Genomdiversität

Research Interest

© Leibniz Institut (IPK)
Fig. 1: Geographic origin and population structure of a mapping population consisting of 2rowed (a) and 6rowed (b) barley landraces (Pasam et al. 2014).

Head: Prof. Andreas Graner

Our ability to leverage the genetic diversity maintained in ex situ collections is strongly dependent on the knowledge about genes that underlie the expression of phenotypic traits. Therefore, the overriding goal of the research group is the development of biological resources, molecular tools and strategies facilitating an improved conservation  utilization of plant genetic resources. Research activities focus mainly on barley (Hordeum vulgare),  wheat  (Triticum aestivum) and Bean (Phaseolus vulgaris). DNA marker analysis and sequencing  are being employed for the quantification of genetic variability and its relation to phenotypic variability. The corresponding data are being used for the development of core collections and populations to be used for association mapping (Fig. 1, 2). Moreover, fingerprinting data are evaluated to assess the genetic integrity of genebank accessions to develop a DNA marker based quality management of selected collections. Our research follows two main threads, improvement of the collection management and genetics of biomass accumulation, both of which contribute to IPK research theme Strategies for the Valorization of Genetic Resources.

Scientists of the research group are teaching at the Institute of Agricultural Sciences at Martin Luther University Halle-Wittenberg.

© Leibniz Institut (IPK)
Fig 2: Genome wide association scans for traits heading date (9a), plant height (9b), thousand grain weight (9c) using 918 SNPs (Pasam et al. 2012).
© Leibniz Institut (IPK)
Fig. 3: Image-based ‘digital biomass’ (in voxel × 10−7) for four contrasting cultivars Apex (black), Isaria (red), Morex (blue) and Streif (green) in control (a) and stress treatment (b) (Neumann et al. 2015).

Improvement of collection management

Resources required for the conservation management can be optimized by eliminating duplicated accessions from the collection. Molecular markers provide powerful analytical tool to address this issue. However, adequate criteria are needed for decision making. These include to combination information from various additional sources such as Passport data, reference samples and trait related data. Based on the analysis of subsamples of the genebank collections of barley and garden bean  the extent of duplicated samples will be estimated and guidelines for both consolidation and enhancement of the collections will be developed.  

 

Genetics of biomass accumulation

Customized core collections of spring barley representing a broad spectrum of phenotypic and adaptive diversity have been developed as a resource for linkage disequilibrium (LD) mapping. In addition to morphological traits that are based on major genes, the analysis of quantitatively inherited traits affecting yield and quality components are investigated.  Biomass is of major interest as the formation of sufficient amounts of assimilates in source tissue represents a precondition to increase grain yield. Based on the analysis of imaging data, the temporal pattern of biomass accumulation is scrutinized both under stress and control conditions to uncover the genetic architecture of biomass formation, the interplay of QTLs and to identify genes underling this process (Fig. 3).

Publikationen

Autor
Titel
2023

Bellucci E, Benazzo A, Xu C, Bitocchi E, Rodriguez M, Alseekh S, Di Vittori V, Gioia T, Neumann K, Cortinovis G, Frascarelli G, Murube E, Trucchi E, Nanni L, Ariani A, Logozzo G, Shin J H, Liu C, Jiang L, Ferreira J J, Campa A, Attene G, Morrell P L, Bertorelle G, Graner A, Gepts P, Fernie A R, Jackson S A, Papa R:

Selection and adaptive introgression guided the complex evolutionary history of the European common bean. Nat. Commun. 14 (2023) 1908. https://dx.doi.org/10.1038/s41467-023-37332-z

Khodaeiaminjan M, Knoch D, Ndella Thiaw M R, Marchetti C F, Kořínková N, Techer A, Nguyen T D, Chu J, Bertholomey V, Doridant I, Gantet P, Graner A, Neumann K, Bergougnoux V:

Genome-wide association study in two-row spring barley landraces identifies QTL associated with plantlets root system architecture traits in well-watered and osmotic stress conditions. Front. Plant Sci. 14 (2023) 1125672. https://dx.doi.org/10.3389/fpls.2023.1125672

Neumann K, Schulthess A W, Bassi F M, Dhanagond S, Khlestkina E, Börner A, Graner A, Kilian B:

Genomic approaches to using diversity for the adaptation of modern varieties of wheat and barley to climate change. In: Ghamkhar K, Williams W, Brown A H D (Eds.): Plant Genetic Resources for the 21st Century. The OMICS Era. New York: Apple Academic Press (2023) ISBN 9781774910825, 47-78. https://dx.doi.org/10.1201/9781003302957

Sreenivasulu N, Alseekh S, Tiozon R N J, Graner A, Martin C, Fernie A R:

Metabolic signatures from genebank collections: an underexploited resource for human health? Annu. Rev. Food Sci. Technol. 14 (2023) 183-202. https://dx.doi.org/10.1146/annurev-food-060822-113022

2022

Badaeva E D, Konovalov F A, Knüpffer H, Fricano A, Ruban A S, Kehel Z, Zoshchuk S A, Surzhikov S A, Neumann K, Graner A, Hammer K, Filatenko A, Bogaard A, Jones G, Özkan H, Kilian B:

Genetic diversity, distribution and domestication history of the neglected GGAtAt genepool of wheat. Theor. Appl. Genet. 135 (2022) 755–776. https://dx.doi.org/10.1007/s00122-021-03912-0

Bohra A, Bansal K C, Graner A:

The 3366 chickpea genomes for research and breeding. Trends Plant Sci. 27 (2022) 217-219. https://dx.doi.org/10.1016/j.tplants.2021.11.017

Lauterberg M, Saranga Y, Deblieck M, Klukas C, Krugman T, Perovic D, Ordon F, Graner A, Neumann K:

Precision phenotyping across the life cycle to validate and decipher drought-adaptive QTLs of wild emmer wheat (Triticum turgidum ssp. dicoccoides) introduced into elite wheat varieties. Front. Plant Sci. 13 (2022) 965287. https://dx.doi.org/10.3389/fpls.2022.965287

2021

Bellucci E, Aguilar O M, Alseekh S, Bett K, Brezeanu C, Cook D, De la Rosa L, Delledonne M, Dostatny D F, Ferreira J J, Geffroy V, Ghitarrini S, Kroc M, Kumar Agrawal S, Logozzo G, Marino M, Mary-Huard T, McClean P, Meglič V, Messer T, Muel F, Nanni L, Neumann K, Servalli F, Străjeru S, Varshney R K, Vasconcelos M W, Zaccardelli M, Zavarzin A, Bitocchi E, Frontoni E, Fernie A R, Gioia T, Graner A, Guasch L, Prochnow L, Opperman M, Susek K, Tenaillon M, Papa R:

The INCREASE project: Intelligent collections of food-legume genetic resources for European agrofood systems. Plant J. 108 (2021) 646-660. https://dx.doi.org/10.1111/tpj.15472

Cortinovis G, Oppermann M, Neumann K, Graner A, Gioia T, Marsella M, Alseekh S, Fernie A R, Papa R, Bellucci E, Bitocchi E:

Towards the development, maintenance, and standardized phenotypic characterization of single-seed-descent genetic resources for common bean. Curr. Protoc. 1 (2021) e133. https://dx.doi.org/10.1002/cpz1.133

Jiang Y, Weise S, Graner A, Reif J C:

Using genome-wide predictions to assess the phenotypic variation of a barley (Hordeum sp.) gene bank collection for important agronomic traits and passport information. Front. Plant Sci. 11 (2021) 604781. https://dx.doi.org/10.3389/fpls.2020.604781

Kroc M, Tomaszewska M, Czepiel K, Bitocchi E, Oppermann M, Neumann K, Guasch L, Bellucci E, Alseekh S, Graner A, Fernie A R, Papa R, Susek K:

Towards development, maintenance, and standardized phenotypic characterization of single-seed-descent genetic resources for lupins. Curr. Protoc. 1 (2021) e191. https://dx.doi.org/10.1002/cpz1.191

Misra G:

Deciphering the genetic basis of head rice yield, grain size, and cooking quality parameters to enhance rice food security in compliance with capturing consumer preferences. (PhD Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Naturwissenschaftliche Fakultät III Agrar- und Ernährungswissenschaften, Geowissenschaften und Informatik (2021) 89 pp.

Sharma S, Schulthess A W, Bassi F M, Badaeva E D, Neumann K, Graner A, Özkan H, Werner P, Knüpffer H, Kilian B:

Introducing beneficial alleles from plant genetic resources into the wheat germplasm. Biology 10 (2021) 982. https://dx.doi.org/10.3390/biology10100982

Varshney R K, Bohra A, Yu J, Graner A, Zhang Q, Sorrells M E:

Designing future crops: genomics-assisted breeding comes of age. Trends Plant Sci. 26 (2021) 631-649. https://dx.doi.org/10.1016/j.tplants.2021.03.010

2020

Bernhardt N, Brassac J, Dong X, Willing E M, Poskar C H, Kilian B, Blattner F R:

Genome-wide sequence information reveals recurrent hybridization among diploid wheat wild relatives. Plant J. 102 (2020) 493-506. https://dx.doi.org/10.1111/tpj.14641

Bretani G, Rossini L, Ferrandi C, Russell J, Waugh R, Kilian B, Bagnaresi P, Cattivelli L, Fricano A:

Segmental duplications are hot spots of copy number variants affecting barley gene content. Plant J. 103 (2020) 1073-1088. https://dx.doi.org/10.1111/tpj.14784

Grieco M, Roustan V, Dermendjiev G, Rantala S, Jain A, Leonardelli M, Neumann K, Berger V, Engelmeier D, Bachmann G, Ebersberger I, Aro E-M, Weckwerth W, Teige M:

Adjustment of photosynthetic activity to drought and fluctuating light in wheat. Plant Cell Environ. 43 (2020) 1484-1500. https://dx.doi.org/10.1111/pce.13756

Henke M, Junker A, Neumann K, Altmann T, Gladilin E:

A two-step registration-classification approach to automated segmentation of multimodal images for high-throughput greenhouse plant phenotyping. Plant Methods 16 (2020) 95. https://dx.doi.org/10.1186/s13007-020-00637-x

Müller J, Dieter M, Bauhus J, Spellmann H, Möhring B, Wagner S, Wolf H, Niekisch M, Weiger H, Feindt P, Hamm U, Wätzold F, Wolters V, Engels E-M, Schraml U, Lang F, Pröbstl-Haider U, Richter K, Wissenschaftlicher Beirat Waldpolitik, Wissenschaftlicher Beirat Biodiversität und Genetische Ressourcen beim BMEL:

Wege zu einem effizienten Waldnaturschutz in Deutschland. Stellungnahme. Berlin (2020) 62 pp.

Narisetti N, Neumann K, Röder M S, Gladilin E:

Automated spike detection in diverse European wheat plants using textural features and the Frangi filter in 2D greenhouse images. Front. Plant Sci. 11 (2020) 666. https://dx.doi.org/10.3389/fpls.2020.00666

Wätzold F, Feindt P H, Bahrs E, Hamm U, Isselstein J, Schröder S, Wagner S, Wedekind H, Wolters V, Dauber J, Engels E-M, Engels J, Tholen E, Backes G, Brandt H, Graner A, Herdegen M, Wolf H:

Wie die Politik auf die Bedrohung der Biodiversität in Agrarlandschaften durch den Klimawandel reagieren kann. Stellungnahme des Wissenschaftlichen Beirats für Biodiversität und Genetische Ressourcen beim Bundesministerium für Ernährung und Landwirtschaft (WBGGR). Bonn (2020) 2196-5099, 30 pp. https://dx.doi.org/10.12767/buel.vi232

2019

Abdel-Ghani A H, Sharma R, Wabila C, Dhanagond S, Owais S J, Duwayri M A, Al-Dalain S A, Klukas C, Chen D, Lübberstedt T, von Wirén N, Graner A, Kilian B, Neumann K:

Genome-wide association mapping in a diverse spring barley collection reveals the presence of QTL hotspots and candidate genes for root and shoot architecture traits at seedling stage. BMC Plant Biol. 19 (2019) 216. https://dx.doi.org/10.1186/s12870-019-1828-5

Bustos-Korts D, Dawson I K, Russell J, Tondelli A, Guerra D, Ferrandi C, Strozzi F, Nicolazzi E L, Molnar-Lang M, Ozkan H, Megyeri M, Miko P, Cakir E, Yakisir E, Trabanco N, Delbono S, Kyriakidis S, Booth A, Cammarano D, Mascher M, Werner P, Cattivelli L, Rossini L, Stein N, Kilian B, Waugh R, van Eeuwijk F A:

Exome sequences and multi-environment field trials elucidate the genetic basis of adaptation in barley. Plant J. 99 (2019) 1172-1191. https://dx.doi.org/10.1111/tpj.14414

Cutolo E, Parvin N, Ruge H, Pirayesh N, Roustan V, Weckwerth W, Teige M, Grieco M, Larosa V, Vothknecht U C:

The high light response in Arabidopsis requires the calcium sensor protein CAS, a target of STN7-and STN8-mediated phosphorylation. Front. Plant Sci. 10 (2019) 974. https://dx.doi.org/10.3389/Fpls.2019.00974

Dhanagond S, Liu G, Zhao Y, Chen D, Grieco M, Reif J, Kilian B, Graner A, Neumann K:

Non-invasive phenotyping reveals genomic regions involved in pre-anthesis drought tolerance and recovery in spring barley. Front. Plant Sci. 10 (2019) 1307. https://dx.doi.org/10.3389/fpls.2019.01307

Henke M, Junker A, Neumann K, Altmann T, Gladilin E:

Comparison and extension of three methods for automated registration of multimodal plant images. Plant Methods 15 (2019) 44. https://dx.doi.org/10.1186/s13007-019-0426-8

Henke M, Junker A, Neumann K, Altmann T, Gladilin E:

Comparison of feature point detectors for multimodal image registration in plant phenotyping. PLoS One 14 (2019) e0221203. https://dx.doi.org/10.1371/journal.pone.0221203

Jia Z, Liu Y, Gruber B D, Neumann K, Kilian B, Graner A, von Wirén N:

Genetic dissection of root system architectural traits in spring barley. Front. Plant Sci. 10 (2019) 400. https://dx.doi.org/10.3389/fpls.2019.00400

Mago R, Zhang P, Xia X, Zhang J, Hoxha S, Lagudah E, Graner A, Dundas I:

Transfer of stem rust resistance gene SrB from Thinopyrum ponticum into wheat and development of a closely linked PCR-based marker. Theor. Appl. Genet. 132 (2019) 371–382. https://dx.doi.org/10.1007/s00122-018-3224-1

Mascher M, Schreiber M, Scholz U, Graner A, Reif J C, Stein N:

Genebank genomics bridges the gap between the conservation of crop diversity and plant breeding. Nat. Genet. 51 (2019) 1076-1081. https://dx.doi.org/10.1038/s41588-019-0443-6

Milner S G, Jost M, Taketa S, Mazón E R, Himmelbach A, Oppermann M, Weise S, Knüpffer H, Basterrechea M, König P, Schüler D, Sharma R, Pasam R K, Rutten T, Guo G, Xu D, Zhang J, Herren G, Müller T, Krattinger S G, Keller B, Jiang Y, González M Y, Zhao Y, Habekuß A, Färber S, Ordon F, Lange M, Börner A, Graner A, Reif J C, Scholz U, Mascher M, Stein N:

