AGENT consortium, Stein N, Reif J:
AGENT-DArTseq-Wheat-WBF-Agroscope. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB81686 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB81686
AGENT consortium, Stein N, Reif J:
AGENT-GBS-barley-checks. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB85083 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB85083
AGENT consortium, Stein N, Reif J:
AGENT-GBS-barley-BGR001. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB85461 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB85461
AGENT consortium, Stein N, Reif J:
AGENT-GBS-barley-SVK001. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB85471 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB85471
AGENT consortium, Stein N, Reif J:
AGENT-GBS-barley-ROM007. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB85470 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB85470
AGENT consortium, Stein N, Reif J:
AGENT-GBS-barley-ROM002. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB85469 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB85469
AGENT consortium, Stein N, Reif J:
AGENT-GBS-barley-POL003. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB85468 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB85468
AGENT consortium, Stein N, Reif J:
AGENT-GBS-barley-NLD037. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB85467 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB85467
AGENT consortium, Stein N, Reif J:
AGENT-GBS-barley-LBN002. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB85466 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB85466
AGENT consortium, Stein N, Reif J:
AGENT-GBS-barley-ISR003. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB85465 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB85465
AGENT consortium, Stein N, Reif J:
AGENT-GBS-barley-ESP004. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB85464 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB85464
AGENT consortium, Stein N, Reif J:
AGENT-GBS-barley-DEU146. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB85463 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB854643
AGENT consortium, Stein N, Reif J:
AGENT-GBS-barley-CZE122. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB85462 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB85462
Avni R, Mascher M:
PepsiCo OT3098 hexaploid oat version 2 genome assembly. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB76239 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB76239
Blattner F R, Bagheri A, Ala N, Harpke D:
Merging GBS datasets to analyze the phylogeny of western Eurasian Tilia (lime, basswood). e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben (2025) https://dx.doi.org/10.5447/IPK/2025/10
Chen E:
Unveiling centromeric retrotransposon dynamics through a near-complete rye genome assembly. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB91463 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB91463
Chen J, Kim G, Houben A:
Whole-genome sequencing of wheat with different rye B chromosome variants and different Aegilops speltoides with B chromosomes. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB89395 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB89395
Dehmer K:
Exploring the genetic diversity of the IPK Medicago germplasm using GBS. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB89658 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB89658
Gundala R:
Whole-genome shotgun resequencing of 160 wheat elite lines. European Variation Archive (EVA) at EMBL-EBI under accession number PRJEB92007 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB92007
Gundala R, Reif J:
Whole-genome shotgun resequencing of 160 wheat elite lines. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB89343 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB89343
Guo Y:
A haplotype-based evolutionary history of barley domestication. European Variation Archive (EVA) at EMBL-EBI under accession number PRJEB79752 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB79752
Guo Y:
Ancestral haplotype groups in a diversity panel of wild and domesticated barley (Hordeum vulgare). e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben (2025) https://dx.doi.org/10.5447/IPK/2025/7
Guo Y, Mascher M:
Wild barley diversity panel. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB65046 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB65046
Hajirezaei M R, von Wirén N:
Transcriptional changes in Hydrangea varieties with varying levels of the natural sweetener phyllodulcin. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB79406 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB79406
Haupt M:
AGENT: Atlas of barley. European Variation Archive (EVA) at EMBL-EBI under accession number PRJEB94862 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB94862
Hazarika M:
Phenotypic variability and genome-wide association studies in potato (Solanum tuberosum L.) for phosphorus efficiency. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB81675 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB81675
Heuermann M C:
A phenotypic dataset of natural variation in image-related traits by high-throughput phenotyping of 347 MAGIC maize lines and their 9 founder lines in the CAPITALISE project. e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben (2025) https://dx.doi.org/https://dx.doi.org/10.5447/IPK/2025/0
Jhingan S:
Genetic mapping of the pendant awn trait using Genotyping-by-Sequencing of F2 individuals segregating for the mutant phenotype. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB97226 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB97226
Jhingan S:
Whole-genome re-sequencing of EMS induced mutants and wild-type controls to identify mutant specific variants conferring the pendant awn trait. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB97227 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB97227
Kalidass M, Jarubula V, Ratnikava M, Chandra J, Le Goff S, Probst A, Esposito S, Grasser K, Bruckmann A, Gagneux J, Prosée R, Rutten T, Schubert V, Demidov D, Lechner E, Steiner F, Genschik P, Lermontova I:
KNL2 degradation is regulated by APC/C ubiquitin ligase. ProteomeXchange Consortium via the PRIDE partner repository under accession number PXD051741 (2025) https://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD051741
