/S1479262112000317

Weise S, Harrer S, Grosse I, Knüpffer H, Willner E:

The European Poa Database (EPDB). poa.ipk-gatersleben.de (2012).

2011

Endresen D T F, Knüpffer H:

The Darwin Core extension for genebanks opens up new opportunities for sharing genebank datasets. In: Endresen, D.T.F.: Utilization of plant genetic resources. A lifeboat to the gene pool. PhD thesis, Faculty of Life Sciences, Univ. Copenhagen (2011) 121-142.

Hovhannisyan N A, Dulloo M E, Yesayan A H, Knüpffer H, Amri A:

Tracking of powdery mildew and leaf rust resistance genes in Triticum boeoticum and T. urartu, wild relatives of common wheat. Czech. J. Genet. Plant Breed. 47 (2011) 45-57.

Knüpffer H, Maggioni L, Jalli M, Kolodinska A, Fasoula D, Lipman E:

Report of a working group on barley. Seventh meeting, 10-12 May 2011, Nicosia, Cyprus. Bioversity International, Rome, Italy. ii+43 pp. www.ecpgr.cgiar.org/fileadmin/www.ecpgr.cgiar.org/NW_and_WG_UPLOADS/Barley_7_Cyprus/Barley_7_Cyprus_revised210911.pdf (2011).

Maggioni L, Katsiotis A, Knüpffer H, Kleijer G, Lipman E:

Report of a Cereals Network. Second Meeting, 21-24 April 2008, Foça, Turkey. May 2011. Bioversity International, Rome, Italy (2011) iv+64 pp. www.ecpgr.cgiar.org/fileadmin/bioversity/publications/pdfs/1437_Report%20of%20a%20cereals%20network%20second%20meeting%2021-24%20April%202008%20Fo%C3%A7a%20Turkey.pdf (2011).

Weise S, Harrer S, Grosse I, Knüpffer H, Willner E:

The European Poa Database (EPDB). poa.ipk-gatersleben.de (2011).

2010

Höppner F, Knüpffer H:

Status report on the German collections of flax and hemp. In: Report, ECP/GR Fibre Crops (Flax and Hemp) Working Group 1st meeting, Wageningen, The Netherlands, 14 – 16 June 2006. www.ecpgr.cgiar.org/Workgroups/Flax_Hemp/Flax%20Presentations%202006/Germany_Country_report_final.pdf (2010).

Knüpffer H:

The Balkan Collections 1941-1942 of Hans Stubbe in the Gatersleben Gene Bank. Czech. J. Genet. Plant Breed. 46 (2010) S27-S33.

Knüpffer H:

Plant genetic resources from Greece preserved in the German Genebank in Gatersleben, with emphasis on Hans Stubbe’s Balkan collections in 1941-1942. In: Πρακτικά 12ου Συνεδρίου της Ελληνικής Επιστημονικής Εταιρείας Γενετικής Βελτίωσης Φυτών, 2010. [Proceedings of the 12th Panehellenic Congress of the Hellenic Scientific Society of Plant Breeding & Genetics, 8-10 October 2008, Naoussa, Greece], CD-ROM. (2010) 16-29.

Oppermann M, Keilwagen J, Knüpffer H, Friedel S, Börner A:

Validation, analysis and aggregation of long-term trait observation data of genebank material. In: WEITZMANN, A.L. (ed.), Proceedings of TDWG (2010). Woods Hole, Massachusetts, USA (2010) 52-53. www.vliz.be/imisdocs/publications/215525.pdf (2010).

van Hintum T, Knüpffer H:

Current taxonomic composition of European genebank material documented in EURISCO. Plant Genet. Resour. 8 (2010) 182-188. https://dx.doi.org/10.1017/S1479262110000158

Weise S, Biermann N, Flemming S, Vorwald J, van Hintum T, Knüpffer H, Grosse I:

Proposal for improvement of PGR data exchange through XML. In: Proc. EPGRIS Final Conference, 11-13 September 2003, Prague, Czech Republic. International Plant Genetic Resources Institute (IPGRI). www.ecpgr.cgiar.org/Networks/Info_doc/FinalMeetingPresentations/Papers/Bierman_IPK_v0.14.doc (2010).

Weise S, Harrer S, Grosse I, Knüpffer H, Willner E:

The European Poa Database (EPDB). poa.ipk-gatersleben.de (2010).

2009

Hovhannisyan N, Dulloo M E, Yesayan A, Röder M S, Knüpffer H, Amri A, Danielian A M:

Wild relatives of wheat as sources of useful genes. In Vitro Cell. Dev. Biol. - Animal 45 (2009) S82-S83.

Knüpffer H:

Triticeae genetic resources in ex situ genebank collections. In: Feuillet C, Muehlbauer G (Eds.): Genetics and genomics of the Triticeae, 1st ed. (Series: Plant genetics and genomics: crops and models, Vol. 7) New York, NY: Springer (2009) 31-79. dx.doi.org/10.1007/978-0-387-77489-3_2 ISBN 978-0-387-77488-6

Maggioni L, Katsiotis A, Knüpffer H, Kleijer G:

Report of a Cereals Network. Second Meeting, 21.-24.04.2008, Foça/Turkey. www.ecpgr.cgiar.org/Networks/Cereals/Cereals_Network_2ndMeeting_Draft_Feb09.pdf (2009).

2008

Anonymous (including H. Knüpffer):

Cereals network meets in Turkey. Bioversity Newsl. Europe 36 (2008) 8.