Genebank genomics highlights the diversity of a global barley collection. Nat. Genet. 51 (2019) 319-326. https://doi.org/10.1038/s41588-018-0266-x

Misra G, Anacleto R, Badoni S, Butardo V, Molina L, Graner A, Demont M, Morell M K, Sreenivasulu N:

Dissecting the genome wide genetic variants of milling and appearance quality traits in rice. J. Exp. Bot. 70 (2019) 5115–5130. https://dx.doi.org/10.1093/jxb/erz256

Philipp N, Weise S, Oppermann M, Börner A, Keilwagen J, Kilian B, Arend D, Zhao Y, Graner A, Reif J C, Schulthess A W:

Historical phenotypic data from seven decades of seed regeneration in a wheat ex situ collection. Sci. Data 6 (2019) 137. https://dx.doi.org/10.1038/s41597-019-0146-y

Pont C, Leroy T, Seidel M, Tondelli A, Duchemin W, Armisen D, Lang D, Bustos-Korts D, Goué N, Balfourier F, Molnár-Láng M, Lage J, Kilian B, Özkan H, Waite D, Dyer S, Letellier T, Alaux M, Russell J, Keller B, van Eeuwijk F, Spannagl M, Mayer K F X, Waugh R, Stein N, Cattivelli L, Haberer G, Charmet G, Salse J, Wheat and Barley Legacy for Breeding Improvement Consortium:

Tracing the ancestry of modern bread wheats. Nat. Genet. 51 (2019) 905-911. https://dx.doi.org/10.1038/s41588-019-0393-z

Radchuk V, Sharma R, Potokina E, Radchuk R, Weier D, Munz E, Schreiber M, Mascher M, Stein N, Wicker T, Kilian B, Borisjuk L:

The highly divergent Jekyll genes, required for sexual reproduction, are lineage specific for the related grass tribes Triticeae and Bromeae. Plant J. 98 (2019) 961-974. https://dx.doi.org/10.1111/tpj.14363

van Bezouw R F H M, Janssen E M, Ashrafuzzaman M, Ghahramanzadeh R, Kilian B, Graner A, Visser R G F, van der Linden C G:

Shoot sodium exclusion in salt stressed barley (Hordeum vulgare L.) is determined by allele specific increased expression of HKT1;5. J. Plant Physiol. 241 (2019) 153029. https://dx.doi.org/10.1016/j.jplph.2019.153029

Wabila C, Neumann K, Kilian B, Radchuk V, Graner A:

A tiered approach to genome-wide association analysis for the adherence of hulls to the caryopsis of barley seeds reveals footprints of selection. BMC Plant Biol. 19 (2019) 95. https://dx.doi.org/10.1186/s12870-019-1694-1

2018

Alqudah A M, Youssef H M, Graner A, Schnurbusch T:

Natural variation and genetic make-up of leaf blade area in spring barley. Theor. Appl. Genet. 131 (2018) 873–886. https://dx.doi.org/10.1007/s00122-018-3053-2

Chen D, Shi R, Pape J-M, Neumann K, Arend D, Graner A, Chen M, Klukas C:

Predicting plant biomass accumulation from image-derived parameters. GigaScience 7 (2018) giy001. https://dx.doi.org/10.1093/gigascience/giy001

Feindt P H, Bahrs E, Engels E M, Hamm U, Herdegen M, Isselstein J, Schröder S, Wätzold F, Wolters V, Backes G, Brandt H, Engels J, Graner A, Tholen E, Wagner S, Wedekind H, Wolf H, Wissenschaftlicher Beirat für Biodiversität und Genetische Ressourcen beim BMELV:

Für eine gemeinsame Agrarpolitik, die konsequent zum Erhalt der biologischen Vielfalt beiträgt. Stellungnahme des Wissenschaftlichen Beirats für Biodiversität und Genetische Ressourcen beim Bundesministerium für Ernährung und Landwirtschaft. Bonn (2018) 36 pp.

González M Y, Philipp N, Schulthess A W, Weise S, Zhao Y, Börner A, Oppermann M, Graner A, Reif J C:

Unlocking historical phenotypic data from an ex situ collection to enhance the informed utilization of genetic resources of barley (Hordeum sp.). Theor. Appl. Genet. 131 (2018) 2009-2019. https://dx.doi.org/10.1007/s00122-018-3129-z

González M Y, Weise S, Zhao Y, Philipp N, Arend D, Börner A, Oppermann M, Graner A, Reif J C, Schulthess A W:

Unbalanced historical phenotypic data from seed regeneration of a barley ex situ collection. Sci. Data 5 (2018) 180278. https://dx.doi.org/10.1038/sdata.2018.278

Graner A:

Bewahren und Nutzen: Die Sammlungen von Kulturpflanzen am IPK Gatersleben. In: Karafyllis N C (Ed.): Lebenswissenschaften im Dialog 25: Theorien der Lebendsammlung. Freiburg/München: Verlag Karl Alber (2018) 201-227.

Henke M, Junker A, Neumann K, Altmann T, Gladilin E:

Automated alignment of multi-modal plant images using integrative phase correlation approach. Front. Plant Sci. 9 (2018) 1519. https://dx.doi.org/10.3389/fpls.2018.01519

Kochevenko A, Jiang Y, Seiler C, Surdonja K, Kollers S, Reif J C, Korzun V, Graner A:

Identification of QTL hot spots for malting quality in two elite breeding lines with distinct tolerance to abiotic stress. BMC Plant Biol. 18 (2018) 106. https://dx.doi.org/10.1186/s12870-018-1323-4

Philipp N, Weise S, Oppermann M, Börner A, Graner A, Keilwagen J, Kilian B, Zhao Y S, Reif J C, Schulthess A W:

Leveraging the use of historical data gathered during seed regeneration of an ex situ genebank collection of wheat. Front. Plant Sci. 9 (2018) 609. https://dx.doi.org/10.3389/Fpls.2018.00609

Pournosrat R, Kaya S, Shaaf S, Kilian B, Özkan H:

Geographical and environmental determinants of the genetic structure of wild barley in southeastern Anatolia. PLoS One 13 (2018) e0192386. https://dx.doi.org/10.1371/journal.pone.0192386

Thabet S G, Moursi Y S, Karam M A, Graner A, Alqudah A M:

Genetic basis of drought tolerance during seed germination in barley. PLoS One 13 (2018) e0206682. https://dx.doi.org/10.1371/journal.pone.0206682

Wabila C:

A genome-wide association study to genetically dissect yield related traits in a diverse collection of spring barley landraces. (PhD Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Institut für Agrar- und Ernährungswissenschaften der Naturwissenschaftlichen Fakultät III (2018) 142 pp.

Xu X, Sharma R, Tondelli A, Russell J, Comadran J, Schnaithmann F, Pillen K, Kilian B, Cattivelli L, Thomas W T B, Flavell A J:

Genome-wide association analysis of grain yield-associated traits in a pan-European barley cultivar collection. Plant Genome 11 (2018) 170073. https://dx.doi.org/10.3835/plantgenome2017.08.0073

2017

Bernhardt N, Brassac J, Kilian B, Blattner F R:

Dated tribe-wide whole chloroplast genome phylogeny indicates recurrent hybridizations within Triticeae. BMC Evol. Biol. 17 (2017) 141. https://dx.doi.org/10.1186/s12862-017-0989-9

Dhanagond S:

Association genetics of biomass development under drought stress using high-throughput phenotyping in barley (Hordeum vulgare L.). (PhD Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Institut für Agrar- und Ernährungswissenschaften der Naturwissenschaftlichen Fakultät III (2017) 167 pp.

Misra G, Badoni S, Anacleto R, Graner A, Alexandrov N, Sreenivasulu N:

Whole genome sequencing-based association study to unravel genetic architecture of cooked grain width and length traits in rice. Sci. Rep. 7 (2017) 12478. https://dx.doi.org/10.1038/s41598-017-12778-6

Mitterbauer E, Enders M, Bender J, Erbs M, Habekuß A, Kilian B, Ordon F, Weigel H-J:

Growth response of 98 barley (Hordeum vulgare L.) genotypes to elevated CO2 and identification of related quantitative trait loci using genome-wide association studies. Plant Breed. 136 (2017) 483-497. https://dx.doi.org/10.1111/pbr.12501

Neumann K, Zhao Y, Chu J, Keilwagen J, Reif J C, Kilian B, Graner A:

Genetic architecture and temporal patterns of biomass accumulation in spring barley revealed by image analysis. BMC Plant Biol. 17 (2017) 137. https://dx.doi.org/10.1186/s12870-017-1085-4

Thirulogachandar V, Alqudah A M, Koppolu R, Rutten T, Graner A, Hensel G, Kumlehn J, Bräutigam A, Sreenivasulu N, Schnurbusch T, Kuhlmann M:

Leaf primordium size specifies leaf width and vein number among row-type classes in barley. Plant J. 91 (2017) 601-612. https://dx.doi.org/10.1111/tpj.13590

Yang P, Habekuß A, Hofinger B J, Kanyuka K, Kilian B, Graner A, Ordon F, Stein N:

Sequence diversification in recessive alleles of two host factor genes suggests adaptive selection for bymovirus resistance in cultivated barley from East Asia. Theor. Appl. Genet. 130 (2017) 331-344. https://dx.doi.org/10.1007/s00122-016-2814-z

Youssef H M, Eggert K, Koppolu R, Alqudah A M, Poursarebani N, Fazeli A, Sakuma S, Tagiri A, Rutten T, Govind G, Lundqvist U, Graner A, Komatsuda T, Sreenivasulu N, Schnurbusch T:

VRS2 regulates hormone-mediated inflorescence patterning in barley. Nat. Genet. 49 (2017) 157-161. https://dx.doi.org/10.1038/ng.3717

Youssef H M, Mascher M, Ayoub M A, Stein N, Kilian B, Schnurbusch T:

Natural diversity of inflorescence architecture traces cryptic domestication genes in barley (Hordeum vulgare L.). Genet. Resour. Crop Evol. 64 (2017) 843-853. https://dx.doi.org/10.1007/s10722-017-0504-6

2016

Alqudah A M, Koppolu R, Wolde G M, Graner A, Schnurbusch T:

The genetic architecture of barley plant stature. Front. Genet. 7 (2016) 117. https://dx.doi.org/10.3389/fgene.2016.00117

Badaeva E D, Ruban A S, Zoshchuk S A, Surzhikov S A, Knüpffer H, Kilian B:

Molecular cytogenetic characterization of Triticum timopheevii chromosomes provides new insight on genome evolution of T. zhukovskyi. Plant Syst. Evol. 302 (2016) 943-956. https://dx.doi.org/10.1007/s00606-016-1309-3

Börner A, Worland A J, Law C N, Korzun V, Khlestkina E K, Pshenichnikova T A, Chebotar S, Landjeva S, Kobiljski B, Pestsova E, Osipova S V, Balint A F, Giura A, Kowalczyk K, Agacka-Moldoch M, Simon M R, Castro A M, Chesnokov Y, Tikhenko N, Rehman Arif M A, Nagel M, Neumann K, Navakode S, Lohwasser U, Röder M S:

EWAC – the past 25 years (1991-2015). In: Börner A, Kowalczyk K (Eds.): Proceedings of the 16th International EWAC Conference, 24 - 29 May 2015, Lublin, Poland. (Series: European Wheat Aneuploid Co-operative newsletter, Vol. 16) Gatersleben: Leibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung (2016) 15-26.

Mascher M, Schuenemann V J, Davidovich U, Marom N, Himmelbach A, Hübner S, Korol A, David M, Reiter E, Riehl S, Schreiber M, Vohr S H, Green R E, Dawson I K, Russell J, Kilian B, Muehlbauer G J, Waugh R, Fahima T, Krause J, Weiss E, Stein N:

Genomic analysis of 6,000-year-old cultivated grain illuminates the domestication history of barley. Nat. Genet. 48 (2016) 1089-1093. https://dx.doi.org/10.1038/ng.3611

Russell J, Mascher M, Dawson I K, Kyriakidis S, Calixto C, Freund F, Bayer M, Milne I, Marshall-Griffiths T, Heinen S, Hofstad A, Sharma R, Himmelbach A, Knauft M, van Zonneveld M, Brown J W, Schmid K, Kilian B, Muehlbauer G J, Stein N, Waugh R:

Exome sequencing of geographically diverse barley landraces and wild relatives gives insights into environmental adaptation. Nat. Genet. 48 (2016) 1024-1030. https://dx.doi.org/10.1038/ng.3612

Schmidt M, Kollers S, Maasberg-Prelle A, Grosser J, Schinkel B, Tomerius A, Graner A, Korzun V:

Prediction of malting quality traits in barley based on genome-wide marker data to assess the potential of genomic selection. Theor. Appl. Genet. 129 (2016) 203-213. https://dx.doi.org/10.1007/s00122-015-2639-1

Shaaf S, Sharma R, Baloch F S, Badaeva E D, Knüpffer H, Kilian B, Özkan H:

The grain Hardness locus characterized in a diverse wheat panel (Triticum aestivum L.) adapted to the central part of the Fertile Crescent: genetic diversity, haplotype structure, and phylogeny. Mol. Genet. Genomics 291 (2016) 1259-1275. https://dx.doi.org/10.1007/s00438-016-1180-5

Zacher A, Baum C, de Mol F, Gerowitt B, Dehmer K J, Graner A:

Potentielle Wirkung von Unkräutern auf die P-Mobilisierung unter Mais. Mitt. Ges. Pflanzenbauwiss. 28 (2016) 102-103.