Kalidass M, Vaculíková J, Chandra J, Králová B, Jarubula V, Kara Öztürk S, Demidov D, Schubert V, Potesil D, Palecek J, Lermontova I:
The C-terminal SUMOylation of αKNL2 facilitates its centromeric localization and interaction with CENH3. ProteomeXchange Consortium via the PRIDE partner repository under accession number PXD067383 (2025) https://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD067383
Kuo Y-T, Houben A:
Histone mark-ChIP-seq to determine the genome organization of Chamaelirium luteum with large centromeres. ArrayExpress at EMBL-EBI under accession number E-MTAB-16192 (2025) https://www.ebi.ac.uk/biostudies/arrayexpress/studies/E-MTAB-16192
Kuo Y-T, Houben A:
CENH3-ChIP-seq of Chamaelirium luteum to determine the size and sequence composition of the large centromeres. NCBI GEO under accession number GSE285103 (2025) https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE285103
Kuo Y-T, Houben A:
Whole genome shotgun sequences of Chamaelirium luteum. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB82607 (2025) https://www.ebi.ac.uk/ena/data/view/PRJEB82607
Kuo Y-T, Houben A:
RNA-Seq Analyses of Chamaelirium luteum. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB82608 (2025) https://www.ebi.ac.uk/ena/data/view/PRJEB82608
Kuo Y-T, Houben A:
Mono- to holocentromere evolution [Data set]. Zenodo (2025) https://doi.org/10.5281/zenodo.15182433
Lange M, Le Floch E, Pachipala M, Etukala J R, Weise S, Arend D, Alaux M, Bassi F M, Boczkowska M, Bolc P, Brouwer P M, Chalhoub B, de Blok R, Desheva G, Galit I, Groenink W, Hauptvogel R, Hoekstra R, Kehel Z, Kowalik R, Kumar S, Kyosev B, Marinciu C M, Martín-Lammerding D, Motor A, Pallero-Baena M, Petcu E-I, Pietrusińska-Radzio A, Podyma W, Pommier C, Puchta Jasińska M, Puła S, Reiniers L, Ruff J, Ruiz M, Sansoni F, Schierscher B, Serban G, Serex S, Vaccino P, van Treuren R, Mandea V, Vasilescu L, Visioni A, Wijnker T, Zaim M, Reif J C, Berkner M O, Adam-Blondon A-F, Flores R-G, Kersey P:
Curated wheat historical phenotypic data from European Genebanks. e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben (2025) https://dx.doi.org/10.5447/IPK/2025/11
Li G:
Single-nucleotide polymorphism matrices for parental lines of a large diversity hybrid panel of wheat (Triticum aestivum L.). European Variation Archive (EVA) at EMBL-EBI under accession number PRJEB87554 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB87554
Li G, Reif J:
Heterosis research: parental lines - WGS. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB82869 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB82869
Mascher M:
Global genomic diversity of hexaploid oat. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB63645 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB63645
Mascher M:
Exome capture sequencing data for barley (Hordeum vulgare) gravitropism mutant TM194. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB44451 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB44451
Mascher M:
Chromosome-scale assembly of Avena byzantina accession PI 258586. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB45067 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB45067
Mascher M:
Avena sativa cv. Leggett assembly. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB62638 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB62638
Mascher M:
Avena sativa cv. Morgan assembly. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB62639 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB62639
Mascher M:
Avena sativa cv. Williams assembly. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB62640 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB62640
Mascher M, Feng J-W:
Pangenome graphs and variant matrix derived from haplotype-resolved genome sequence assemblies of Hordeum bulbosum. e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben (2025) https://dx.doi.org/10.5447/IPK/2025/4
Oppermann M:
IPK genebank accessions passport data snapshot 2025-03-10. e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben (2025) https://dx.doi.org/10.5447/IPK/2025/2
Oppermann M:
IPK genebank accessions passport data snapshot 2025-05-26. e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben (2025) https://dx.doi.org/10.5447/IPK/2025/5
Oppermann M:
IPK genebank accessions passport data snapshot 2025-10-13. e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben (2025) https://dx.doi.org/10.5447/IPK/2025/13
Otto L G:
GBS data for largely Central-European commercial common snap bean cultivars and landraces. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB79939 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB79939
PanOat, Mascher M:
Avena sativa cv. Delfin genome assembly. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB56707 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB56707
PanOat, Mascher M:
Avena sativa cv. Victoria genome assembly. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB56706 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB56706
PanOat, Mascher M:
Avena sativa OT380 genome assembly. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB56705 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB56705
PanOat, Mascher M:
Avena sativa cv. Amagalon genome assembly. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB56704 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB56704
PanOat, Mascher M:
Avena sativa FM13 genome assembly. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB56703 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB56703
PanOat, Mascher M:
Avena sativa cv. Rhapsody genome assembly. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB56702 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB56702
PanOat, Mascher M:
Avena sativa cv. Lion genome assembly. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB56701 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB56701
PanOat, Mascher M:
Avena sativa cv. Bingo genome assembly. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB56700 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB56700
PanOat, Mascher M:
Avena abyssinica BYU960 genome assembly. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB56724 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB56724
PanOat, Mascher M:
Avena barbata accession PI388828 genome assembly. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB56723 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB56723