Kell S P, Knüpffer H, Jury S L, Ford-Lloyd B V, Maxted N:

Crops and wild relatives of the Euro-Mediterranean region: making and using a conservation catalogue. In: Maxted N, Ford-Lloyd B, Kell S P, Iriondo J, Dulloo E, Turok J (Eds.): Crop wild relative conservation and use. Wallingford: CABI Publishing (2008) 69-109. ISBN 978-1-8459-3099-8

Lange M, Rutkowski T, Stephanik A, Steuernagel B, Scholz U:

FLAREX – The IPK array experiment database. pgrc.ipk-gatersleben.de/flarex/ (2008).

Narang R:

Mansfeld’s world database of agricultural and horticultural crops. Transformation von Visual FoxPro nach Oracle, Migration in das „Berliner Modell“ und Neuentwicklung des Webinterface (2007-2008). mansfeld.ipk-gatersleben.de (2008).

2007

Kell S P, Jury S L, Knüpffer H, Ford-Lloyd B V, Maxted N:

PGR Forum: serving the crop wild relative user community. Bocconea 21 (2007) 413-421.

Kleijer G, Häner R, Knüpffer H:

Triticale and Rye Genetic Resources in Europe: Ad hoc Meeting, 28 September 2006, Nyon, Switzerland. www.ecpgr.cgiar.org/Networks/Cereals/Triticale_Rye_Sept06.pdf (2007).

Knüpffer H:

Anbindung des Genbankinformationssystems (GBIS) als Data Provider für die Global Biodiversity Information Facility (GBIF), mit Hilfe der BioCASE-Provider-Software. www.gbif.org (2007).

Kuenne C, Grosse I, Matthies I, Scholz U, Sretenovic-Rajicic T, Stein N, Stephanik A, Steuernagel B, Weise S:

Using data warehouse technology in crop plant bioinformatics. J. Integr. Bioinform. 4 (2007) 88. https://dx.doi.org/10.2390/biecoll-jib-2007-88

Logozzo G, Donnoli R, Macaluso L, Papa R, Knüpffer H, Zeuli P S:

Analysis of the contribution of Mesoamerican and Andean gene pools to European common bean (Phaseolus vulgaris L.) germplasm and strategies to establish a core collection. Genet. Resour. Crop Evol. 54 (2007) 1763-1779. https://dx.doi.org/10.1007/s10722-006-9185-2

Weise S, Harrer S, Grosse I, Knüpffer H, Willner E:

The European Poa Database (EPDB). Plant Genet. Resour. Newsl. 150 (2007) 64-70.

2006

Anonymus (incl H Knüpffer):

Barley: evaluation and conservation of barley genetic resources to improve their accessibility to breeders in Europe. In: Commission E (Ed.): Genetic resources in agriculture: a summery of the projects co-financed under Council regulation (EC) No 1467/94. Community programme 1994-99. : Office for Official Publications of the European Communities, Luxembourg/Luxembourg (2006) 28-31.

Anonymus (incl H Knüpffer):

New search portal for IPKs genebank goes on-line. IPGRI Newsl. for Europe 33 (2006) 17.

Börner A, Freytag U, Sperling U:

Analysis of wheat disease resistance data originating from screenings of Gatersleben genebank accessions during 1933 and 1992. (Erratum: Genet. Resour. Crop Evol. 53 (6) 2006, 1307). Genet. Resour. Crop Evol. 53 (2006) 453-465. https://dx.doi.org/10.1007/s10722-004-1158-8

Endresen D T F, Bäckerman J, Knüpffer H, Gaiji S:

Integrating standards. 3.1. Exchange of germplasm datasets with PyWrapper/BioCASE. In: Belbin L, Rissoné A, Weitzman A (Eds.): Proceedings of TDWG. Abstracts of the 2006 Annual Conference of Biodiversity Information Standards (TDWG), St. Louis, Missouri, U.S.A., 15-22 October 2006, . St. Louis: Missouri Botanical Garden (2006) 8. ISBN 1-930723-56-3

Funke T, Weise S, Knüpffer H, Grosse I:

Ein neues Gesicht für die Europäische Gerstendatenbank (EBDB). Vortr. Pflanzenzücht. 70 (2006) 79-80.

Häner R, Kleijer G, Knüpffer H:

ECPGR ad hoc triticale and rye meeting. IPGRI Newsl. for Europe 33 (2006) 5.

Hartung K, Piepho H P, Knüpffer H:

Analysis of genebank evaluation data by using geostatistical methods. Genet. Resour. Crop Evol. 53 (2006) 737-751. https://dx.doi.org/10.1007/s10722-004-4716-1

Knüpffer H:

New search portal for IPKs genebank (Gatersleben, Germany) is online. (Plant Breed. News, 31. July 2006, edition 169). www.fao.org/WAICENT/FAOINFO/AGRICULT/AGP/AGPC/doc/services/pbn.html (2006).

Knüpffer H, Bulinska-Radomska Z, Bettencourt E:

Workshop on inventorying European cultivated plant species. IPGRI Newsl. for Europe 33 (2006) 14.

Knüpffer H, Döll S, Vorwald J:

50 Jahre Gaterslebener Sammelreisen - Vergleich des gesammelten Materials mit dem jetzigen Genbankbestand. Vortr. Pflanzenzücht. 70 (2006) 54-60.

Oppermann M, Knüpffer H:

GBIS- das neue Genbankinformationssystem am IPK. Vortr. Pflanzenzücht. 70 (2006) 47-49.

Oppermann M, Koller D, Winterberg T:

Praxiserfahrungen mit dem Oracle application development framework (ADF). Javaspektrum 1 (2006) 26-39.

Weise S, Knüpffer H, Vorwald J, Scholz U, Grosse I:

Integration von phänotypischen Daten in das Plant Data Warehouse. Vortr. Pflanzenzücht. 70 (2006) 84-86.

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