2015

Abdel-Ghani A H, Neumann K, Wabila C, Sharma R, Dhanagond S, Owais S J, Börner A, Graner A, Kilian B:

Diversity of germination and seedling traits in a spring barley (Hordeum vulgare L.) collection under drought simulated conditions. Genet. Resour. Crop Evol. 62 (2015) 275-292. https://dx.doi.org/10.1007/s10722-014-0152-z

Aliyeva-Schnorr L, Beier S, Karafiátová M, Schmutzer T, Scholz U, Doležel J, Stein N, Houben A:

Cytogenetic mapping with centromeric BAC contigs shows that this recombination-poor region comprises more than half of barley chromosome 3H. Plant J. 84 (2015) 385–394. https://dx.doi.org/10.1111/tpj.13006

Alsaleh A, Baloch F S, Derya M, Azrak M, Kilian B, Özkan H, Nachit M:

Genetic linkage map of Anatolian durum wheat derived from a cross of Kunduru-1149 × Cham1. Plant Mol. Biol. Rep. 33 (2015) 209-220. https://dx.doi.org/10.1007/s11105-014-0749-6

Badaeva E D, Keilwagen J, Knüpffer H, Waßermann L, Dedkova O S, Mitrofanova O P, Kovaleva O N, Liapunova O A, Pukhalskiy V A, Özkan H, Graner A, Willcox G, Kilian B:

Chromosomal passports provide new insights into diffusion of emmer wheat. PLoS One 10 (2015) e0128556. https://dx.doi.org/10.1371/journal.pone.0128556

Banaei-Moghaddam A M, Martis M M, Macas J, Gundlach H, Himmelbach A, Altschmied L, Mayer K F, Houben A:

Genes on B chromosomes: Old questions revisited with new tools. Biochim. Biophys. Acta 1849 (2015) 64-70. https://dx.doi.org/10.1016/j.bbagrm.2014.11.007

Brown R H, Singh J, Singh S, Dahleen L S, Lemaux P G, Stein N, Mascher M, Bregitzer P:

Behavior of a modified Dissociation element in barley: a tool for genetic studies and for breeding transgenic barley. Mol. Breed. 35 (2015) 85. https://dx.doi.org/10.1007/s11032-015-0193-9

Chapman J A, Mascher M, Buluç A, Barry K, Georganas E, Session A, Strnadova V, Jenkins J, Seghal S, Oliker L, Schmutz J, Yelick K A, Scholz U, Waugh R, Poland J A, Muehlbauer G J, Stein N, Rokhsar D S:

A whole-genome shotgun approach for assembling and anchoring the hexaploid bread wheat genome. Genome Biol. 16 (2015) 26. https://dx.doi.org/10.1186/s13059-015-0582-8

Colmsee C, Beier S, Himmelbach A, Schmutzer T, Stein N, Scholz U, Mascher M:

BARLEX – the barley draft genome explorer. Mol. Plant 8 (2015) 964-966. https://dx.doi.org/10.1016/j.molp.2015.03.009

Cviková K, Cattonaro F, Alaux M, Stein N, Mayer K F, Doležel J, Bartoš J:

High-throughput physical map anchoring via BAC-pool sequencing. BMC Plant Biol. 15 (2015) 99. https://dx.doi.org/10.1186/s12870-015-0429-1

Dundas I, Zhang P, Verlin D, Graner A, Shepherd K:

Chromosome engineering and physical mapping of the Thinopyrum ponticum translocation in wheat carrying the rust resistance gene Sr26. Crop Sci. 55 (2015) 648-657. https://dx.doi.org/10.2135/cropsci2014.08.0590

Feindt P H, Wolters V, Backes G, Bahrs E, Dempfle L, Engels E M, Engels J, Graner A, Hamm U, Herdegen M, Isselstein J, Konnert M, Schröder S, Schulte-Coerne H, Wagner S, Wätzold F, Wedekind H, Wissenschaftlicher Beirat für Biodiversität und Genetische Ressourcen beim BMELV:

Gründung der Deutschen Genbank landwirtschaftlicher Nutztiere. Kurzstellungnahme des Wissenschaftlichen Beirats für Biodiversität und Genetische Ressourcen beim Bundesministerium für Ernährung und Landwirtschaft, Bundesanstalt für Landwirtschaft und Ernährung (BLE). Bonn (2015) 10 pp.

Karimi-Ashtiyani R, Ishii T, Niessen M, Stein N, Heckmann S, Gurushidze M, Banaei-Moghaddam A M, Fuchs J, Schubert V, Koch K, Weiss O, Demidov D, Schmidt K, Kumlehn J, Houben A:

Point mutation impairs centromeric CENH3 loading and induces haploid plants. Proc. Natl. Acad. Sci. U.S.A. 112 (2015) 11211-11216. https://dx.doi.org/10.1073/pnas.1504333112

Li J, Gyawali Y P, Zhou R, Stein N, Nasuda S, Endo T R:

Comparative study of the structure of chromosome 1R derived from Secale montanum and Secale cereale. Plant Breed. 134 (2015) 675-683. https://dx.doi.org/10.1111/pbr.12314

Li M:

Map-based cloning of the gene albostrians in barley (Hordeum vulgare L.). (PhD Thesis) Berlin, Humboldt-Universität zu Berlin, Lebenswissenschaftliche Fakultät (2015) 140 pp.

Maurer A, Draba V, Jiang Y, Schnaithmann F, Sharma R, Schumann E, Kilian B, Reif J C, Pillen K:

Modelling the genetic architecture of flowering time control in barley through nested association mapping. BMC Genomics 16 (2015) 290. https://dx.doi.org/10.1186/s12864-015-1459-7

Muñoz-Amatriaín M, Lonardi S, Luo M, Madishetty K, Svensson J, Moscou M, Wanamaker S, Jiang T, Kleinhofs A, Muehlbauer G, Wise R, Stein N, Ma Y, Rodriguez E, Kudrna D, Bhat P R, Chao S, Condamine P, Heinen S, Resnik J, Wing R, Witt H N, Alpert M, Beccuti M, Bozdag S, Cordero F, Mirebrahim H, Ounit R, Wu Y, You F, Zheng J, Šimková H, Doležel J, Grimwood J, Schmutz J, Duma D, Altschmied L, Blake T, Bregitzer P, Cooper L, Dilbirligi M, Falk A, Feiz L, Graner A, Gustafson P, Hayes P, Lemaux P, Mammadov J, Close T:

Sequencing of 15,622 gene-bearing BACs clarifies the gene-dense regions of the barley genome. Plant J. 84 (2015) 216-227. https://dx.doi.org/10.1111/tpj.12959

Nagel M, Kranner I, Neumann K, Rolletschek H, Seal C E, Colville L, Fernández-Marín B, Börner A:

Genome-wide association mapping and biochemical markers reveal that seed ageing and longevity are intricately affected by genetic background, developmental and environmental conditions in barley. Plant Cell Environ. 38 (2015) 1011-1022. https://dx.doi.org/10.1111/pce.12474

Neumann K, Klukas C, Friedel S, Rischbeck P, Chen D, Entzian A, Stein N, Graner A, Kilian B:

Dissecting spatio-temporal biomass accumulation in barley under different water regimes using high-throughput image analysis. Plant Cell Environ. 38 (2015) 1980-1996. https://dx.doi.org/10.1111/pce.12516

Perovic J, Silvar C, Perovic D, Stein N, Ordon F:

Fluorescence-based CAPS multiplex genotyping on capillary electrophoresis systems. Bio-protocol 5 (2015) e1472.

Pourkheirandish M, Hensel G, Kilian B, Senthil N, Chen G, Sameri M, Azhaguvel P, Sakuma S, Dhanagond S, Sharma R, Mascher M, Himmelbach A, Gottwald S, Nair S K, Tagiri A, Yukuhiro F, Nagamura Y, Kanamori H, Matsumoto T, Willcox G, Middleton C P, Wicker T, Walther A, Waugh R, Fincher G B, Stein N, Kumlehn J, Sato K, Komatsuda T:

Evolution of the grain dispersal system in barley. Cell 162 (2015) 527-539. https://dx.doi.org/10.1016/j.cell.2015.07.002

Sretenovic Rajicic T, Lübberstedt T, Bach Jensen L, Scholz U, Weber E, Graner A, Dehmer K J:

Single nucleotide polymorphism (SNP) markers for allele quantification in Lolium (Poaceae): development and first applications. In: Budak H, Spangenberg G (Eds.): The Proceedings of the 8th International Symposium on the Molecular Breeding of Forage and Turf. Cham: Springer (2015) 143-163.

Staňková H, Valárik M, Lapitan N V, Berkman P, Batley J, Edwards D, Luo M-C, Tulpová Z, Kubaláková M, Stein N, Doležel J, Šimková H:

Chromosomal genomics facilitates fine mapping of a Russian wheat aphid resistance gene. Theor. Appl. Genet. 128 (2015) 1373-1383. https://dx.doi.org/10.1007/s00122-015-2512-2

Tavakol E, Okagaki R, Verderio G, Shariati V, Hussien A, Bilgic H, Scanlon M J, Todt N R, Close T J, Druka A, Waugh R, Steuernagel B, Ariyadasa R, Himmelbach A, Stein N, Muehlbauer G J, Rossini L:

The barley Uniculme4 gene encodes a BLADE-ON-PETIOLE-like protein that controls tillering and leaf patterning. Plant Physiol. 168 (2015) 164-174. https://dx.doi.org/10.1104/pp.114.252882

Ui H, Sameri M, Pourkheirandish M, Chang M C, Shimada H, Stein N, Komatsuda T, Handa H:

High-resolution genetic mapping and physical map construction for the fertility restorer Rfm1 locus in barley. Theor. Appl. Genet. 128 (2015) 283-290. https://dx.doi.org/10.1007/s00122-014-2428-2

Vu G T H, Schmutzer T, Bull F, Cao H X, Fuchs J, Tran D T, Jovtchev G, Pistrick K, Stein N, Pecinka A, Neumann P, Novák P, Macas J, Dear P H, Blattner F R, Scholz U, Schubert I:

Comparative genome analysis reveals divergent genome size evolution in a carnivorous plant genus. Plant Genome 8 (2015) 1-14. https://dx.doi.org/10.3835/plantgenome2015.04.0021

Wätzold F, Bahrs E, Feindt P H, Hamm U, Isselstein J, Schröder S, Wolters V, Backes G, Dempfle L, Engels E M, Engels J, Graner A, Herdegen M, Konnert M, Schulte-Coerne H, Wagner S, Wedekind H, Wissenschaftlicher Beirat für Biodiversität und Genetische Ressourcen beim BMEL:

Perspektiven für das artenreiche Grünland – Alternativen zum Rückfall in die Belohnung einer Überschussproduktion bei Milch. Kurzstellungnahme des Wissenschaftlichen Beirats für Biodiversität und Genetische Ressourcen beim Bundesministerium für Ernährung und Landwirtschaft. Bonn (2015) 11 pp.

Wendler N, Mascher M, Himmelbach A, Johnston P, Pickering R, Stein N:

Bulbosum to go: a toolbox to utilize Hordeum vulgare/ bulbosum introgressions for breeding and beyond. Mol. Plant 8 (2015) 1507-1519. https://dx.doi.org/10.1016/j.molp.2015.05.004

Zakhrabekova S, Dockter C, Ahmann K, Braumann I, Gough S P, Wendt T, Lundqvist U, Mascher M, Stein N, Hansson M:

Genetic linkage facilitates cloning of Ert-m regulating plant architecture in barley and identified a strong candidate of Ant1 involved in anthocyanin biosynthesis. Plant Mol. Biol. 88 (2015) 609-626. https://dx.doi.org/10.1007/s11103-015-0350-x

Zang W, Eckstein P E, Colin M, Voth D, Himmelbach A, Beier S, Stein N, Scoles G J, Beattie A D:

Fine mapping and identification of a candidate gene for the barley Un8 true loose smut resistance gene. Theor. Appl. Genet. 128 (2015) 1343-1357. https://dx.doi.org/10.1007/s00122-015-2510-4

2014

Alqudah A M, Sharma R, Pasam R K, Graner A, Kilian B, Schnurbusch T:

Genetic dissection of photoperiod response based on GWAS of pre-anthesis phase duration in spring barley. PLoS One 9 (2014) e113120. https://dx.doi.org/10.1371/journal.pone.0113120

Ariyadasa R, Mascher M, Nussbaumer T, Schulte D, Frenkel Z, Poursarebani N, Zhou R, Steuernagel B, Gundlach H, Taudien S, Felder M, Platzer M, Himmelbach A, Schmutzer T, Hedley P E, Muehlbauer G J, Scholz U, Korol A, Mayer K F X, Waugh R, Langridge P, Graner A, Stein N:

A sequence-ready physical map of barley anchored genetically by two million single-nucleotide polymorphisms. Plant Physiol. 164 (2014) 412-423. https://dx.doi.org/10.1104/pp.113.228213

Bolger M E, Weisshaar B, Scholz U, Stein N, Usadel B, Mayer K F:

Plant genome sequencing - applications for crop improvement. Curr. Opin. Biotechnol. 26 (2014) 31-37. https://dx.doi.org/10.1016/j.copbio.2013.08.019

Borgmann P, Schnee R:

Genbanken - Bewahrung der Vielfalt pflanzlichen Lebens. Biol. in der Schule 63 (2014) 4-7.

Braumann I, Stein N, Hansson M:

Reduced chlorophyll biosynthesis in heterozygous barley magnesium chelatase mutants. Plant Physiol. Biochem. 78 (2014) 10-14. https://dx.doi.org/10.1016/j.plaphy.2014.02.004

Chen D, Neumann K, Friedel S, Kilian B, Chen M, Altmann T, Klukas C:

Dissecting the phenotypic components of crop plant growth and drought responses based on high-throughput image analysis. Plant Cell 26 (2014) 4636-4655. https://dx.doi.org/10.1105/tpc.114.129601

Douchkov D, Lück S, Johrde A, Nowara D, Himmelbach A, Rajaraman J, Stein N, Sharma R, Kilian B, Schweizer P:

Discovery of genes affecting resistance of barley to adapted and non-adapted powdery mildew fungi. Genome Biol. 15 (2014) 518. https://dx.doi.org/10.1186/s13059-014-0518-8

Eggeling R, Gohr A, Keilwagen J, Mohr M, Posch S, Smith A D, Grosse I:

On the value of intra-motif dependencies of human insulator protein CTCF. PLoS One 9 (2014) e85629. https://dx.doi.org/10.1371/journal.pone.0085629

Fischer A, Fischer F, Jäger G, Keilwagen J, Molitor P, Grosse I:

Exact algorithms and heuristics for the quadratic traveling salesman problem with an application in bioinformatics. Discrete Appl. Math. 166 (2014) 97-114. https://dx.doi.org/10.1016/j.dam.2013.09.011

Gawroński P, Ariyadasa R, Himmelbach A, Poursarebani N, Kilian B, Stein N, Steuernagel B, Hensel G, Kumlehn J, Sehgal S K, Gill B S, Gould P, Hall A, Schnurbusch T:

A distorted circadian clock causes early flowering and temperature-dependent variation in spike development in the Eps-3Am mutant of einkorn wheat. Genetics 196 (2014) 1253-1261. https://dx.doi.org/10.1534/genetics.113.158444

Gils M, Sreenivasulu N, Graner A:

Molecular breeding for malting quality. In: Shewry P R, Ullrich S (Eds.): Barley: chemistry and technology, 2nd ed. St. Paul, Minnesota: AACC International Inc. (2014) ISBN 978-1-891127-79-3, 293-310.

Himmelbach A, Knauft M, Stein N:

Plant sequence capture optimised for illumina sequencing. Bio-protocol 4 (2014) e1166.

Jakob S S, Rödder D, Engler J O, Shaaf S, Özkan H, Blattner F R, Kilian B:

Evolutionary history of wild barley (Hordeum vulgare subsp. spontaneum) analyzed using multilocus sequence data and paleodistribution modeling. Genome Biol. Evol. 6 (2014) 685-702. https://dx.doi.org/10.1093/gbe/evu047

Keilwagen J, Kilian B, Özkan H, Babben S, Perovic D, Mayer K F, Walther A, Poskar C H, Ordon F, Eversole K, Börner A, Ganal M, Knüpffer H, Graner A, Friedel S:

Separating the wheat from the chaff - a strategy to utilize plant genetic resources from ex situ genebanks. Sci. Rep. 4 (2014) 5231. https://dx.doi.org/10.1038/srep05231

Kilian B, Hammer K:

Elisabeth Schiemann und die Kulturpflanzenforschung, unter besonderer Berücksichtigung der Getreidephylogenie. In: Nürnberg R, Höxtermann E, Voigt M (Eds.): Elisabeth Schiemann 1881-1972, vom Aufbruch der Genetik und der Frauen in den Umbrüchen des 20. Jahrhunderts. (Series: Biologiehistorische Symposien) Rangsdorf: Basilisken-Presse (2014) ISBN 978-3-941365-13-1, 236-261.

Kilian B, Knüpffer H, Hammer K:

Elisabeth Schiemann (1881-1972): a pioneer of crop plant research, with special reference to cereal phylogeny. Genet. Resour. Crop Evol. 61 (2014) 89-106. https://dx.doi.org/10.1007/s10722-013-0017-x

Kumlehn J, Stein N (Eds.):

Biotechnological approaches to barley improvement. (Series: Widholm J., J. Kumlehn & T. Nagata (Eds.): Biotechnology in agriculture and forestry, Vol. 69) Berlin Heidelberg: Springer (2014) ISBN 978-3-662-44405-4, 433 pp.