PanOat, Mascher M:
Avena sterilis TN4 genome assembly. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB56722 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB56722
PanOat, Mascher M:
Avena sativa cv. HiFi genome assembly. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB56721 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB56721
PanOat, Mascher M:
Avena sativa cv. Gehl genome assembly. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB56720 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB56720
PanOat, Mascher M:
Avena sativa cv. GS7 genome assembly. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB56719 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB56719
PanOat, Mascher M:
Avena sativa cv. Clintland60 genome assembly. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB56718 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB56718
PanOat, Mascher M:
Avena sativa cv. Aslak genome assembly. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB56717 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB56717
PanOat, Mascher M:
Avena sterilis TN1 genome assembly. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB56716 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB56716
PanOat, Mascher M:
Avena sativa accession PI182478 genome assembly. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB56715 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB56715
PanOat, Mascher M:
Avena sativa cv. Park genome assembly. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB56714 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB56714
PanOat, Mascher M:
Avena fatua CN25955 genome assembly. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB56713 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB56713
PanOat, Mascher M:
Avena sativa cv. Bannister genome assembly. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB56712 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB56712
PanOat, Mascher M:
Avena sativa GMI423 genome assembly. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB56711 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB56711
PanOat, Mascher M:
Avena sativa cv. Hatives des Alpes genome assembly. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB56710 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB56710
PanOat, Mascher M:
Avena sativa cv. Bilby genome assembly. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB56709 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB56709
PanOat, Mascher M:
Avena sativa cv. Nicolas genome assembly. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB56708 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB56708
PanOat, Mascher M:
PanOat project: Raw data. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB56828 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB56828
PanOat, Mascher M:
Transcriptome data of diverse oats (Avena spp.). European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB57570 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB57570
PanOat, Mascher M:
PanOat:WGS Resequencing. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB62778 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB62778
Phillips J, Magos Brehm J, Adam-Blondon A-F, Avagyan A, Fresta L, Forycka A, Gailïte A, Gay L, Iriondo J M, Labokas J, Palmé A, Raggi L, Thormann I, Weise S, Zdunic G, Maxted N:
Plant Genetic Resource consolidated in situ descriptors. Harvard Dataverse (2025) https://doi.org/10.7910/DVN/V6RLCO
Psaroudakis D, D'Auria J:
Time-resolved multi-omics analysis of heat stress response in tomato plants. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB85881 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB85881
Psaroudakis D, Neumann K, Rolletschek H, Borisjuk L, Szymanski J:
Time-resolved multi-omics analysis of heat stress response in moneymaker tomato plants. e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben (2025) https://dx.doi.org/10.5447/IPK/2025/3
Rönspies M, Khosravi S, Helia O, Valisi A, Fajkus J, Fojtová M, Houben A, Puchta H:
CRISPR-Cas-mediated heritable chromosome fusions in Arabidopsis. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB89813 (2025) https://www.ebi.ac.uk/ena/data/view/PRJEB89813
Sarala G P, Hajirezaei M R:
Transcriptional changes in Hydrangea varieties with varying levels of the natural sweetener phyllodulcin. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB79406 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB79406
Shi R, Lopez-Malvar A, Knoch D, Heuermann M C, Tschiersch H, Shaaf S, Altmann T:
High-throughput shoot phenotyping of maize under combined drought and heat stress. e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben (2025) https://dx.doi.org/10.5447/IPK/2025/8
Wichmann P, Maurer A, Hakan O, Schulman A, Shaaf S, Neumann K, Verma R P S, Sanchez-Garcia M, Baum M, Pillen K:
BRACE dataset on phenotype and environmental data of multi-environment field trials with the HEB-400 NAM population of barley. e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben (2025) https://dx.doi.org/10.5447/IPK/2025/6
Yuan Z, El Hanafi S, Oldach K, Jahoor A, Jensen J D, Bruns M, Dohrendorf V-E, Stein N, Reif J:
Diseases resistance of 300 barley plant genetic resources across four environments. e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben (2025) https://dx.doi.org/10.5447/IPK/2025/9
Zhang H, Jayakodi M:
Genotyping-by-sequencing (GBS) of faba bean plant. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB75354 (2025) https://www.ebi.ac.uk/ena/browser/view/PRJEB75354
Zhu Z, Kuo Y-T, Himmelbach A, Stein N, Houben A:
ATAC-seq of Chamaelirium luteum to determine the accessible chromatin regions. NCBI GEO under accession number GSE285102 (2025) https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE285102
Antonielli L, Großkinsky D, Koch H, Trognitz F, Sanchez Mejia A, Nagel M:
BacFlux: A workflow for bacterial short reads assembly, QC, annotation, and more. Zenodo (2024) https://zenodo.org/records/11143918
Avni R, Mascher M:
Aegilops longissima - long read genome assembly. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB58051 (2024) https://www.ebi.ac.uk/ena/browser/view/PRJEB58051
Avni R, Mascher M:
A single NLR gene confers resistance to both leaf and stripe rust in wheat (RNA-Seq). European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB64238 (2024) https://www.ebi.ac.uk/ena/browser/view/PRJEB64238
Avni R, Mascher M:
A single NLR gene confers resistance to both leaf and stripe rust in wheat (RenSeq). European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB64239 (2024) https://www.ebi.ac.uk/ena/browser/view/PRJEB64239
Blattner F:
GBS datasets of western Eurasian lime trees (Tilia) and the Hyrcanian Forest taxa. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB80134 (2024) https://www.ebi.ac.uk/ena/browser/view/PRJEB80134
Blattner F:
Genotyping by sequencing of the barley wild relative Hordeum bulbosum. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB73823 (2024) https://www.ebi.ac.uk/ena/browser/view/PRJEB73823
Chen J, Tulpová Z, Šimková H, Macas J, Schmutzer T, Himmelbach A, Houben A:
The rye B chromosome drive:WGS. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB69479 (2024) https://www.ebi.ac.uk/ena/data/view/PRJEB69479
Chen Y, Kölliker R, Mascher M, Copetti D, Himmelbach A, Stein N, Studer B:
Supporting data for An improved chromosome-level genome assembly of perennial ryegrass (Lolium perenne L.)"." GigaScience Database (2024) https://dx.doi.org/10.5524/102500
Cho W, Mascher M:
Genome assemblies of a diploid chamomile (Matricaria recutita) genotype. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB64706 (2024) https://www.ebi.ac.uk/ena/browser/view/PRJEB64706
Cho W, Otto L G, Mascher M:
An annotated haplotype-resolved genome sequence assembly of diploid German chamomile, Matricaria chamomilla. NCBI GenBank under accession number PRJNA1147238 (2024) https://www.ncbi.nlm.nih.gov/bioproject/1147238
Feng C, Lorenz J, Dreissig S, Schubert V, Wang B, Hartmann F, Cuacos M, Fernández-Jiménez N, Câmara A, Himmelbach A, Heckmann S:
The novel synaptonemal complex central element SCEP3 interlinks synapsis initiation and crossover formation in Arabidopsis thaliana. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB81799 (2024) https://www.ebi.ac.uk/ena/data/view/PRJEB81799
Frohn S, Schippers J H M:
Evolutionary conserved and divergent responses to copper zinc superoxide dismutase inhibition in plants. DataPLANT at NFDI (2024) https://doi.org/10.60534/y2eyy-bg094
Guo Y, Mascher M:
Single-nucleotide polymorphism matrices for 281 wild barleys (Hordeum vulgare) subsp. spontaneum from the Wild Barley Diversity Collection (WBDC). European Variation Archive (EVA) at EMBL-EBI under accession number PRJEB80165 (2024) https://www.ebi.ac.uk/ena/browser/view/PRJEB80165
Hajirezaei M R:
Elucidating the systemic response of wheat plants under waterlogging based on transcriptomic and metabolic approaches. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB74346 (2024) https://www.ebi.ac.uk/ena/data/view/PRJEB74346
Haupt M:
Major chromosome rearrangements in intergeneric wheat x rye hybrids in compatible and incompatible crosses detected by GBS read coverage analysis. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB64645 (2024) https://www.ebi.ac.uk/ena/data/view/PRJEB64645
Haupt M, Tikhenko N, Mascher M:
Major chromosome rearrangements in intergeneric wheat x rye hybrids in compatible and incompatible crosses detected by GBS read coverage analysis. e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben (2024) https://dx.doi.org/10.5447/IPK/2024/4
Heuermann M C, Meyer R C, Knoch D, Tschiersch H, Altmann T:
High-throughput phenotyping of an Arabidopsis thaliana accession panel exposed to fluctuating light treatment EXP1. e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben (2024) https://dx.doi.org/10.5447/IPK/2024/1
Heuermann M C, Meyer R C, Knoch D, Tschiersch H, Altmann T:
High-throughput phenotyping of an Arabidopsis thaliana accession panel exposed to fluctuating light treatment EXP3. e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben (2024) https://dx.doi.org/10.5447/IPK/2024/3
Heuermann M C, Meyer R C, Knoch D, Tschiersch H, Altmann T:
High-throughput phenotyping of an Arabidopsis thaliana accession panel exposed to fluctuating light treatment EXP2. e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben (2024) https://dx.doi.org/10.5447/IPK/2024/2
Huang Y:
Dynamic phytomeric growth contributes to local adaptation in barley. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB61463 (2024) https://www.ebi.ac.uk/ena/data/view/PRJEB61463
Jayakodi M, Mascher M:
SNP matrix of barley core set from german ex-situ genbank IPK selected for BPGv2 project. European Variation Archive (EVA) at EMBL-EBI under accession number PRJEB70778 (2024) https://www.ebi.ac.uk/ena/browser/view/PRJEB70778
Kamal R:
Insights into the genetic basis of pre-anthesis tip degeneration and related traits in barley. European Variation Archive (EVA) at EMBL-EBI under accession number PRJEB75980 (2024) https://www.ebi.ac.uk/eva/?eva-study=PRJEB75980
Kamal R, Huang Y:
Insights into the genetic basis of pre-anthesis tip degeneration and related traits in barley. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB78511 (2024) https://www.ebi.ac.uk/ena/browser/view/PRJEB78511
Khosravi S:
Epigenetic state and gene expression remain stable after CRISPR/Cas-mediated chromosomal inversions. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB81173 (2024) https://www.ebi.ac.uk/ena/browser/view/PRJEB81173
Koch D, Psaroudakis D, Weder J-N:
NAMlab/PlantEd: PlantEd (v1.0.0). Zenodo (2024) https://doi.org/10.5281/zenodo.10978202
Lueck S:
Example datasets for testing the GWASTic software. Zenodo (2024) https://doi.org/10.5281/zenodo.11183758
Mascher M:
WBDC-WGS. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB56087 (2024) https://www.ebi.ac.uk/ena/browser/view/PRJEB56087
Mascher M:
A pangenome of the barley wild relative Hordeum bulbosum. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB65276 (2024) https://www.ebi.ac.uk/ena/browser/view/PRJEB65276
Mascher M:
Single pollen nuclei sequencing data of Hordeum bulbosum clone FB19-011-3. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB65918 (2024) https://www.ebi.ac.uk/ena/browser/view/PRJEB65918
Narisetti N, Gladilin E:
Semi-automated Root Image Analysis (saRIA) (v0.1). Zenodo (2024) https://doi.org/10.5281/zenodo.13644418
Narisetti N, Gladilin E:
Fully automated Root Image Analysis (faRIA) (v0.1). Zenodo (2024) https://doi.org/10.5281/zenodo.13644751
Oppermann M:
IPK genebank accessions passport data snapshot 2024-05-22. e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben (2024) https://dx.doi.org/10.5447/ipk/2024/5