Kunze G, Gaillardin C, Czernicka M, Durrens P, Martin T, Böer E, Gabaldón T, Cruz J A, Talla E, Marck C, Goffeau A, Barbe V, Baret P, Baronian K, Beier S, Bleykasten C, Bode R, Casaregola S, Despons L, Fairhead C, Giersberg M, Gierski P P, Hähnel U, Hartmann A, Jankowska D, Jubin C, Jung P, Lafontaine I, Leh-Louis V, Lemaire M, Marcet-Houben M, Mascher M, Morel G, Richard G-F, Riechen J, Sacerdot C, Sarkar A, Savel G, Schacherer J, Sherman D J, Stein N, Straub M-L, Thierry A, Trautwein-Schult A, Vacherie B, Westhof E, Worch S, Dujon B, Souciet J-L, Wincker P, Scholz U, Neuvéglise C:

The complete genome of Blastobotrys (Arxula) adeninivorans LS3 - a yeast of biotechnological interest. Biotechnol. Biofuels 7 (2014) 66. https://dx.doi.org/10.1186/1754-6834-7-66

Lüpken T, Stein N, Perovic D, Habekuß A, Serfling A, Krämer I, Hähnel U, Steuernagel B, Scholz U, Ariyadasa R, Martis M M, Mayer K F X, Niks R E, Collins N C, Friedt W, Ordon F:

High resolution mapping of the barley Ryd3 locus controlling tolerance to BYDV. Mol. Breed. 33 (2014) 477-488. https://dx.doi.org/10.1007/s11032-013-9966-1

Mascher M, Jost M, Kuon J E, Himmelbach A, Assfalg A, Beier S, Scholz U, Graner A, Stein N:

Mapping-by-sequencing accelerates forward genetics in barley. Genome Biol. 15 (2014) R78. https://dx.doi.org/10.1186/gb-2014-15-6-r78

Mascher M, Stein N:

Genetic anchoring of whole-genome shotgun assemblies. Front. Genet. 5 (2014) 208. https://dx.doi.org/10.3389/fgene.2014.00208

Mazaheri M, Kianian P M A, Mergoum M, Valentini G L, Seetan R, Pirseyedi S M, Kumar A, Gu Y Q, Stein N, Kubaláková M, Doležel J, Denton A M, Kianian S F:

Transposable element junctions in marker development and genomic characterization of barley. Plant Genome 7 (2014) https://dx.doi.org/10.3835/plantgenome2013.10.0036

Middleton C P, Senerchia N, Stein N, Akhunov E D, Keller B, Wicker T, Kilian B:

Sequencing of chloroplast genomes from wheat, barley, rye and their relatives provides a detailed insight into the evolution of the Triticeae tribe. PLoS One 9 (2014) e85761. https://dx.doi.org/10.1371/journal.pone.0085761

Navakode S, Neumann K, Kobiljski B, Lohwasser U, Börner A:

Genome wide association mapping to identify aluminium tolerance loci in bread wheat. Euphytica 198 (2014) 401-411. https://dx.doi.org/10.1007/s10681-014-1114-4

Pankin A, Campoli C, Dong X, Kilian B, Sharma R, Himmelbach A, Saini R, Davis S J, Stein N, Schneeberger K, von Korff M:

Mapping-by-sequencing identifies HvPHYTOCHROME C as a candidate gene for the early maturity 5 locus modulating the circadian clock and photoperiodic flowering in barley. Genetics 198 (2014) 383-396. https://dx.doi.org/10.1534/genetics.114.165613

Pasam R K, Sharma R, Walther A, Özkan H, Graner A, Kilian B:

Genetic diversity and population structure in a legacy collection of spring barley landraces adapted to a wide range of climates. PLoS One 9 (2014) e116164. https://dx.doi.org/10.1371/journal.pone.0116164

Pasquariello M, Barabaschi D, Himmelbach A, Steuernagel B, Ariyadasa R, Stein N, Gandolfi F, Tenedini E, Bernardis I, Tagliafico E, Pecchioni N, Francia E:

The barley Frost resistance-H2 locus. Funct. Integr. Genomics 14 (2014) 85-100. https://dx.doi.org/10.1007/s10142-014-0360-9

Poursarebani N, Ma L, Schmutzer T, Houben A, Stein N:

FISH mapping for physical map improvement in the large genome of barley: a case study on chromosome 2H. Cytogenet. Genome Res. 143 (2014) 275-279. https://dx.doi.org/10.1159/000366028

Poursarebani N, Nussbaumer T, Šimková H, Šafář J, Witsenboer H, van Oeveren J, International Wheat Genome Sequencing C, Doležel J, Mayer K F X, Stein N, Schnurbusch T:

Whole-genome profiling and shotgun sequencing delivers an anchored, gene-decorated, physical map assembly of bread wheat chromosome 6A. Plant J. 79 (2014) 334-347. https://dx.doi.org/10.1111/tpj.12550

Rembe M:

Untersuchungen zur Nutzbarkeit von Genotyping by Sequencing (GBS) für Assoziationsanalysen bei der Gerste. (Bachelor Thesis) Leipzig, Universität Leipzig, Fakultät für Biowissenschaften, Pharmazie und Psychologie (2014) 43 pp.

Schmutzer T, Ma L, Pousarebani N, Bull F, Stein N, Houben A, Scholz U:

Kmasker – a tool for in silico prediction of single-copy FISH probes for the large-genome species Hordeum vulgare. Cytogenet. Genome Res. 142 (2014) 66-78. https://dx.doi.org/10.1159/000356460

Schulte-Coerne H, Dempfle L, Engels E M, Engels J, Feindt P H, Gerowitt B, Graner A, Hamm U, Heißenhuber A, Wolters V, Schröder S, Wissenschaftlicher Beirat für Biodiversität und Genetische Ressourcen beim BMELV:

Perspektiven der staatlichen Förderung bedrohter Nutztierrassen. Stellungnahme des Wissenschaftlichen Beirats für Biodiversität und Genetische Ressourcen beim Bundesministerium für Ernährung und Landwirtschaft, Bundesanstalt für Landwirtschaft und Ernährung (BLE). Bonn (2014) 12 pp.

Shaaf S, Sharma R, Kilian B, Walther A, Özkan H, Karami E, Mohammadi B:

Genetic structure and eco-geographical adaptation of garlic landraces (Allium sativum L.) in Iran. Genet. Resour. Crop Evol. 61 (2014) 1565-1580. https://dx.doi.org/10.1007/s10722-014-0131-4

Stein N:

Development of sequence resources. In: Kumlehn J, Stein N (Eds.): Biotechnological approaches to barley improvement. (Series: Biotechnology in agriculture and forestry, Vol. 69) Berlin: Springer (2014) ISBN 978-3-662-44405-4, 271-285. https://dx.doi.org/10.1007/978-3-662-44406-1_14

Stein N:

Erfolgstory: Gerste Genomsequenzierung. GFP Geschäftsbericht (2014) 17-18.

Stein N, Steuernagel B:

Advances in sequencing the barley genome. In: Tuberosa R, Graner A, Frison E (Eds.): Genomics of plant genetic resources. Vol. 1. Managing, sequencing and mining genetic resources. Dordrecht [u.a.]: Springer (2014) ISBN 978-94-007-7571-8, 391-403. https://dx.doi.org/10.1007/978-94-007-7572-5_16

Stein N, Yang P, Lüpken P, Ordon F:

New isolated nucleic acid comprising specified nucleotide sequences, useful in a gene marker i.e. useful for the selection and/or isolation of a barley plant having a resistance against yellow mosaic virus. (Patent), Veröffentlichung: 21.08.2014, IPK-Nr. 2012/14. DE102013101617 (2014).

The International Wheat Genome Sequencing Consortium (IWGSC; IPK Authors: Mascher M, Scholz, U. & Stein, N.):

A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome. Science 345 (2014) 1251788. https://dx.doi.org/10.1126/science.1251788

Tuberosa R, Graner A, Frison E (Eds.):

Genomics of plant genetic resources. Vol. 1. Managing, sequencing and mining genetic resources. Dordrecht [u.a.]: Springer (2014) ISBN 978-94-007-7571-8, 710 pp.

Tuberosa R, Graner A, Frison E (Eds.):

Genomics of plant genetic resources. Vol. 2: Crop productivity, food security and nutritional quality. Dordrecht [u.a.]: Springer (2014) ISBN 978-94-007-7574-9, 515 pp.

Wendler N, Mascher M, Nöh C, Himmelbach A, Scholz U, Ruge-Wehling B, Stein N:

Unlocking the secondary gene-pool of barley with next-generation sequencing. Plant Biotechnol. J. 12 (2014) 1122-1131. https://dx.doi.org/10.1111/pbi.12219

Yang P:

Map-based coning of susceptibility factors for Bymovirus in barley (H. vulgare L.). (PhD Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Institut für Agrar- und Ernährungswissenschaften der Naturwissenschaftlichen Fakultät III (2014) 92 pp.

Yang P, Habekuß A, Ordon F, Stein N:

Analysis of bymovirus resistance genes on proximal barley chromosome 4HL provides the basis for precision breeding for BaMMV/BaYMV resistance. Theor. Appl. Genet. 127 (2014) 1625-1634. https://dx.doi.org/10.1007/s00122-014-2324-9

Yang P, Lüpken T, Habekuss A, Hensel G, Steuernagel B, Kilian B, Ariyadasa R, Himmelbach A, Kumlehn J, Scholz U, Ordon F, Stein N:

PROTEIN DISULFIDE ISOMERASE LIKE 5-1 is a susceptibility factor to plant viruses. Proc. Natl. Acad. Sci. U.S.A. 111 (2014) 2104-2109. https://dx.doi.org/10.1073/pnas.1320362111

Zanke C D, Ling J, Plieske J, Kollers S, Ebmeyer E, Korzun V, Argillier O, Stiewe G, Hinze M, Neumann K, Ganal M W, Röder M S:

Whole genome association mapping of plant height in winter wheat (Triticum aestivum L.). PLoS One 9 (2014) e113287. https://dx.doi.org/10.1371/journal.pone.0113287

2013

Andeden E E, Baloch F S, Derya M, Kilian B, Özkan H:

iPBS-Retrotransposons-based genetic diversity and relationship among wild annual Cicer species. J. Plant Biochem. Biotechnol. 22 (2013) 453-466. https://dx.doi.org/10.1007/s13562-012-0175-5

Biselli C, Urso S, Tacconi G, Steuernagel B, Schulte D, Gianinetti A, Bagnaresi P, Stein N, Cattivelli L, Valè G:

Haplotype variability and identification of new functional alleles at the Rdg2a leaf stripe resistance gene locus. Theor. Appl. Genet. 126 (2013) 1575-1586. https://dx.doi.org/10.1007/s00122-013-2075-z

Gerowitt B, Schröder S, Dempfle L, Engels E-M, Engels J, Feindt P H, Graner A, Hamm U, Heißenhuber A, Schulte-Coerne H, Wolters V, Wissenschaftlicher Beirat für Biodiversität und Genetische Ressourcen beim BMELV:

Biodiversität im Grünland – unverzichtbar für Landwirtschaft und Gesellschaft: Stellungnahme des Wissenschaftlichen Beirats für Biodiversität und Genetische Ressourcen beim Bundesministerium für Ernährung, Landwirtschaft und Verbraucherschutz. Bonn (2013) 20 pp.

Grau J, Posch S, Grosse I, Keilwagen J:

A general approach for discriminative de novo motif discovery from high-throughput data. Nucleic Acids Res. 41 (2013) e197. https://dx.doi.org/10.1093/nar/gkt831

Karafiátová M, Bartoš J, Kopecký D, Ma L, Sato K, Houben A, Stein N, Doležel J:

Mapping nonrecombining regions in barley using multicolor FISH. Chromosome Res. 21 (2013) 739-751. https://dx.doi.org/10.1007/s10577-013-9380-x

Koppolu R, Anwar N, Sakuma S, Tagiri A, Lundqvist U, Pourkheirandish M, Rutten T, Seiler C, Himmelbach A, Ariyadasa R, Youssef H M, Stein N, Sreenivasulu N, Komatsuda T, Schnurbusch T:

Six-rowed spike4 (Vrs4) controls spikelet determinacy and row-type in barley. Proc. Natl. Acad. Sci. U. S. A. 110 (2013) 13198-13203. https://dx.doi.org/10.1073/pnas.1221950110

Kuon J-E:

Identification of a many-noded-dwarf gene by using a cloning-by-sequencing approach in barley. (Master Thesis) Stuttgart, Universität Hohenheim, Institut für Pflanzenzüchtung, Saatgutforschung und Populationsgenetik (2013) 55 pp.

Long N V, Dolstra O, Malosetti M, Kilian B, Graner A, Visser R G, van der Linden C G:

Association mapping of salt tolerance in barley (Hordeum vulgare L.). Theor. Appl. Genet. 126 (2013) 2335-2351. https://dx.doi.org/10.1007/s00122-013-2139-0

Lüpken T, Stein N, Perovic D, Habekuss A, Kramer I, Hähnel U, Steuernagel B, Scholz U, Zhou R, Ariyadasa R, Taudien S, Platzer M, Martis M, Mayer K, Friedt W, Ordon F:

Genomics-based high-resolution mapping of the BaMMV/BaYMV resistance gene rym11 in barley (Hordeum vulgare L.). Theor. Appl. Genet. 126 (2013) 1201-1212. https://dx.doi.org/10.1007/s00122-013-2047-3

Martis M M, Zhou R, Haseneyer G, Schmutzer T, Vrána J, Kubaláková M, König S, Kugler K G, Scholz U, Hackauf B, Korzun V, Schön C-C, Doležel J, Bauer E, Mayer K F X, Stein N:

Reticulate evolution of the rye genome. Plant Cell 25 (2013) 3685-3698. https://dx.doi.org/10.1105/tpc.113.114553

Mascher M, Muehlbauer G J, Rokhsar D S, Chapman J, Schmutz J, Barry K, Munoz-Amatriain M, Close T J, Wise R P, Schulman A H, Himmelbach A, Mayer K F, Scholz U, Poland J A, Stein N, Waugh R:

Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ). Plant J. 76 (2013) 718-727. https://dx.doi.org/10.1111/tpj.12319

Mascher M, Richmond T A, Gerhardt D J, Himmelbach A, Clissold L, Sampath D, Ayling S, Steuernagel B, Pfeifer M, DAscenzo M, Akhunov E D, Hedley P E, Gonzales A M, Morrell P L, Kilian B, Blattner F R, Scholz U, Mayer K F, Flavell A J, Muehlbauer G J, Waugh R, Jeddeloh J A, Stein N:

Barley whole exome capture: a tool for genomic research in the genus Hordeum and beyond. Plant J. 76 (2013) 494-505. https://dx.doi.org/10.1111/tpj.12294

Mascher M, Wu S, Amand P S, Stein N, Poland J:

Application of genotyping-by-sequencing on semiconductor sequencing platforms: a comparison of genetic and reference-based marker ordering in barley. PLoS One 8 (2013) e76925. https://dx.doi.org/10.1371/journal.pone.0076925

Matthies I E, Weise S, Förster J, Korzun V, Stein N, Röder M S:

Nitrogen-metabolism related genes in barley - haplotype diversity, linkage mapping and associations with malting and kernel quality parameters. BMC Genet 14 (2013) e77. https://dx.doi.org/10.1186/1471-2156-14-77

McCouch S, Baute G J, Bradeen J, Bramel P, Bretting P K, Buckler E, Burke J M, Charest D, Cloutier S, Cole G, Dempewolf H, Dingkuhn M, Feuillet C, Gepts P, Grattapaglia D, Guarino L, Jackson S, Knapp S, Langridge P, Lawton-Rauh A, Lijua Q, Lusty C, Michael T, Myles S, Naito K, Nelson R L, Pontarollo R, Richards C M, Rieseberg L, Ross-Ibarra J, Rounsley S, Hamilton R S, Schurr U, Stein N, Tomooka N, van der Knaap E, van Tassel D, Toll J, Valls J, Varshney R K, Ward J, Waugh R, Wenzl P, Zamir D:

Agriculture: Feeding the future. Nature 499 (2013) 23-24. https://dx.doi.org/10.1038/499023a

Middleton C P, Stein N, Keller B, Kilian B, Wicker T:

Comparative analysis of genome composition in Triticeae reveals strong variation in transposable element dynamics and nucleotide diversity. Plant J. 73 (2013) 347-356. https://dx.doi.org/10.1111/tpj.12048

Mitterbauer E, Bender J, Erbs M, Enders M, Habekuß A, Kilian B, Ordon F, Weigel H J:

Anpassung der Pflanzenproduktion an den Klimawandel: Untersuchung der Reaktion verschiedener Gerstengenotypen auf zukünftige atmosphärische CO2-Konzentrationen als Grundlage zur züchterischen Optimierung des CO2-Düngeeffektes. In: KLIFF-Tagung - Vom globalen Klimawandel zu regionalen Anpassungsstrategien. Göttingen, Deutschland. (2013) 104-105.