Oppermann M:
IPK genebank accessions passport data snapshot 2024-05-15. e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben (2024) https://dx.doi.org/10.5447/ipk/2024/0
Oppermann M:
IPK genebank accessions passport data snapshot 2024-08-19. e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben (2024) https://dx.doi.org/10.5447/ipk/2024/8
Oppermann M:
IPK genebank accessions passport data snapshot 2024-12-02. e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben (2024) https://dx.doi.org/10.5447/ipk/2024/12
Peleke F F:
NAMlab/DeepCRE: Initial Release (0.1.0). Zenodo (2024) https://doi.org/10.5281/zenodo.10822014
Stein N:
SHAPE II WGS raw data. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB53924 (2024) https://www.ebi.ac.uk/ena/data/view/PRJEB53924
Stein N, Mascher M:
BPGv2: HiFi and Hi-C raw data. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB57567 (2024) https://www.ebi.ac.uk/ena/data/view/PRJEB57567
Svoboda P, Holubec V, Reif J, Berkner M O:
Historical phenotypic data of spring and winter wheat accessions regenerated in Czech genebank in Prague-Ruzyne since the 1950s. e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben (2024) https://dx.doi.org/10.5447/IPK/2024/6
Szymanski J:
Mechanical forces orchestrate the metabolism of the developing oilseed rape embryo. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB77373 (2024) https://www.ebi.ac.uk/ena/data/view/PRJEB77373
Wallace T, Stein N:
G2P-SOL project: Capsicum accessions diversity panel. European Variation Archive (EVA) at EMBL-EBI under accession number PRJEB62681 (2024) https://www.ebi.ac.uk/eva/?eva-study=PRJEB62681
Yuan Z:
Single-nucleotide polymorphism matrices for 812 plant genetic resources and 298 European elite materials of barley. European Variation Archive (EVA) at EMBL-EBI under accession number PRJEB80159 (2024) https://www.ebi.ac.uk/ena/browser/view/PRJEB80159
Bienert P:
Identification of boron deficiency responsive genes in Brassica napus inflorescences. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB48627 (2023) https://www.ebi.ac.uk/ena/data/view/PRJEB48627
Böhnert T, Harpke D:
Historical biogeography of the Atacama plant genus Cristaria. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB48173 (2023) https://www.ebi.ac.uk/ena/browser/view/PRJEB48173
Câmara* A, Schubert* V:
Helical organization of barley metaphase chromatids. e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben (2023) https://dx.doi.org/10.5447/IPK/2023/2
El Hanafi S, Reif J:
Genotyping-by-sequencing data of 2299 barley accessions of the ICARDA genebank. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB60449 (2023) https://www.ebi.ac.uk/ena/data/view/PRJEB60449
El Hanafi* S, Jiang* Y, Reif* J, Kehel Z, Schulthess Börgel A W, Zhao Y, Mascher M, Haupt M, Himmelbach A, Stein N, Amri A:
Genome-wide prediction of thousand kernel weight for 234 winter barley accessions from the ICARDA genebank using 1,910 IPK genebank accessions as training set. e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben (2023) https://dx.doi.org/10.5447/IPK/2023/8
Giehl R F H, Hartmann A, von Wirén N:
Expression signatures of Arabidopsis thaliana roots under low or high phosphate conditions. NCBI GEO under accession number GSE217790 (2023) https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE217790
Harpke D:
Disentangling a polyploid complex within Crocus series Verni. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB57934 (2023) https://www.ebi.ac.uk/ena/browser/view/PRJEB57934
Harpke D, Raca I, Blattner F, Waminal N, Kerndorff H, Randjelovic V:
De-novo assembled genotyping-by-sequencing (GBS) datasets for Crocus series Verni species. e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben (2023) https://dx.doi.org/10.5447/IPK/2023/5
Hartmann A:
HYP1-dependent changes in the root transcriptome of Arabidopsis thaliana in response to phosphorus deficiency. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB65916 (2023) https://www.ebi.ac.uk/ena/data/view/PRJEB65916
Heckmann S:
LC-MSMS of Arabidopsis thaliana flower bud samples (TurboID-based proximity labeling of meiotic chromosome axes). ProteomeXchange Consortium via the PRIDE partner repository under accession number PXD034241 (2023) https://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD034241
Hinterberger V, Douchkov D, Lueck S, Reif J, Schulthess Börgel A W:
Powdery mildew resistance phenotyping of the winter wheat collection of the German Federal ex situ Genebank for Agricultural and Horticultural Crops at IPK Gatersleben. e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben (2023) https://dx.doi.org/10.5447/IPK/2023/0
Hinterberger V, Douchkov D, Lueck S, Reif J, Schulthess Börgel A W:
Powdery mildew resistance phenotyping of the Winter Wheat collection of the German Federal ex situ Genebank for Agricultural and Horticultural Crops at IPK Gatersleben. e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben (2023) https://dx.doi.org/10.5447/IPK/2023/1
Hinterberger V, Douchkov D, Lueck S, Reif J, Schulthess Börgel A W:
High throughput phenotyping of seedling quantitative resistance against powdery mildew of the Winter Wheat collection of the German Federal ex situ Genebank for Agricultural and Horticultural Crops at IPK Gatersleben. e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben (2023) https://dx.doi.org/10.5447/IPK/2023/3
Jayakodi M:
Vicia faba cv. Hedin3 enzymatic methylation sequencing. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB55371 (2023) https://www.ebi.ac.uk/ena/data/view/PRJEB55371
Jozefowicz A M, Wellpott K, Bündig C, Winkelmann T, Mock H-P:
Identification of proteins taking part in N and water deficiency response in potato. e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben (2023) https://dx.doi.org/10.5447/IPK/2023/4
Kale S M, Mascher M:
Raw sequence data of 47 diverse barley (Hordeum vulgare L.) genotypes. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB45512 (2023) https://www.ebi.ac.uk/ena/data/view/PRJEB45512
Khodaeiaminjan M, Knoch D:
Identification of new QTLs for drought tolerance and root development in two-raw spring barley landraces. European Variation Archive (EVA) at EMBL-EBI under accession number PRJEB59438 (2023) https://www.ebi.ac.uk/eva/?eva-study=PRJEB59438
Knoch D:
PREDICT: Omics-based models for prediction of hybrid performance in oilseed rape. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB63226 (2023) https://www.ebi.ac.uk/ena/browser/view/PRJEB63226
Knoch D:
Genotyping of the PREDICT canola population by the Brassica 60K Illumina Infinium™ SNP genotyping array. ArrayExpress at EMBL-EBI under accession number E-MTAB-13142 (2023) https://www.ebi.ac.uk/biostudies/arrayexpress/studies/E-MTAB-13142?query=E-MTAB-13142
Knoch D, Meyer R C, Heuermann M C, Arend D, Altmann T:
Phenotyping dataset of the PREDICT canola population. e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben (2023) https://dx.doi.org/10.5447/ipk/2023/19
Knoch D, Meyer R C, Heuermann M C, Riewe D, Peleke F F, Szymanski J, Abbadi A, Snowdon R J, Altmann T:
PREDICT: untargeted metabolomic profiling in a Brassica napus (canola) breeding population by GC-MS. MetaboLights at EMBL-EBI under accession number MTBLS8056 (2023) https://www.ebi.ac.uk/metabolights/editor/MTBLS8056/descriptors
Kuo Y-T, Houben A:
RNA-Seq Analyses of Chionographis japonica. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB58123 (2023) https://www.ebi.ac.uk/ena/data/view/PRJEB58123
Kuo Y-T, Houben A:
Genome sequencing of Chionographis japonica. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB58129 (2023) https://www.ebi.ac.uk/ena/data/view/PRJEB58129
Kuo Y-T, Houben A:
Whole genome shotgun sequences of Chionographis japonica. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB58128 (2023) https://www.ebi.ac.uk/ena/data/view/PRJEB58128
Kuo Y-T, Houben A:
Enzymatic Methyl-Seq of Chionographis japonica. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB58127 (2023) https://www.ebi.ac.uk/ena/data/view/PRJEB58127
Kuo Y-T, Houben A:
Long-read PacBio Sequencing of Chionographis japonica. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB58125 (2023) https://www.ebi.ac.uk/ena/data/view/PRJEB58125
Kuo Y-T, Houben A:
Chromosome Conformation Capture (Hi-C) sequencing of Chionographis japonica. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB58124 (2023) https://www.ebi.ac.uk/ena/data/view/PRJEB58124
Kuo Y-T, Houben A:
Large-scale genome architecture and chromatin composition of holocentromeric plant Chionographis japonica. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB58432 (2023) https://www.ebi.ac.uk/ena/data/view/PRJEB58432
Kuo Y-T, Houben A:
CENH3-ChIPSeq, H3K4me2-ChIPSeq and H3K9me2-ChIPSeq of Chionographis japonica. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB58126 (2023) https://www.ebi.ac.uk/ena/data/view/PRJEB58126
Langer M, Hilo A, Guan J-C, Koch K E, Xiao H, Verboven P, Gündel A, Wagner S, Ortleb S, Radchuk V, Mayer S, Nicolai B, Borisjuk L, Rolletschek H:
RNA-seq raw data sets of the developing maize kernel. NCBI GenBank under accession number PRJNA823922 (2023) https://www.ncbi.nlm.nih.gov/bioproject/PRJNA823922
Lermontova I:
SHAPE High temperature increases haploid induction efficiency. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB58839 (2023) https://www.ebi.ac.uk/ena/browser/view/PRJEB58839
Narisetti N, Awais M, Khan M, Stolzenburg F, Stein N, Gladilin E:
AWN phenotyping tool- v0.1. e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben (2023) https://dx.doi.org/10.5447/ipk/2023/13
Oppermann M:
IPK genebank accessions passport data snapshot 2023-02-17. e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben (2023) https://dx.doi.org/10.5447/IPK/2023/6
Oppermann M:
IPK genebank accessions passport data snapshot 2023-05-15. e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben (2023) https://dx.doi.org/10.5447/IPK/2023/10
Oppermann M:
IPK genebank accessions passport data snapshot 2023-08-22. e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben (2023) https://dx.doi.org/10.5447/IPK/2023/16
Oppermann M:
IPK genebank accessions passport data snapshot 2023-11-20. e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben (2023) https://dx.doi.org/10.5447/IPK/2023/21
Radchuk V, Szymanski J:
The RNAseq data of the developing barley grains of HvSWEET11b repressed lines vs control. NCBI GenBank under accession number PRJNA852376 (2023) https://www.ncbi.nlm.nih.gov/bioproject/PRJNA852376
Schippers J H M:
Target gene identification of ANAC013 during hypoxia in Arabidopsis. NCBI SRA under accession number PRJEB52547 (2023) https://www.ncbi.nlm.nih.gov/bioproject/PRJEB52547
Schreiber M, Wonneberger R, Haaning A, Russell J, Himmelbach A, Fiebig A, Muehlbauer G J, Waugh R, Stein N:
Data record for the genomic resources of cultivated European two-rowed spring barley genotypes. e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben (2023) https://dx.doi.org/10.5447/ipk/2023/15
Stepanenko A, Chen G, Borisjuk N:
Spirodela polyrhiza 5S ribosomal RNA gene region. NCBI GenBank under accession number OR841168-OR841270 (2023) https://www.ncbi.nlm.nih.gov/nuccore/OR841168.1
von Wirén N, Giehl R F H, Hartmann A:
Gene expression signatures in Arabidopsis thaliana roots under sufficient nitrogen or mild nitrogen deficiency. NCBI GEO under accession number GSE216293 (2023) https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE216293
Weise S, Hoekstra R, Kutschan K J, Oppermann M, van Treuren R, Lohwasser U:
Analysis of gaps in rapeseed (Brassica napus L.) collections in European genebanks – supplementary data. Zenodo (2023) https://zenodo.org/records/8081795
Avni R, Mascher M:
Chromosome-scale sequence assembly of the genome of bread wheat (Triticum aestivum) cultivar Attraktion. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB48529 (2022) https://www.ebi.ac.uk/ena/data/view/PRJEB48529
Avni R, Mascher M:
10X Genomics Chromium reads for Aegilops speltoides var. speltoides accession Tivon. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB48314 (2022) https://www.ebi.ac.uk/ena/data/view/PRJEB48314
Beier S, Mascher M:
BRIDGE-MorexV3: SNP matrix of barley collection from german ex-situ genbank IPK. European Variation Archive (EVA) at EMBL-EBI under accession number PRJEB51851 (2022) https://www.ebi.ac.uk/eva/?eva-study=PRJEB51851
Berkner M O, Schulthess A W, Zhao Y, Jiang Y, Oppermann M, Reif J:
Comparison of ten genomic prediction approaches in a diverse collection of plant genetic resources in wheat. e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben (2022) https://dx.doi.org/10.5447/IPK/2022/11
D'Auria J:
cDNA sequences of Erythroxylum coca tropane alkaloid metabolism. NCBI GenBank under accession number OP382839-OP382848 (2022) https://www.ncbi.nlm.nih.gov/nuccore/OP382839