Mitterbauer E, Ordon F, Habekuß A, Erbs M, Enders M, Kilian B, Weigel H J, Giesemann A, Bender J:

Analyses of the responses of different barley genotypes to future CO2 concentrations in order to optimise the CO2 fertilisation effect through plant breeding. In: Vereinigung der Pflanzenzüchter und Saatgutkaufleute Österreichs (Ed.): Resistenz gegen biotischen Stress in der Pflanzenzüchtung: Resistenz gegen abiotischen Stress in der Pflanzenzüchtung, 63. Tagung, 19. -21. November 2012. (Series: Tagung / Vereinigung der Pflanzenzüchter und Saatgutkaufleute Österreichs, Vol. 63) Irdning: Lehr- und Forschungsanstalt für Landwirtschaft Raumberg-Gumpenstein (2013) ISBN 978-3-902559-88-3, 65-68.

Muñoz-Amatriaín M, Eichten S R, Wicker T, Richmond T A, Mascher M, Steuernagel B, Scholz U, Ariyadasa R, Spannagl M, Nussbaumer T, Mayer K F X, Taudien S, Platzer M, Jeddeloh J A, Springer N M, Muehlbauer G J, Stein N:

Distribution, functional impact, and origin mechanisms of copy number variation in the barley genome. Genome Biol. 14 (2013) R58. https://dx.doi.org/10.1186/gb-2013-14-6-r58

Perovic D, Kopahnke D, Steffenson B J, Förster J, König J, Kilian B, Plieske J, Durstewitz G, Korzun V, Kraemer I, Habekuss A, Johnston P, Pickering R, Ordon F:

Genetic fine mapping of a novel leaf rust resistance gene and a barley yellow dwarf virus tolerance (BYDV) introgressed from Hordeum bulbosum by the use of the 9K iSelect chip. In: Zhang G, Li C, Liu X (Eds.): Advance in barley sciences. Proceedings of 11th International Barley Genetics Symposium. Zhejiang and Dordrecht [u.a.]: Zhejiang University Press and Springer (2013) ISBN 978-94-007-4681-7, 269-284. https://dx.doi.org/10.1007/978-94-007-4682-4_23

Perovic J, Silvar C, Koenig J, Stein N, Perovic D, Ordon F:

A versatile fluorescence-based multiplexing assay for CAPS genotyping on capillary electrophoresis systems. Mol. Breed. 32 (2013) 61-69. https://dx.doi.org/10.1007/s11032-013-9852-x

Poursarebani N, Ariyadasa R, Zhou R, Schulte D, Steuernagel B, Martis M M, Graner A, Schweizer P, Scholz U, Mayer K, Stein N:

Conserved synteny-based anchoring of the barley genome physical map. Funct. Integr. Genomics 13 (2013) 339-350. https://dx.doi.org/10.1007/s10142-013-0327-2

Sakuma S, Pourkheirandish M, Hensel G, Kumlehn J, Stein N, Tagiri A, Yamaji N, Ma J F, Sassa H, Koba T, Komatsuda T:

Divergence of expression pattern contributed to neofunctionalization of duplicated HD-Zip I transcription factor in barley. New Phytol. 197 (2013) 939-948. https://dx.doi.org/10.1111/nph.12068

Sharma R:

Genome-wide association studies in diverse gene pools of barley. (PhD Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Institut für Agrar- und Ernährungswissenschaften der Naturwissenschaftlichen Fakultät III (2013) 167 pp.

Tondelli A, Xu X, Moragues M, Sharma R, Schnaithmann F, Ingvardsen C, Manninen O, Comadran J, Russell J, Waugh R, Schulman A H, Pillen K, Rasmussen S K, Kilian B, Cattivelli L, Thomas W T B, Flavell A J:

Structural and temporal variation in genetic diversity of European spring 2-row barley cultivars and association mapping of quantitative traits. Plant Genome 6 (2013) 1-14. https://dx.doi.org/10.3835/plantgenome2013.03.0007

Yang P, Lüpken T, Ordon F, Stein N:

Mittel zur Selektion und/oder Erzeugung von gegen Gelbmosaikvirose resistenter Gerste (Patentantrag). (2013) PAT 1448.

Yang P, Perovic D, Habekuss A, Zhou R, Graner A, Ordon F, Stein N:

Gene-based high-density mapping of the gene rym7 conferring resistance to Barley mild mosaic virus (BaMMV). Mol. Breed. 32 (2013) 27-37. https://dx.doi.org/10.1007/s11032-013-9842-z

2012

acatech - Deutsche Akademie der Technikwissenschaften, Ameling D, Bajorat B, von Braun J, Brinker W, Burger R, Cramer H J, von Dohnanyi K, Ferkel H, Gedaschko A, Glatzel G, Graner A, zu Guttenberg P, Herzig P, Horsfield B, Hüther M, Hüttl R, Jäger M, Konrad K, Kornwachs K, Kratz C, Lochte K, Mosbrugger V, Müller B, Nacke H H, Reisch L, Stitt M, van der Meer R, Vahrenholt F, Voß A, von Weizsäcker C C, Witt C, Zeiß H (Eds.):

Anpassungsstrategien in der Klimapolitik (acatech POSITION). (Series: acatech POSITION) Heidelberg [u.a.]: Springer (2012) ISBN 978-3-642-31938-9, 38 pp.

Ariyadasa R, Stein N:

Advances in BAC-based physical mapping and map integration strategies in plants. J. Biomed. Biotechnol. 2012 (2012) 11 pages, Article ID 184854. https://dx.doi.org./10.1155/2012/184854

Athmer B:

Differentielle Genexpression in Roggen, Weizen und Gerste während der Kälteakklimatisierung und ihr Bezug zur Frosttoleranz. (PhD Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Institut für Agrar- und Ernährungswissenschaften der Naturwissenschaftlichen Fakultät III (2012) 199 pp.

Ben-Israel I, Kilian B, Nida H, Fridman E:

Heterotic Trait Locus (HTL) mapping identifies intra-locus interactions that underlie reproductive hybrid vigor in Sorghum bicolor. PLoS One 7 (2012) e38993. https://dx.doi.org/10.1371/journal.pone.0038993

Buchmann J P, Matsumoto T, Stein N, Keller B, Wicker T:

Interspecies sequence comparison of Brachypodium reveals how transposon activity corrodes genome colinearity. Plant J. 71 (2012) 550-563. https://dx.doi.org/10.1111/j.1365-313X.2012.05007.x

Cockram J, Thiel T, Steuernagel B, Stein N, Taudien S, Bailey P C, OSullivan D M:

Genome dynamics explain the evolution of flowering time CCT domain gene families in the Poaceae. PLoS One 7 (2012) e45307. https://dx.doi.org/10.1371/journal.pone.0045307

Comadran J, Kilian B, Russell J, Ramsay L, Stein N, Ganal M, Shaw P, Bayer M, Thomas W, Marshall D, Hedley P, Tondelli A, Pecchioni N, Francia E, Korzun V, Walther A, Waugh R:

Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley. Nat. Genet. 44 (2012) 1388-1392. https://dx.doi.org/10.1038/ng.2447

Cömertpay G, Baloch F S, Kilian B, Ülger A C, Özkan H:

Morphological and genetic diversity among Turkish maize landraces. Plant Mol. Biol. Rep. 30 (2012) 261-274. https://dx.doi.org/10.1007/s11105-011-0332-3

Feuillet C, Stein N, Rossini L, Praud S, Mayer K, Schulman A, Eversole K, Appels R:

Integrating cereal genomics to support innovation in the Triticeae. Funct. Integr. Genomics 12 (2012) 573-583. https://dx.doi.org/10.1007/s10142-012-0300-5

Houston K, Druka A, Bonar N, Macaulay M, Lundqvist U, Franckowiak J, Morgante M, Stein N, Waugh R:

Analysis of the barley bract suppression gene Trd1. Theor. Appl. Genet. 125 (2012) 33-45. https://dx.doi.org/10.1007/s00122-012-1814-x

Hübner S, Günther T, Flavell A, Fridman E, Graner A, Korol A, Schmid K J:

Islands and streams: clusters and gene flow in wild barley populations from the Levant. Mol. Ecol. 21 (2012) 1115-1129. https://dx.doi.org/10.1111/j.1365-294X.2011.05434.x

Huynh B L, Mather D E, Schreiber A W, Toubia J, Baumann U, Shoaei Z, Stein N, Ariyadasa R, Stangoulis J C, Edwards J, Shirley N, Langridge P, Fleury D:

Clusters of genes encoding fructan biosynthesizing enzymes in wheat and barley. Plant Mol. Biol. 80 (2012) 299-314. https://dx.doi.org/10.1007/s11103-012-9949-3

Kapusi E, Ma L, Teo C H, Hensel G, Himmelbach A, Schubert I, Mette M F, Kumlehn J, Houben A:

Telomere-mediated truncation of barley chromosomes. Chromosoma 121 (2012) 181-190. https://dx.doi.org/10.1007/s00412-011-0351-8

Karaköy T, Erdem H, Baloch F S, Toklu F, Eker S, Kilian B, Özkan H:

Diversity of macro- and micronutrients in the seeds of lentil landraces. Sci. World J. (2012) 9 pages, Article ID: 710412 https://dx.doi.org/10.1100/2012/710412

Kilian B, Graner A:

NGS technologies for analyzing germplasm diversity in genebanks. Brief. Funct. Genomics 11 (2012) 38-50. https://dx.doi.org/10.1093/bfgp/elr046

Kilian B, Özkan H, Shaaf S, Hübner S, Pasam R K, Sharma R, Neumann K, Weißgerber W, Konovalov F A, Keilwagen J, Friedel S, Knüpffer H, von Korff M, Coupland G, Graner A:

Comparing genetic diversity within a crop and its wild progenitor: a case study for barley. In: Maxted N, Dulloo M E, Ford-Lloyd B V, Frese L, Iriondo J M, Pinheiro de Carvalho M A A (Eds.): Agrobiodiversity conservation: securing the diversity of crop wild relatives and landraces. Wallingford [u.a.]: CABI Publishing (2012) ISBN 978-1-84593-851-2, 186-192.

Mameaux S, Cockram J, Thiel T, Steuernagel B, Stein N, Taudien S, Jack P, Werner P, Gray J C, Greenland A J, Powell W:

Molecular, phylogenetic and comparative genomic analysis of the cytokinin oxidase/dehydrogenase gene family in the Poaceae. Plant Biotechnol. J. 10 (2012) 67-82. https://dx.doi.org/10.1111/j.1467-7652.2011.00645.x

Martis M M, Klemme S, Banaei Moghaddam A M, Blattner F R, Macas J, Schmutzer T, Scholz U, Gundlach H, Wicker T, Šimková H, Novák P, Neumann P, Kubaláková M, Bauer E, Haseneyer G, Fuchs J, Doležel J, Stein N, Mayer K F X, Houben A:

Selfish supernumerary chromosome reveals its origin as a mosaic of host genome and organellar sequences. Proc. Natl. Acad. Sci. U.S.A. 109 (2012) 13343-13346. https://dx.doi.org/10.1073/pnas.1204237109

Mayer K F X, Waugh R, Langridge P, Close T J, Wise R P, Graner A, Matsumoto T, Sato K, Schulman A, Ariyadasa R, Schulte D, Poursarebani N, Zhou R, Steuernagel B, Mascher M, Scholz U, Shi B, Madishetty K, Svensson J T, Bhat P, Moscou M, Resnik J, Muehlbauer G J, Hedley P, Liu H, Morris J, Frenkel Z, Korol A, Bergès H, Taudien S, Felder M, Groth M, Platzer M, Himmelbach A, Lonardi S, Duma D, Alpert M, Cordero F, Beccuti M, Ciardo G, Ma Y, Wanamaker S, Cattonaro F, Vendramin V, Scalabrin S, Radovic S, Wing R, Morgante M, Nussbaumer T, Gundlach H, Martis M, Poland J, Pfeifer M, Moisy C, Tanskanen J, Zuccolo A, Spannagl M, Russell J, Druka A, Marshall D, Bayer M, Swarbreck D, Sampath D, Ayling S, Febrer M, Caccamo M, Tanaka T, Wannamaker S, Schmutzer T, Brown J W S, Fincher G B, Stein N:

A physical, genetic and functional sequence assembly of the barley genome. Nature 491 (2012) 711-716. https://dx.doi.org/10.1038/nature11543

Nagel M, Daniel I O, Gäbler M, Pasam R K, Rehman Arif M A, Kilian B, Börner A:

Seed longevity in a barley collection - variation and gene identification. In: Börner A, Kobijlski B (Eds.): Proceedings of the 15th International EWAC Conference, 7 - 11 November 2011, Novi Sad, Serbia. (Series: European Wheat Aneuploid Co-operative newsletter, Vol. 15) Gatersleben: Leibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung (2012) 151-158.

Neumann K, Stein N, Graner A, Klukas C, Entzian A, Kilian B:

Non-destructive phenotyping using the high-throughput LemnaTec-Scanalyzer 3D platform to investigate drought tolerance in barley. In: Börner A, Kobijlski B (Eds.): Proceedings of the 15th International EWAC Conference, 7 - 11 November 2011, Novi Sad, Serbia. (Series: European Wheat Aneuploid Co-operative newsletter, Vol. 15) Gatersleben: Leibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung (2012) 158-160.

Pasam R K:

Development of stratified barley populations for association mapping studies. (PhD Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Institut für Agrar- und Ernährungswissenschaften der Naturwissenschaftlichen Fakultät III (2012) 167 pp.