Demidov D:
CENH3 degradation based haploidization in Arabidopsis thaliana. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB51342 (2022) https://www.ebi.ac.uk/ena/data/view/PRJEB51342
Gippert* A-L, Mock* H-P, Madritsch S, Woryna P, Otte S, Mayrhofer M, Eigner H, Garibay-Hernández A, Molin E M, D'Auria J:
Unraveling metabolic patterns and molecular mechanisms underlying storability in sugar beet. e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben (2022) https://dx.doi.org/10.5447/IPK/2022/14
Gogna A, Schulthess Börgel A W, Röder M, Ganal M, Reif J:
The phenotypic data of elite European cultivar panel comprising 358 winter and 14 summer wheat varieties released from 1975 to 2007. e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben (2022) https://dx.doi.org/10.5447/IPK/2022/18
Guo Y, Mascher M:
Variant matrices for six-rowed wild-growing barleys (Hordeum agriocrithon). e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben (2022) https://dx.doi.org/10.5447/IPK/2022/10
Guo Y, Mascher M:
Wild Barley H. agriocrition GBS, WGS3x, WGS10x. European Variation Archive (EVA) at EMBL-EBI under accession number PRJEB53985 (2022) https://www.ebi.ac.uk/eva/?eva-study=PRJEB53985
Haghi R, Karami-Moalem S:
RNA-Seq of spineless Iranian safflower. NCBI SRA under accession number PRJNA833048 (2022) https://www.ncbi.nlm.nih.gov/bioproject/PRJNA833048
Hartmann A:
Transcriptome changes in barley plants in response to potassium deficiency and silicon supply. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB51840 (2022) https://www.ebi.ac.uk/ena/data/view/PRJEB51840
Heuermann D, Döll S, Gentsch N, Schweneker D, Feuerstein U, von Wirén N:
Metabolite profile in root exudates of catch crops under different cultivation conditions. e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben (2022) https://dx.doi.org/10.5447/IPK/2022/19
Houben A:
ChIP-seq data for centromeric histone variant CENH3 in Hordeum vulgare cv. Morex. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB48698 (2022) https://www.ebi.ac.uk/ena/data/view/PRJEB48698
Huang Y:
BW-NIL-tst2.b and Donaria WGS raw data. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB51368 (2022) https://www.ebi.ac.uk/ena/data/view/PRJEB51368
Huang Y:
Barley spikelet abortion transcriptome. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB51366 (2022) https://www.ebi.ac.uk/ena/data/view/PRJEB51366
Huang Y, Schnurbusch T, Mascher M:
Diversity of panel of wild and domesticated barley (Hordeum vulgare) and crop-wild hybrids. European Variation Archive (EVA) at EMBL-EBI under accession number PRJEB62782 (2022) https://www.ebi.ac.uk/eva/?eva-study=PRJEB62782
Kale S M:
Genebank 2.0 - Resistance gene capture in winter wheat diversity panel. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB48219 (2022) https://www.ebi.ac.uk/ena/data/view/PRJEB48219
Kale S M, Mascher M:
Genebank 2.0: Resistance gene capture in winter wheat diversity panels. European Variation Archive (EVA) at EMBL-EBI under accession number PRJEB52597 (2022) https://www.ebi.ac.uk/eva/?eva-study=PRJEB52597
Kuo Y-T, Houben A:
ChIP-seq of holocentric Chionographis japonica to determine the centromere distribution and genome organization. NCBI GEO under accession number GSE228407 (2022) https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE228407
Leo J, Brassac J:
Diversity of Elymus mutabilis. NCBI SRA under accession number PRJNA770613 (2022) https://www.ncbi.nlm.nih.gov/bioproject/PRJNA770613
Lueck S:
Training course material for the course de.NBI Biology meets Programming - Introduction to Bioinformatics using Python"." e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben (2022) https://dx.doi.org/10.5447/IPK/2022/17
Lueck S, Douchkov D:
Classified microscopy image data set of powdery mildew-infected barley leaves at 48hai, containing positive images with fungal microcolonies and negative examples. e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben (2022) https://dx.doi.org/10.5447/IPK/2022/1
Mascher M:
Filtration script for genetic variant matrices in Variant Call Format (VCF). e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben (2022) https://dx.doi.org/10.5447/IPK/2022/15
Mascher M:
Genotyping-by-sequencing data of the Wild Barley Diversity Collection. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB51697 (2022) https://www.ebi.ac.uk/ena/data/view/PRJEB51697
Mascher M:
Six-rowed wild-growing barley GBS. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB51488 (2022) https://www.ebi.ac.uk/ena/data/view/PRJEB51488
Mascher M:
Six-rowed wild-growing barley WGS. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB51487 (2022) https://www.ebi.ac.uk/ena/data/view/PRJEB51487
Mascher M:
Genotyping-by-sequencing data of a rye (Secale spp.) diversity panel. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB50548 (2022) https://www.ebi.ac.uk/ena/data/view/PRJEB50548
Mascher M:
Recombination landscape divergence between populations is marked by larger low-recombining regions in domesticated rye. European Variation Archive (EVA) at EMBL-EBI under accession number PRJEB51528 (2022) https://www.ebi.ac.uk/eva/?eva-study=PRJEB51528
Mascher M:
Whole-genome re-sequencing of barley cultivar Chikurin Ibaraki 1. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB50079 (2022) https://www.ebi.ac.uk/ena/data/view/PRJEB50079
Mascher M, Marone M:
TRITEX pipeline source code and documentation. e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben (2022) https://dx.doi.org/10.5447/IPK/2022/28
Matthes F, Worch S, Meier A, Hartmann A, Kunze G:
Influence of gallic acid on gene expression in Blastobotrys raffinosifermentans LS3. NCBI GEO under accession number GSE195801 (2022) https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE195801
Matthes F, Worch S, Meier A, Hartmann A, Kunze G:
Influence of protocatechuic acid on gene expression in Blastobotrys raffinosifermentans LS3. NCBI GEO under accession number GSE195808 (2022) https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE195808
Nemati Z, Haghi R, Blattner F:
Phylogenomic investigation of safflower (Carthamus tinctorius). NCBI SRA under accession number PRJNA865057 (2022) https://www.ncbi.nlm.nih.gov/bioproject/PRJNA865057
Oppermann M:
IPK genebank accessions passport data snapshot 2022-05-22. e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben (2022) https://dx.doi.org/10.5447/IPK/2022/8
Oppermann M:
IPK genebank accessions passport data snapshot 2022-04-27. e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben (2022) https://dx.doi.org/10.5447/IPK/2022/7
Oppermann M:
IPK genebank accessions passport data snapshot 2022-11-16. e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben (2022) https://dx.doi.org/10.5447/IPK/2022/30
Oppermann M:
IPK genebank accessions passport data snapshot 2022-08-17. e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben (2022) https://dx.doi.org/10.5447/IPK/2022/16
Püpke Marone M, Mascher M:
Example files generated in the TRITEX long-read assembly pipeline. e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben (2022) https://dx.doi.org/10.5447/IPK/2022/20
Reif J:
Genebank 2.0 - WGS. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB48738 (2022) https://www.ebi.ac.uk/ena/data/view/PRJEB48738
Schulthess A, Mascher M:
Single-nucleotide polymorphism matrices for a large diversity panel of wheat (Triticum aestivum L.). European Variation Archive (EVA) at EMBL-EBI under accession number PRJEB52759 (2022) https://www.ebi.ac.uk/eva/?eva-study=PRJEB52759
Schulthess A W, Kale S M, Liu F, Zhao Y, Philipp N, Rembe M, Jiang Y, Beukert U, Serfling A, Himmelbach A, Fuchs J, Oppermann M, Weise S, Boeven P H G, Schacht J, Longin C F H, Kollers S, Pfeiffer N, Korzun V, Lange M, Scholz U, Stein N, Mascher M, Reif J C:
Genome-wide association mapping for yellow rust resistance in a population of 454 whole-genome sequenced diverse wheat genotypes. e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben (2022) https://dx.doi.org/10.5447/ipk/2022/5
Schulthess A W, Kale S M, Liu F, Zhao Y, Philipp N, Rembe M, Jiang Y, Beukert U, Serfling A, Himmelbach A, Fuchs J, Oppermann M, Weise S, Boeven P H G, Schacht J, Longin C F H, Kollers S, Pfeiffer N, Korzun V, Lange M, Scholz U, Stein N, Mascher M, Reif J C:
Genomic prediction of yield breeding values for 10,353 winter wheat genebank samples. e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben (2022) https://dx.doi.org/10.5447/ipk/2022/6
Schulthess A W, Kale S M, Zhao Y, Gogna A, Rembe M, Philipp N, Liu F, Beukert U, Serfling A, Himmelbach A, Oppermann M, Weise S, Boeven P H G, Schacht J, Longin C F H, Kollers S, Pfeiffer N, Korzun V, Fiebig A, Schüler D, Lange M, Scholz U, Stein N, Mascher M, Reif J C:
Genomic-phenotypic data interoperability between 8,838 genotyped wheat samples, grain yield breeding value estimates and yellow rust infection scores from multiple-environment field trials. e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben (2022) https://dx.doi.org/10.5447/IPK/2022/21
Schulthess A W, Kale S M, Zhao Y, Gogna A, Rembe M, Philipp N, Liu F, Beukert U, Serfling A, Himmelbach A, Oppermann M, Weise S, Boeven P H G, Schacht J, Longin C F H, Kollers S, Pfeiffer N, Korzun V, Fiebig A, Schüler D, Lange M, Scholz U, Stein N, Mascher M, Reif J C:
Evaluating the yellow rust resistance of 7,682 winter wheat IPK genebank accessions and 80 modern European cultivars based on natural infections in multiple-environments. e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben (2022) https://dx.doi.org/10.5447/IPK/2022/22
Schulthess A W, Kale S M, Zhao Y, Gogna A, Rembe M, Philipp N, Liu F, Beukert U, Serfling A, Himmelbach A, Oppermann M, Weise S, Boeven P H G, Schacht J, Longin C F H, Kollers S, Pfeiffer N, Korzun V, Fiebig A, Schüler D, Lange M, Scholz U, Stein N, Mascher M, Reif J C:
Evaluating the yellow rust resistance of 600 winter wheat IPK genebank accession samples and 199 modern European cultivars based on natural and artificial inoculations in multiple-environments. e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben (2022) https://dx.doi.org/10.5447/IPK/2022/23
Schulthess A W, Kale S M, Zhao Y, Gogna A, Rembe M, Philipp N, Liu F, Beukert U, Serfling A, Himmelbach A, Oppermann M, Weise S, Boeven P H G, Schacht J, Longin C F H, Kollers S, Pfeiffer N, Korzun V, Fiebig A, Schüler D, Lange M, Scholz U, Stein N, Mascher M, Reif J C:
Multiple-environment yield evaluation of 173 advanced wheat pre-breeding lines from crosses involving IPK genebank accessions with high yield breeding values. e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben (2022) https://dx.doi.org/10.5447/IPK/2022/24
Schulthess A W, Kale S M, Zhao Y, Gogna A, Rembe M, Philipp N, Liu F, Beukert U, Serfling A, Himmelbach A, Oppermann M, Weise S, Boeven P H G, Schacht J, Longin C F H, Kollers S, Pfeiffer N, Korzun V, Fiebig A, Schüler D, Lange M, Scholz U, Stein N, Mascher M, Reif J C:
Passport information for 8,838 genotyped wheat samples. e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben (2022) https://dx.doi.org/10.5447/ipk/2022/31
Schulthess A W, Mascher M:
Genebank 2.0 - GENDIV. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB48988 (2022) https://www.ebi.ac.uk/ena/data/view/PRJEB48988
Shaaf S, Kilian B:
Hordeum blooming loci TSL. NCBI GenBank under accession number PRJNA957109 (2022) https://www.ncbi.nlm.nih.gov/bioproject/PRJNA957109
Shanmugaraj N:
Barley apical spikelet abortion transcriptome. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB51523 (2022) https://www.ebi.ac.uk/ena/data/view/PRJEB51523
Stein N:
SHAPE Isoseq. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB55218 (2022) https://www.ebi.ac.uk/ena/data/view/PRJEB55218
Tremetsberger K, Pfanzelt S, Blattner F:
Phylogenetic and biogeographic analysis of the steppe plant Adonis vernalis. European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB51092 (2022) https://www.ebi.ac.uk/ena/browser/view/PRJEB51092
Zhao Y, Schulthess A W, Kale S M, Gogna A, Rembe M, Philipp N, Liu F, Beukert U, Serfling A, Himmelbach A, Oppermann M, Weise S, Boeven P H G, Schacht J, Longin C F H, Kollers S, Pfeiffer N, Korzun V, Fiebig A, Schüler D, Lange M, Scholz U, Stein N, Mascher M, Reif J C:
Estimating the breeding values of 707 winter wheat IPK genebank accessions using yields of 'Elite×PGR' F1 hybrids tested across multiple-environment experiments. e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben (2022) https://dx.doi.org/10.5447/IPK/2022/25
Zheng S, Rogachev I, Szymanski J, Shahaf N, Malitsky S, Meir S, Wang X, Aharoni A:
Metabolic diversity in a collection of wild and cultivated Brassica rapa subspecies. e!DAL - Plant Genomics and Phenomics Research Data Repository (PGP), IPK Gatersleben (2022) https://dx.doi.org/10.5447/IPK/2022/27