Pasam R K, Sharma R, Malosetti M, van Eeuwijk F A, Haseneyer G, Kilian B, Graner A:

Genome-wide association studies for agronomical traits in a world wide spring barley collection. BMC Plant Biol. 12 (2012) 16. https://dx.doi.org/10.1186/1471-2229-12-16

Perovic D, König J, Kopahnke D, Steffenson B J, Förster J, Kilian B, Plieske J, Durstewitz G, Ordon F:

MBR1012 x Scarlett: A new DH population for genetic dissection of resistance to different pathogens in barley. In: Börner A, Kobijlski B (Eds.): Proceedings of the 15th International EWAC Conference, 7 - 11 November 2011, Novi Sad, Serbia. (Series: European Wheat Aneuploid Co-operative newsletter, Vol. 15) Gatersleben: Leibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung (2012) 82-86.

Poursarebani N:

A genetically anchored physical map of barley chromosome 2H. (PhD Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg, Institut für Agrar- und Ernährungswissenschaften der Naturwissenschaftlichen Fakultät III (2012) 106 pp.

Shahinnia F, Druka A, Franckowiak J, Morgante M, Waugh R, Stein N:

High resolution mapping of Dense spike-ar (dsp.ar) to the genetic centromere of barley chromosome 7H. Theor. Appl. Genet. 124 (2012) 373-384. https://dx.doi.org/10.1007/s00122-011-1712-7

Spies A, Korzun V, Bayles R, Rajaraman J, Himmelbach A, Hedley P E, Schweizer P:

Allele mining in barley genetic resources reveals genes of race-non-specific powdery mildew resistance. Front. Plant Sci. 2 (2012) 113. https://dx.doi.org/10.3389/fpls.2011.00113

Varshney R K, Paulo M J, Grando S, van Eeuwijk F A, Keizer L C P, Guo P, Ceccarelli S, Kilian A, Baum M, Graner A:

Genome wide association analyses for drought tolerance related traits in barley (Hordeum vulgare L.). Field Crops Res. 126 (2012) 171-180. https://dx.doi.org/10.1016/j.fcr.2011.10.008

Zakhrabekova S, Gough S P, Braumann I, Müller A H, Lundqvist J, Ahmann K, Dockter C, Matyszczak I, Kurowska M, Druka A, Waugh R, Graner A, Stein N, Steuernagel B, Lundqvist U, Hansson M:

Induced mutations in circadian clock regulator Mat-a facilitated short-season adaptation and range extension in cultivated barley. Proc. Natl. Acad. Sci. U.S.A. 109 (2012) 4326-4331. https://dx.doi.org/10.1073/pnas.1113009109

2011

Andeden E E, Yediay F E, Baloch F S, Shaaf S, Kilian B, Nachit M, Özkan H:

Distribution of vernalization and photoperiod genes (Vrn-A1, Vrn-B1, Vrn-D1, Vrn-B3, Ppd-D1) in Turkish bread wheat cultivars and landraces. Cereal Res. Commun. 39 (2011) 352-364. https://dx.doi.org/10.1556/Crc.39.2011.3.5

Comadran J, Ramsay L, Mackenzie K, Hayes P, Close T J, Muehlbauer G, Stein N, Waugh R:

Patterns of polymorphism and linkage disequilibrium in cultivated barley. Theor. Appl. Genet. 122 (2011) 523-531. https://dx.doi.org/10.1007/s00122-010-1466-7

Druka A, Franckowiak J, Lundqvist U, Bonar N, Alexander J, Houston K, Radovic S, Shahinnia F, Vendramin V, Morgante M, Stein N, Waugh R:

Genetic dissection of barley morphology and development. Plant Physiol. 155 (2011) 617-627. https://dx.doi.org/10.1104/pp.110.166249

Graner A, Haseneyer G, Kilian B, Pasam R K, Sharma R, Stein N:

Nutzung genetischer Vielfalt: Herausforderung und Perspektiven. Agrar Spektrum 44 (2011) 45-61.

Graner A, Kilian A, Kleinhofs A:

Barley genome organization, mapping and synteny. In: Ullrich S E (Ed.): Barley production, improvement, and uses. (World agriculture series) Oxford: Wiley-Blackwell (2011) ISBN 978-0-8138-0123-0, 63-84.

Hartmann A, Czauderna T, Hoffmann R, Stein N, Schreiber F:

HTPheno: An image analysis pipeline for high-throughput plant phenotyping. BMC Bioinformatics 12 (2011) 148. https://dx.doi.org/10.1186/1471-2105-12-148

Haseneyer G, Schmutzer T, Seidel M, Zhou R, Mascher M, Schon C C, Taudien S, Scholz U, Stein N, Mayer K F, Bauer E:

From RNA-seq to large-scale genotyping - genomics resources for rye (Secale cereale L.). BMC Plant Biol. 11 (2011) 131. https://dx.doi.org/10.1186/1471-2229-11-131

Jost M:

Genetische Kartierung der Ährenmorphologie – Mutante laxatum.a in Gerste. (Diploma Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg (2011) 69 pp.

Kilian B, Mammen K, Millet E, Sharma R, Graner A, Salamini F, Hammer K, Özkan H:

Aegilops, L. In: Kole C (Ed.): Wild crop relatives: genomic and breeding resources: cereals. Berlin [u.a.]: Springer (2011) ISBN 978-3-642-14227-7, 1-76. https://dx.doi.org/10.1007/978-3-642-14228-4_1

Liu H, McNicol J, Bayer M, Morris J A, Cardle L, Marshall D F, Schulte D, Stein N, Shi B J, Taudien S, Waugh R, Hedley P E:

Highly parallel gene-to-BAC addressing using microarrays. Biotechniques 50 (2011) 165-174. https://dx.doi.org/10.2144/000113627

Mayer K F X, Martis M, Hedley P E, Šimková H, Liu H, Morris J A, Steuernagel B, Taudien S, Roessner S, Gundlach H, Kubaláková M, Suchánková P, Murat F, Felder M, Nussbaumer T, Graner A, Salse J, Endo T, Sakai H, Tanaka T, Itoh T, Sato K, Platzer M, Matsumoto T, Scholz U, Doležel J, Waugh R, Stein N:

Unlocking the barley genome by chromosomal and comparative genomics. Plant Cell 23 (2011) 1249-1263. https://dx.doi.org/10.1105/tpc.110.082537

Özkan H, Willcox G, Graner A, Salamini F, Kilian B:

Geographic distribution and domestication of wild emmer wheat (Triticum dicoccoides). Genet. Resour. Crop Evol. 58 (2011) 11-53. https://dx.doi.org/10.1007/s10722-010-9581-5

Schulte D, Ariyadasa R, Shi B, Fleury D, Saski C, Atkins M, Dejong P, Wu C C, Graner A, Langridge P, Stein N:

BAC library resources for map-based cloning and physical map construction in barley (Hordeum vulgare L.). BMC Genomics 12 (2011) 247. https://dx.doi.org/10.1186/1471-2164-12-247

Schweizer P, Stein N:

Large-scale data integration reveals co-localization of gene functional groups with meta-QTL for multiple disease resistance in barley. Mol. Plant Microbe Interact. 24 (2011) 1492-1501. https://dx.doi.org/10.1094/MPMI-05-11-0107

Sharma S, Sharma S, Kopisch-Obuch F J, Keil T, Laubach E, Stein N, Graner A, Jung C:

QTL analysis of root-lesion nematode resistance in barley: 1. Pratylenchus neglectus. Theor. Appl. Genet. 122 (2011) 1321-1330. https://dx.doi.org/10.1007/s00122-011-1533-8

Taudien S, Steuernagel B, Ariyadasa R, Schulte D, Schmutzer T, Groth M, Felder M, Petzold A, Scholz U, Mayer K F, Stein N, Platzer M:

Sequencing of BAC pools by different next generation sequencing platforms and strategies. BMC Res Notes 4 (2011) 411. https://dx.doi.org/10.1186/1756-0500-4-411

Tuberosa R, Graner A, Varshney R K:

Genomics of plant genetic resources: an introduction. Plant Genet. Resour. 9 (2011) 151-154. https://dx.doi.org/10.1017/S1479262111000700

Weißgerber W:

Evolution der Spindelbrüchigkeit bei Gerste. (Diploma Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg (2011) 152 pp.

Wicker T, Mayer K F X, Gundlach H, Martis M, Steuernagel B, Scholz U, Šimková H, Kubaláková M, Choulet F, Taudien S, Platzer M, Feuillet C, Fahima T, Budak H, Doležel J, Keller B, Stein N:

Frequent gene movement and pseudogene evolution is common to the large and complex genomes of wheat, barley, and their relatives. Plant Cell 23 (2011) 1706-1718. https://dx.doi.org/10.1105/tpc.111.086629

Yediay F E, Andeden E E, Baloch F S, Börner A, Kilian B, Özkan H:

The allelic state at the major semi-dwarfing genes in a panel of Turkish bread wheat cultivars and landraces. Plant Genet. Resour. 9 (2011) 423-429. https://dx.doi.org/10.1017/S1479262111000578

2010

Cockram J, White J, Zuluaga D L, Smith D, Comadran J, Macaulay M, Luo Z, Kearsey M J, Werner P, Harrap D, Tapsell C, Liu H, Hedley P E, Stein N, Schulte D, Steuernagel B, Marshall D F, Thomas W T, Ramsay L, Mackay I, Balding D J, Consortium T A, Waugh R, OSullivan D M:

Genome-wide association mapping to candidate polymorphism resolution in the unsequenced barley genome. Proc. Natl. Acad. Sci. U. S. A. 107 (2010) 21611-21616. https://dx.doi.org/10.1073/pnas.1010179107

Druka A, Franckowiak J, Lundqvist U, Bonar N, Alexander J, Guzy-Wrobelska J, Ramsay L, Druka I, Grant I, Macaulay M, Vendramin V, Shahinnia F, Radovic S, Houston K, Harrap D, Cardle L, Marshall D, Morgante M, Stein N, Waugh R:

Exploiting induced variation to dissect quantitative traits in barley. Biochem. Soc. Trans. 38 (2010) 683-688. https://dx.doi.org/10.1042/BST0380683

Glaszmann J, Kilian B, Upadhyaya H, Varshney R:

Accessing genetic diversity for crop improvement. Curr. Opin. Plant Biol. 13 (2010) 167-173. https://dx.doi.org/10.1016/j.pbi.2010.01.004

Graner A:

Begrüßung. In: Wobus A M, Wobus U, Parthier B (Eds.): Der Begriff der Natur. Wandlungen unseres Naturverständnisses und seine Folgen. Gaterslebener Begegnung 2009. (Nova Acta Leopoldina, Bd.: 109, Heft 376,) Stuttgart: Wissenschaftliche Verlagsgesellschaft (2010) ISBN 978-3-8047-2801-1, 9-11.

Graner A:

Research along the value chain of biodiversity. Public Service Review. Sci. Technol. 7 (2010) 160-161.

Haseneyer G, Stracke S, Paul C, Einfeldt C, Broda A, Piepho H P, Graner A, Geiger H H:

Population structure and phenotypic variation of a spring barley world collection set up for association studies. Plant Breed. 129 (2010) 271-279. https://dx.doi.org/10.1111/j.1439-0523.2009.01725.x

Haseneyer G, Stracke S, Piepho H P, Sauer S, Geiger H H, Graner A:

DNA polymorphisms and haplotype patterns of transcription factors involved in barley endosperm development are associated with key agronomic traits. BMC Plant Biol. 10 (2010) 5. https://dx.doi.org/10.1186/1471-2229-10-5

Kilian B, Martin W, Salamini F:

Genetic diversity, evolution and domestication of wheat and barley in the Fertile Crescent. In: Glaubrecht M (Ed.): Evolution in action: case studies in adaptive radiation, speciation and the origin of biodiversity. Heidelberg [u.a.]: Springer (2010) ISBN 978-3-642-12424-2, 137-166. https://dx.doi.org/10.1007/978-3-642-12425-9_8

Kocsy G, Athmer B, Perovic D, Himmelbach A, Szücs A, Vashegyi I, Schweizer P, Galiba G, Stein N:

Regulation of gene expression by chromosome 5A during cold hardening in wheat. Mol. Genet. Genomics 283 (2010) 351-363. https://dx.doi.org/10.1007/s00438-010-0520-0

Ma L, Vu G T, Schubert V, Watanabe K, Stein N, Houben A, Schubert I:

Synteny between Brachypodium distachyon and Hordeum vulgare as revealed by FISH. Chromosome Res. 18 (2010) 841-850. https://dx.doi.org/10.1007/s10577-010-9166-3

Nair S K, Wang N, Turuspekov Y, Pourkheirandish M, Sinsuwongwat S, Chen G X, Sameri M, Tagiri A, Honda I, Watanabe Y, Kanamori H, Wicker T, Stein N, Nagamura Y, Matsumoto T, Komatsuda T:

Cleistogamous flowering in barley arises from the suppression of microRNA-guided HvAP2 mRNA cleavage. Proc. Natl. Acad. Sci. U.S.A. 107 (2010) 490-495. https://dx.doi.org/10.1073/pnas.0909097107

Ordon F, Graner A:

PCR in der Pflanzenzüchtung: Resistenz gegen die Gelbmosaikvirose der Gerste. Biospektrum 5 (2010) 539-542.

Özer S, Karaköy T, Toklu F, Baloch F S, Kilian B, Özkan H:

Nutritional and physicochemical variation in Turkish kabuli chickpea (Cicer arietinum L.) landraces. Euphytica 175 (2010) 237-249. https://dx.doi.org/10.1007/s10681-010-0174-3

Özkan H, Tuna M, Kilian B, Baloch F S, Mori N, Ohta S:

Genome size variation in diploid and tetraploid wild wheats. AoB Plants 2010 (2010) plq015. https://dx.doi.org/10.1093/aobpla/plq015

Sečenji M, Lendvai Á, Miskolczi P, Kocsy G, Gallé Á, Szucs A, Hoffmann B, Sárvári É, Schweizer P, Stein N, Dudits D, Györgyey J:

Differences in root functions during long-term drought adaptation: comparison of active gene sets of two wheat genotypes. Plant Biol. 12 (2010) 871-882. https://dx.doi.org/10.1111/j.1438-8677.2009.00295.x

Sharma S, Sharma R:

Biotechnology and sustainable agriculture marker assisted selection. In: Sengar R S, Sharma A K (Eds.): Stable food production and sustainable agriculture: a challenge ahead in 21st century. New Delhi, India: Studium Press (2010) ISBN 978-93-80012-14-8, 335-351.

Stich B, Haussmann B I, Pasam R, Bhosale S, Hash C T, Melchinger A E, Parzies H K:

Patterns of molecular and phenotypic diversity in pearl millet [Pennisetum glaucum (L.) R. Br.] from West and Central Africa and their relation to geographical and environmental parameters. BMC Plant Biol. 10 (2010) 216. https://dx.doi.org/10.1186/1471-2229-10-216

Tuberosa R, Graner A:

Second Congress on Genomics of Plant Genetic Resources (GPGR2). Biovers. Newslett. Europ. 40 (2010) 10.

Varshney R K, Baum M, Guo P, Grando S, Ceccarelli S, Graner A:

Features of SNP and SSR diversity in a set of ICARDA barley germplasm collection. Mol. Breed. 26 (2010) 229-242. https://dx.doi.org/10.1007/s11032-009-9373-9

Vu G T, Wicker T, Buchmann J P, Chandler P M, Matsumoto T, Graner A, Stein N:

Fine mapping and syntenic integration of the semi-dwarfing gene sdw3 of barley. Funct. Integr. Genomics 10 (2010) 509-521. https://dx.doi.org/10.1007/s10142-010-0173-4

Wang G, Schmalenbach I, von Korff M, Léon J, Kilian B, Rode J, Pillen K:

Association of barley photoperiod and vernalization genes with QTLs for flowering time and agronomic traits in a BC2DH population and a set of wild barley introgression lines. Theor. Appl. Genet. 120 (2010) 1559-1574. https://dx.doi.org/10.1007/s00122-010-1276-y

Waugh R, Marshall D, Thomas B, Comadran J, Russell J, Close T, Stein N, Hayes P, Muehlbauer G, Cockram J, OSullivan D, Mackay I, Flavell A, Ramsay L:

Whole-genome association mapping in elite inbred crop varieties. Genome 53 (2010) 967-972. https://dx.doi.org/10.1139/g10-078

Yediay F E, Baloch F S, Kilian B, Özkan H:

Testing of rye-specific markers located on 1RS chromosome and distribution of 1AL.RS and 1BL.RS translocations in Turkish wheat (Triticum aestivum L., T. durum Desf.) varieties and landraces. Genet. Resour. Crop Evol. 57 (2010) 119-129. https://dx.doi.org/10.1007/s10722-009-9456-9

2009

Bolot S, Abrouk M, Masood-Quraishi U, Stein N, Messing J, Feuillet C, Salse J:

The inner circle of the cereal genomes. Curr. Opin. Plant Biol. 12 (2009) 119-125. https://dx.doi.org/10.1016/j.pbi.2008.10.011

Close T J, Bhat P R, Lonardi S, Wu Y, Rostoks N, Ramsay L, Druka A, Stein N, Svensson J T, Wanamaker S, Bozdag S, Roose M L, Moscou M J, Chao S, Varshney R K, Szucs P, Sato K, Hayes P M, Matthews D E, Kleinhofs A, Muehlbauer G J, DeYoung J, Marshall D F, Madishetty K, Fenton R D, Condamine P, Graner A, Waugh R:

Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10 (2009) 582. https://dx.doi.org/10.1186/1471-2164-10-582

Eversole K, Graner A, Stein N:

Wheat and barley genome sequencing. In: Feuillet C, Muehlbauer G (Eds.): Genetics and genomics of the Triticeae, 1st ed. (Series: Plant genetics and genomics: crops and models, Vol. 7) New York, NY: Springer (2009) ISBN 978-0-387-77488-6, 713-742. https://dx.doi.org/10.1007/978-0-387-77489-3_24

Gottwald S, Bauer P, Komatsuda T, Lundqvist U, Stein N:

TILLING in the two-rowed barley cultivar Barke reveals preferred sites of functional diversity in the gene HvHox1. BMC Res. Notes 2 (2009) 258. https://dx.doi.org/10.1186/1756-0500-2-258

Graner A:

Nutzung von pflanzengenetischen Ressourcen. Vortr. Pflanzenzücht. 81 (2009) 71-81.

Gray J, Bevan M, Brutnell T, Buell C R, Cone K, Hake S, Jackson D, Kellogg E, Lawrence C, McCouch S, Mockler T, Moose S, Paterson A, Peterson T, Rokshar D, Souza G M, Springer N, Stein N, Timmermans M, Wang G L, Grotewold E:

A recommendation for naming transcription factor proteins in the grasses. Plant Physiol. 149 (2009) 4-6. https://dx.doi.org/10.1104/pp.108.128504

Guo P, Baum M, Grando S, Ceccarelli S, Bai G, Li R, von Korff M, Varshney R K, Graner A, Valkoun J:

Differentially expressed genes between drought-tolerant and drought-sensitive barley genotypes in response to drought stress during the reproductive stage. J. Exp. Bot. 60 (2009) 3531-3544. https://dx.doi.org/10.1093/jxb/erp194

Haseneyer G:

Bridging genomics and genetic diversity: association between gene polymorphism and trait variation in a spring barley collection. (PhD Thesis) Stuttgart, Universität Hohenheim (2009) 181 pp.

Hübner S, Höffken M, Oren E, Haseneyer G, Stein N, Graner A, Schmid K, Fridman E:

Strong correlation of wild barley (Hordeum spontaneum) population structure with temperature and precipitation variation. Mol. Ecol. 18 (2009) 1523-1536. https://dx.doi.org/10.1111/j.1365-294X.2009.04106.x

Kilian B:

Genetic diversity, evolution and domestication of Triticeae in the Fertile Crescent. Vortr. Pflanzenzücht. 78 (2009) 19-30.

Kilian B, Özkan H, Pozzi C, Salamini F:

Domestication of the Triticeae in the Fertile Crescent. In: Feuillet C, Muehlbauer G (Eds.): Genetics and genomics of the Triticeae, 1st ed. (Series: Plant genetics and genomics: crops and models, Vol. 7) New York, NY: Springer (2009) ISBN 978-0-387-77488-6, 81-119. https://dx.doi.org/10.1007/978-0-387-77489-3_3

Lenz K:

Kartierung des albostrians-Gens der Mutante 4205 von Hordeum vulgare (Bachelor Thesis) Berlin, Humboldt-Universität zu Berlin (2009) 61 pp.

Mayer K F, Taudien S, Martis M, Simkova H, Suchankova P, Gundlach H, Wicker T, Petzold A, Felder M, Steuernagel B, Scholz U, Graner A, Platzer M, Dolezel J, Stein N:

Gene content and virtual gene order of barley chromosome 1H. Plant Physiol. 151 (2009) 496-505. https://dx.doi.org/10.1104/pp.109.142612

Schulte D, Close T J, Graner A, Langridge P, Matsumoto T, Muehlbauer G, Sato K, Schulman A H, Waugh R, Wise R P, Stein N:

The international barley sequencing consortium--at the threshold of efficient access to the barley genome. Plant Physiol. 149 (2009) 142-147. https://dx.doi.org/10.1104/pp.108.128967

Shahinnia F, Sayed-Tabatabaei B E, Sato K, Pourkheirandish M, Komatsuda T:

Mapping of QTL for intermedium spike on barley chromosome 4H using EST-based markers. Breed. Sci. 59 (2009) 383-390. https://dx.doi.org/10.1270/jsbbs.59.383

Stein N:

Physical mapping in the Triticeae. In: Feuillet C, Muehlbauer G (Eds.): Genetics and genomics of the Triticeae, 1st ed. (Series: Plant genetics and genomics: crops and models, Vol. 7) New York, NY: Springer (2009) ISBN 978-0-387-77488-6, 317-335. https://dx.doi.org/10.1007/978-0-387-77489-3_11

Steuernagel B, Taudien S, Gundlach H, Seidel M, Ariyadasa R, Schulte D, Petzold A, Felder M, Graner A, Scholz U, Mayer K F, Platzer M, Stein N:

De novo 454 sequencing of barcoded BAC pools for comprehensive gene survey and genome analysis in the complex genome of barley. BMC Genomics 10 (2009) 547. https://dx.doi.org/10.1186/1471-2164-10-547

Stracke S, Haseneyer G, Veyrieras J B, Geiger H H, Sauer S, Graner A, Piepho H P:

Association mapping reveals gene action and interactions in the determination of flowering time in barley. Theor. Appl. Genet. 118 (2009) 259-273. https://dx.doi.org/10.1007/s00122-008-0896-y

Thiel T, Graner A, Waugh R, Grosse I, Close T J, Stein N:

Evidence and evolutionary analysis of ancient whole-genome duplication in barley predating the divergence from rice. BMC Evol. Biol. 9 (2009) 209. https://dx.doi.org/10.1186/1471-2148-9-209

Toklu F, Karaköy T, Hakli E, Bicer T, Brandolini A, Kilian B, Özkan H:

Genetic variation among lentil (Lens culinaris Medik) landraces from Southeast Turkey. Plant Breed. 128 (2009) 178-186. https://dx.doi.org/10.1111/j.1439-0523.2008.01548.x

Turuspekov Y, Honda I, Watanabe Y, Stein N, Komatsuda T:

An inverted and micro-colinear genomic regions of rice and barley carrying the cly1 gene for cleistogamy. Breed. Sci. 59 (2009) 657-663. https://dx.doi.org/10.1270/jsbbs.59.657

Vaccino P, Becker H A, Brandolini A, Salamini F, Kilian B:

A catalogue of Triticum monococcum genes encoding toxic and immunogenic peptides for celiac disease patients. Mol. Genet. Genomics 281 (2009) 289-300. https://dx.doi.org/10.1007/s00438-008-0412-8

Varshney R K, Hoisington D A, Nayak S N, Graner A:

Molecular plant breeding: methodology and achievements. In: Gustafson J P, Langridge P, Somers D J (Eds.): Plant genomics: methods and protocols. (Series: Methods in molecular biology, Vol. 513) New York: Humana Press (2009) ISBN 978-1-588-29997-0, 283-304. https://dx.doi.org/10.1007/978-1-59745-427-8_15

Wicker T, Krattinger S G, Lagudah E S, Komatsuda T, Pourkheirandish M, Matsumoto T, Cloutier S, Reiser L, Kanamori H, Sato K, Perovic D, Stein N, Keller B:

Analysis of intraspecies diversity in wheat and barley genomes identifies breakpoints of ancient haplotypes and provides insight into the structure of diploid and hexaploid Triticeae gene pools. Plant Physiol. 149 (2009) 258-270. https://dx.doi.org/10.1104/pp.108.129734

Wicker T, Taudien S, Houben A, Keller B, Graner A, Platzer M, Stein N:

A whole-genome snapshot of 454 sequences exposes the composition of the barley genome and provides evidence for parallel evolution of genome size in wheat and barley. Plant J. 59 (2009) 712-722. https://dx.doi.org/10.1111/j.1365-313X.2009.03911.x

2008

Altintas S, Toklu F, Kafkas S, Kilian B, Brandolini A, Özkan H:

Estimating genetic diversity in durum and bread wheat cultivars from Turkey using AFLP and SAMPL markers. Plant Breed. 127 (2008) 9-14. https://dx.doi.org/10.1111/j.1439-0523.2007.01424.x

Castillo A, Budak H, Varshney R K, Dorado G, Graner A, Hernandez P:

Transferability and polymorphism of barley EST-SSR markers used for phylogenetic analysis in Hordeum chilense. BMC Plant Biol. 8 (2008) 97. https://dx.doi.org/10.1186/1471-2229-8-97

Chabane K, Varshney R K, Graner A, Valkoun J:

Generation and exploitation of EST-derived SSR markers for assaying molecular diversity in durum wheat populations. Genet. Resour. Crop Evol. 55 (2008) 869-881. https://dx.doi.org/10.1007/s10722-007-9292-8

Goncharov N P, Golovnina K A, Kilian B, Glushkov S, Blinov A, Shumny V K:

Evolutionary history of wheats - the main cereal of mankind. In: Dobretsov N, Kolchanov N, Rozanov A, Zavarzin G (Eds.): Biosphere origin and evolution. New York: Springer (2008) ISBN 978-0-387-68655-4, 407-419. https://dx.doi.org/10.1007/978-0-387-68656-1_29

Graner A:

Professor Manfred Fischer is 70 years old. Erwerbs-Obstbau 50 (2008) 99-100.

Graner A:

Genetische Diversität als Grundlage der Pflanzenzüchtung. In: Röbbelen G (Ed.): Die Entwicklung der Pflanzenzüchtung in Deutschland (1908-2008): 100 Jahre GFP e.V. – eine Dokumentation. (Series: Vorträge für Pflanzenzüchtung, Vol. 75) Göttingen: Ges. für Pflanzenzüchtung e.V. (2008) 501-509.

Guo P G, Baum M, Varshney R K, Graner A, Grando S, Ceccarelli S:

QTLs for chlorophyll and chlorophyll fluorescence parameters in barley under post-flowering drought. Euphytica 163 (2008) 203-214. https://dx.doi.org/10.1007/s10681-007-9629-6

Haseneyer G, Ravel C, Dardevet M, Balfourier F, Sourdille P, Charmet G, Brunel D, Sauer S, Geiger H H, Graner A, Stracke S:

High level of conservation between genes coding for the GAMYB transcription factor in barley (Hordeum vulgare L.) and bread wheat (Triticum aestivum L.) collections. Theor. Appl. Genet. 117 (2008) 321-331. https://dx.doi.org/10.1007/s00122-008-0777-4

Kota R, Varshney R K, Prasad M, Zhang H, Stein N, Graner A:

EST-derived single nucleotide polymorphism markers for assembling genetic and physical maps of the barley genome. Funct. Integr. Genomics 8 (2008) 223-233. https://dx.doi.org/10.1007/s10142-007-0060-9

Sreenivasulu N, Graner A, Wobus U:

Barley genomics: an overview. Int. J. Plant Genomics (2008) 13 pp. https://dx.doi.org/10.1155/2008/486258

Sreenivasulu N, Usadel B, Winter A, Radchuk V, Scholz U, Stein N, Weschke W, Strickert M, Close T J, Stitt M, Graner A, Wobus U:

Barley grain maturation and germination: metabolic pathway and regulatory network commonalities and differences highlighted by New MapMan/PageMan profiling tools. Plant Physiol. 146 (2008) 1738-1758. https://dx.doi.org/10.1104/pp.107.111781

Varshney R K, Salem K F M, Baum M, Röder M S, Graner A, Börner A:

SSR and SNP diversity in a barley germplasm collection. Plant Genet. Res. 6 (2008) 167-174. https://dx.doi.org/10.1017/S1479262108993187

Varshney R K, Thiel T, Sretenovic-Rajicic T, Baum M, Valkoun J, Guo P, Grando S, Ceccarelli S, Graner A:

Identification and validation of a core set of informative genic SSR and SNP markers for assaying functional diversity in barley. Mol. Breed. 22 (2008) 1-13. https://dx.doi.org/10.1007/s11032-007-9151-5

Waugh R, Rostoks N, Ramsay L, Marshall D, Thomas B, Druka A, Wannamaker S, Svensson J, Bhat P, Graner A, Stein N, Varshney R K, Kearsey M, Luo Z, Potokina E, Close T J:

Towards whole genome association genetic scans in barley. In: Molina-Cano J L, Christou P, Graner A, Hammer K, Jouve N, Keller B, Lasa J M, Powell W, Royo C, Shewry P, Stanca A M (Eds.): Cereal science and technology for feeding ten billion people: genomics era and beyond, Proceedings for the Meeting of the Eucarpia Cereal Section, Lleida (Spain), 13.-17.11.2006. (Series: Options Méditerranéennes, Series A, Séminaires Méditerranéens, Vol. 81) Zaragoza: CIHEAM / IRTA (2008) ISBN 2-85352-404-3, 99-102.

Wicker T, Narechania A, Sabot F, Stein J, Vu G T, Graner A, Ware D, Stein N:

Low-pass shotgun sequencing of the barley genome facilitates rapid identification of genes, conserved non-coding sequences and novel repeats. BMC Genomics 9 (2008) 518. https://dx.doi.org/10.1186/1471-2164-9-518

Wobus U, Stachow U, Werner A, Graner A, Scheel D:

Bitte keine Pauschalurteile: Grüne Gentechnik wird selten angemessen bewertet. In: Zens J, Henneberg C, Werner A (Eds.): Zwischenruf 2. Bonn: Leibniz-Gemeinschaft e.V. (2008) 13-17.

2007

Altmann T, Strompen G, Gottwald S, Stein N, Hohmann U, Jung C, Holtgräwe D, Weisshaar B, Lunn J, Stitt M:

GABI-TILL: Zentrale Plattform zur funktionalen Untersuchung von Leitgenen in Feldfrüchten mit Hilfe der TILLING-Technologie. GenomXPress Sonderausgabe März (2007) 15.

Giang V T H:

Towards map based cloning of the Gibberellin-insensitive dwarfing gene sdw3 of barley. (PhD Thesis) Greifswald, Mathematisch-Naturwissenschaftliche Fakultät, Ernst-Moritz-Arndt-Universität (2007) 88 pp.

Kilian B, Özkan H, Deusch O, Effgen S, Brandolini A, Kohl J, Martin W, Salamini F:

Independent wheat B and G genome origins in outcrossing Aegilops progenitor haplotypes. Mol. Biol. Evol. 24 (2007) 217-227. https://dx.doi.org/10.1093/molbev/msl151

Kilian B, Özkan H, Walther A, Kohl J, Dagan T, Salamini F, Martin W:

Molecular diversity at 18 loci in 321 wild and 92 domesticate lines reveal no reduction of nucleotide diversity during Triticum monococcum (Einkorn) domestication: implications for the origin of agriculture. Mol. Biol. Evol. 24 (2007) 2657-2668. https://dx.doi.org/10.1093/molbev/msm192

Komatsuda T, Pourkheirandish M, He C F, Azhaguvel P, Kanamori H, Perovic D, Stein N, Graner A, Wicker T, Tagiri A, Lundqvist U, Fujimura T, Matsuoka M, Matsumoto T, Yano M:

Six-rowed barley originated from a mutation in a homeodomain-leucine zipper I-class homeobox gene. Proc. Natl. Acad. Sci. U.S.A. 104 (2007) 1424-1429. https://dx.doi.org/10.1073/pnas.0608580104

Kuenne C, Grosse I, Matthies I, Scholz U, Sretenovic-Rajicic T, Stein N, Stephanik A, Steuernagel B, Weise S:

Using data warehouse technology in crop plant bioinformatics. J. Integr. Bioinform. 4 (2007) 88. https://dx.doi.org/10.2390/biecoll-jib-2007-88

Marcel T C, Varshney R K, Barbieri M, Jafary H, de Kock M J D, Graner A, Niks R E:

A high-density consensus map of barley to compare the distribution of QTLs for partial resistance to Puccinia hordei and of defence gene homologues. Theor. Appl. Genet. 114 (2007) 487-500. https://dx.doi.org/10.1007/s00122-006-0448-2

Neumann K, Varshney R K, Börner A:

Assoziationskartierung – ein neuer Ansatz zur Lokalisation von QTLs für die Trockentoleranz in Gerste (Hordeum vulgare L.). Vortr. Pflanzenzücht. 72 (2007) 119-124.

Özkan H, Brandolini A, Torun A, Altintas S, Eker S, Kilian B, Braun H, Salamini F, Cakmak I:

Natural variation and identification of microelements content in seeds of einkorn wheat (Triticum monococcum). In: Buck H T, Nisi J E, Salomón N (Eds.): Wheat production in stressed environments. Dordrecht: Springer (2007) ISBN: 978-1-4020-5496-9, 455-462.

Perovic D, Tiffin P, Douchkov D, Bäumlein H, Graner A:

An integrated approach for the comparative analysis of a multigene family: The nicotianamine synthase genes of barley. Funct. Integr. Genomics 7 (2007) 169-179. https://dx.doi.org/10.1007/s10142-006-0040-5

Pourkheirandish M, Wicker T, Stein N, Fujimura T, Komatsuda T:

Analysis of the barley chromosome 2 region containing the six-rowed spike gene vrs1 reveals a breakdown of rice-barley micro collinearity by a transposition. Theor. Appl. Genet. 114 (2007) 1357-1365. https://dx.doi.org/10.1007/s00122-007-0522-4

Stein N:

Triticeae genomics: advances in sequence analysis of large genome cereal crops. Chromosome Res. 15 (2007) 21-31. https://dx.doi.org/10.1007/s10577-006-1107-9

Stein N:

Cereal genome colinearity revisited - advances through cereal genomics. Vortr. Pflanzenzüch. 71 (2007) 282-288.

Stein N:

Der Countdown läuft - Wissenschaftler am IPK übernehmen führende Rolle in der Gersten-Genomforschung. GenomXPress 4 (2007) 4-6.

Stein N, Prasad M, Scholz U, Thiel T, Zhang H, Wolf M, Kota R, Varshney R K, Perovic D, Grosse I, Graner A:

A 1,000-loci transcript map of the barley genome: new anchoring points for integrative grass genomics. Theor. Appl. Genet. 114 (2007) 823-839. https://dx.doi.org/10.1007/s00122-006-0480-2

Stracke S, Haseneyer G, Graner A, Sauer S, Geiger H H, Piepho H-P, Paul C, Charcosset A, Camus-Kulandaivelu L, Veyrieras J-B, Rousset M, Manicacci D, Bonnin I, Cornoullier J, Brunel D, Dupuits C, Charmet G, Ravel C, Courtois B, Deu M, Dubreuil P, Murigneux A:

GABI-RYE-BARLEY-DIVERSITY: Von der Genomik zur genetischen Diversität: Zusammenhang zwischen genetischer Vielfalt und Merkmalsvariationen bei Getreide. GenomXPress Sonderausgabe März (2007) 20.

Stracke S, Presterl T, Stein N, Perovic D, Ordon F, Graner A:

Effects of introgression and recombination on haplotype structure and linkage disequilibrium surrounding a locus encoding Bymovirus resistance in barley. Genetics 175 (2007) 805-817. https://dx.doi.org/10.1534/genetics.106.063800

Varshney R K, Beier U, Khlestkina E K, Kota R, Korzun V, Graner A, Börner A:

Single nucleotide polymorphisms in rye (Secale cereale L.): discovery, frequency, and applications for genome mapping and diversity studies. Theor. Appl. Genet. 114 (2007) 1105-1116. https://dx.doi.org/10.1007/s00122-007-0504-6

Varshney R K, Chabane K, Hendre P S, Aggarwal R K, Graner A:

Comparative assessment of EST-SSR, EST-SNP and AFLP markers for evaluation of genetic diversity and conservation of genetic resources using wild, cultivated and elite barleys. Plant Sci. 173 (2007) 638-649. https://dx.doi.org/10.1016/j.plantsci.2007.08.010

Varshney R K, Langridge P, Graner A:

Application of genomics to molecular breeding of wheat and barley. Adv. Genet. 58 (2007) 121-155. https://dx.doi.org/10.1016/S0065-2660(06)58005-8

Varshney R K, Marcel T C, Ramsay L, Russell J, Röder M S, Stein N, Waugh R, Langridge P, Niks R E, Graner A:

A high density barley microsatellite consensus map with 775 SSR loci. Theor. Appl. Genet. 114 (2007) 1091-1103. https://dx.doi.org/10.1007/s00122-007-0503-7

Weidner A, Varshney R K, Buck-Sorlin G H, Stein N, Graner A, Börner A:

Salztoleranz bei Gerste – Assoziationskartierung kontra klassische QTL-Kartierung. Vortr. Pflanzenzücht. 72 (2007) 125-130.

2006

Andreeva K:

Erschließung genetischer Ressourcen der Wiesenrispe für die Gräserzüchtung durch Analyse wichtiger Merkmalsausprägungen. (PhD Thesis) Halle/S., Martin-Luther-Universität Halle-Wittenberg (2006) 118 pp.

Brandolini A, Vaccino P, Boggini G, Ozkan H, Kilian B, Salamini F:

Quantification of genetic relationships among A genomes of wheats. Genome 49 (2006) 297-305. https://dx.doi.org/10.1139/g05-110

Druka A, Muehlbauer G, Druka I, Caldo R, Baumann U, Rostoks N, Schreiber A, Wise R, Close T, Kleinhofs A, Graner A, Schulman A, Langridge P, Sato K, Hayes P, McNicol J, Marshall D, Waugh R:

An atlas of gene expression from seed to seed through barley development. Funct. Integr. Genomics 6 (2006) 202-211. https://dx.doi.org/10.1007/s10142-006-0025-4

Galiba G, Kocsy G, Vágúkfaövo A, Stein N, Schweizer P, Dubcovsky J, Cattivelli L:

Gene identification by transcript profiling and real time PCR during cold acclimation using wheat 5A chromosome substitution and recombinant lines. In: Börner A, Pánková K, Snape J W (Eds.): Proceedings of the 13th International EWAC Conference, 27 June - 1 July 2005 Prague, Czech Republic. (Series: European Wheat Aneuploid Co-Operative newsletter, Vol. 13) Gatersleben: Institut für Pflanzengenetik und Kulturpflanzenforschung (2006) 33-37.

Graner A:

Barley research at IPK. In: de Vincente M C, Glaszmann J C (Eds.): Molecular markers for allele mining, proceedings. Rome: IPGRI (2006) ISBN 978-92-9043-705-5, 29-30.

Graner A, Andersson M S, de Vincente M C:

A model for DNA banking to enhance the management, distribution and use of ex situ stored PGR. In: de Vincente M C, Andersson M S (Eds.): DNA banks – providing novel options for genebanks? Rome: IPGRI (2006) ISBN 978-92-9043-702-4, 69-75.

Graner A, Börner A:

Quest for seed immortality is mission impossible. Nature 442 (2006) 353-353. https://dx.doi.org/10.1038/442353c

Graner A, Dehmer K J:

Genetische Diversität in Genbanken und deren züchterische Verfügbarkeit. In: Christen O, Isermeyer F, Flessa H, Hoffmann V, Kalm E, Otte A (Eds.): Züchtungsforschung zwischen Wettbewebsfähigkeit, Ressourcenschutz und Verbrauchererwartungen. (Series: Agrarspektrum, Vol. 39) Frankfurt/M [u.a.]: DLG-Verl. (2006) ISBN 3-7690-5037-1, 61-71.

Khlestkina E K, Huang X, Varshney R K, Chebotar S, Röder M S, Graner A, Börner A:

Comparative studies of genetic diversity in wheat and barley germplasm collected at different time periods. In: Börner A, Pánková K, Snape J W (Eds.): Proceedings of the 13th International EWAC Conference, 27 June - 1 July 2005 Prague, Czech Republic. (Series: European Wheat Aneuploid Co-Operative newsletter, Vol. 13) Gatersleben: Institut für Pflanzengenetik und Kulturpflanzenforschung (2006) 94-97.

Khlestkina E K, Varshney R K, Röder M S, Graner A, Börner A:

A comparative assessment of genetic diversity in cultivated barley collected in different decades of the last century in Austria, Albania and India by using genomic and genic simple sequence repeat (SSR) markers. Plant Genet. Resour. 4 (2006) 125-133. https://dx.doi.org/10.1079/PGR2006109

Kilian B, Özkan H, Kohl J, von Haeseler A, Barale F, Deusch O, Brandolini A, Yucel C, Martin W, Salamini F:

Haplotype structure at seven barley genes: relevance to gene pool bottlenecks, phylogeny of ear type and site of barley domestication. Mol. Genet. Genomics 276 (2006) 230-241. https://dx.doi.org/10.1007/s00438-006-0136-6

Maraschin S D F, Caspers M, Potokina E, Wulfert F, Graner A, Spaink H P, Wang M:

CDNA array analysis of stress-induced gene expression in barley androgenesis. Physiol. Plant. 127 (2006) 535-550. https://dx.doi.org/10.1111/j.1399-3054.2006.00673.x

Navakode S, Varshney R K, Graner A, Börner A:

Screening OWB population for aluminium tolerance. In: Börner A, Pánková K, Snape J W (Eds.): Proceedings of the 13th International EWAC Conference, 27 June - 1 July 2005 Prague, Czech Republic. (Series: European Wheat Aneuploid Co-Operative newsletter, Vol. 13) Gatersleben: Institut für Pflanzengenetik und Kulturpflanzenforschung (2006) 104-106.

Potokina E, Prasad M, Malysheva L, Röder M S, Graner A:

Expression genetics and haplotype analysis reveal cis regulation of serine carboxypeptidase I (Cxp1), a candidate gene for malting quality in barley (Hordeum vulgare L.). Funct. Integr. Genomics 6 (2006) 25-35. https://dx.doi.org/10.1007/s10142-005-0008-x

Röder M S, Potokina E, Malysheva-Otto L, Matthies I, Graner A:

Der steinige molekulare Weg zu besserem Malz. Vortr. Pflanzenzücht. 69 (2006) 83-85.

Rossini L, Vecchietti A, Nicoloso L, Stein N, Franzago S, Salamini F, Pozzi C:

Candidate genes for barley mutants involved in plant architecture: an in silico approach. Theor. Appl. Genet. 112 (2006) 1073-1085. https://dx.doi.org/10.1007/s00122-006-0209-2

Rostoks N, Ramsay L, MacKenzie K, Cardle L, Bhat P R, Roose M L, Svensson J T, Stein N, Varshney R K, Marshall D F, Graner A, Close T J, Waugh R:

Recent history of artificial outcrossing facilitates whole-genome association mapping in elite inbred crop varieties. Proc. Natl. Acad. Sci. U.S.A. 103 (2006) 18656-18661. https://dx.doi.org/10.1073/pnas.0606133103

Sretenovic-Rajicic T, Ninkovic S, Miljus-Dukic J, Vinterhalter B, Vinterhalter D:

Agrobacterium rhizogenes-mediated transformation of Brassica oleracea var. sabauda and B. oleracea var. capitata. Biol. Plant. 50 (2006) 525-530. https://dx.doi.org/10.1007/s10535-006-0083-4

Varshney R K, Grosse I, Hähnel U, Siefken R, Prasad M, Stein N, Langridge P, Altschmied L, Graner A:

Genetic mapping and BAC assignment of EST-derived SSR markers shows non-uniform distribution of genes in the barley genome. Theor. Appl. Genet. 113 (2006) 239-250. https://dx.doi.org/10.1007/s00122-006-0289-z

Weidner A, Varshney R K, Buck-Sorlin G H, Stein N, Graner A, Börner A:

QTLs for salt tolerance in three different barley mapping populations. In: Börner A, Pánková K, Snape J W (Eds.): Proceedings of the 13th International EWAC Conference, 27 June - 1 July 2005 Prague, Czech Republic. (Series: European Wheat Aneuploid Co-Operative newsletter, Vol. 13) Gatersleben: Institut für Pflanzengenetik und Kulturpflanzenforschung (2006) 51-55.

Wicker T, Schlagenhauf E, Graner A, Close T J, Keller B, Stein N:

454 sequencing put to the test using the complex genome of barley. BMC Genomics 7 (2006) 275. https://dx.doi.org/10.1186/1471-2164-7-275

Willsmore K L, Eckermann P, Varshney R K, Graner A, Langridge P, Pallotta M, Cheong J, Williams K J:

New eSSR and gSSR markers added to Australian barley maps. Aust. J. Agric. Res. 57 (2006) 953-959. https://dx.doi.org/10.1071/Ar05384

Zhao T, Palotta M, Langridge P, Prasad M, Graner A, Schulze-Lefert P, Koprek T:

Mapped Ds/T-DNA launch pads for functional genomics in barley. Plant J. 47 (2006) 811-826. https://dx.doi.org/10.1111/j.1365-313X.2006.02831.x